Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0000627

Physical Location & Seq

Genomic Coordinates Forward (+)

46092790 .. 46095244

Gene Structure 2455 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG224400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGGCTCAGGTAGATGATTACCTTAGGAAACAAGCTGCTGAATTGTTGCAAGCTTTGAATGAGGGATGCTATAAAGAGGACAATATCCCCTGCCAGATTGAAGAGAGTCTCTTCTTGGGTTCTTTTGGAGCTGCAAATAACGAGGAAGAACTGAACAGGTTGAACATTACTCACATTTTGACCGTGGGTAGTGCAATGCCTCCTGCATATCCAAATGATTTTGTCCATATAGTTTTAAAAGTTTCTGACGGACCAAGTACAAACATAAAACAGCACTTTGATGAGTGTTTCGATTACATTGAGGAAGCTAAAAGATCTGGTGGCAGTGTGCTGGTTCATTGCTTTGTGGGAAGATCCAGAAGTGTGGTTGTTGTTGTTCCTTATCTTCTGAAAAAGCACGGTATGACCCTCTTCAAAGCTCTTGATCACGTGAAGAGTGGACGAGCACGGGCAGCTCCTAATGCTGGTTTCAGTACACAGCTGTATGAATATGAAATGTTTCTTTCTGGGACTTCCATATACTTTACTATGAAGCCTGCAGAATTCTTGCAACTTCGCAAAGATGTGAAGTTAGTGTTGGTGCAAGTTGTTTGCCGGGAAAGCAGTGATGAGCTTAAACCAAGCCTGGAAGCAGCCAAATCAATCTGCAGGAGTTGGAGGACAATTGGTGGCCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0005488 GO:0005515 GO:0005516 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008138 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0036211 GO:0042578 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04360 ko04810 map04360 map04810

Pfam Domains

Protein Families

DSPc

Protein Analysis

225

Amino Acids

25.12

Weight (kDa)

6.31

Isoelectric Point (pI)

52.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DSPc	PF00782	37 - 165	1.1e-27	Dual specificity phosphatase, catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000627)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06110 AT3G06110 AT3G06110 AT3G23610 AT3G23610 AT3G23610 AT3G23610 AT3G23610 AT3G23610
fragaria_vesca	FvH4_4g14540 FvH4_4g14540 FvH4_4g14540 FvH4_4g14540 FvH4_4g14540 FvH4_4g14540 FvH4_4g14580 FvH4_4g14580 FvH4_4g14700
malus_domestica	MD16G1184700.v1.1
prunus_persica	Prupe.1G151900_v2.0.a1 Prupe.1G151900_v2.0.a1 Prupe.1G151900_v2.0.a1 Prupe.1G151900_v2.0.a1 Prupe.1G151900_v2.0.a1 Prupe.1G151900_v2.0.a1
pyrus_communis	pycom13g15890 pycom16g15510
rosa_chinensis	RchiOBHm_Chr4g0396121 RchiOBHm_Chr4g0418191 RchiOBHm_Chr4g0418241 RchiOBHm_Chr4g0418281 RchiOBHm_Chr7g0218781
rosa_laevigata	RLG00000007880 RLG00000007884 RLG00000009570
rosa_multiflora	Rmu_co8157318.1_g000001 Rmu_sc0000032.1_g000004 Rmu_sc0000032.1_g000006 Rmu_sc0000408.1_g000002 Rmu_sc0006325.1_g000026 Rmu_sc0009634.1_g000005
rosa_roxburghii	Rroxscaffold_5G00340920 Rroxscaffold_5G00361410 Rroxscaffold_5G00361430 Rroxscaffold_5G00361460
rosa_rugosa	Rorug01G0235100 Rorug03G0352200.1 Rorug04G0150700 Rorug04G0151000 Rorug04G0151300 Rorug04G0151700 Rorug04G0151800 Rorug07G0049500
rosa_samantha	Rh2BG097600 Rh2CG099500 Rh2DG096900 Rh4AG213100 Rh4AG213300 Rh4BG064600 Rh4BG217300 Rh4BG217600 Rh4BG217700 Rh4CG071200 Rh4CG224400 Rh4CG224700 Rh4CG225000 Rh4DG061500 Rh4DG211300 Rh4DG211500 Rh4DG211900 Rh5AG356200 Rh6DG255000 Rh7AG321200 Rh7CG337700 Rh7DG282300
rosa_wichuraiana	Rw4G018090 Rw4G018120 Rw6G006740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	348
AcsI	RAATTY	1 cut(s)	542
AcvI	CACGTG	1 cut(s)	430
AfaI	GTAC	2 cut(s)	259, 475
AfiI	CCNNNNNNNGG	1 cut(s)	464
AgsI	TTSAA	4 cut(s)	58, 101, 163, 415
AjnI	CCWGG	1 cut(s)	624
AjuI	GAANNNNNNNTTGG	2 cut(s)	560, 592
AluBI	AGCT	8 cut(s)	35, 53, 131, 308, 419, 455, 481, 613
AluI	AGCT	8 cut(s)	35, 53, 131, 308, 419, 455, 481, 613
Alw21I	GWGCWC	1 cut(s)	448
Alw26I	GTCTC	1 cut(s)	113
AlwI	GGATC	1 cut(s)	348
AoxI	GGCC	1 cut(s)	670
ApeKI	GCWGC	4 cut(s)	35, 131, 452, 632
ApoI	RAATTY	1 cut(s)	542
Asp700I	GAANNNNTTC	1 cut(s)	498
AspS9I	GGNCC	1 cut(s)	251
AsuC2I	CCSGG	1 cut(s)	596
AvaII	GGWCC	1 cut(s)	251
AxyI	CCTNAGG	1 cut(s)	23
BbrPI	CACGTG	1 cut(s)	430
Bbv12I	GWGCWC	1 cut(s)	448
BbvI	GCAGC	4 cut(s)	22, 118, 464, 644
BciT130I	CCWGG	1 cut(s)	626
BclI	TGATCA	1 cut(s)	424
BcnI	CCSGG	1 cut(s)	596
BcoDI	GTCTC	1 cut(s)	113
BfmI	CTRYAG	2 cut(s)	537, 646
BglII	AGATCT	1 cut(s)	314
BisI	GCNGC	4 cut(s)	36, 132, 453, 633
BlsI	GCNGC	4 cut(s)	37, 133, 454, 634
Bme1390I	CCNGG	2 cut(s)	596, 626
Bme18I	GGWCC	1 cut(s)	251
BmgT120I	GGNCC	1 cut(s)	251
BmrFI	CCNGG	2 cut(s)	596, 626
BmsI	GCATC	1 cut(s)	56
Bpu10I	CCTNAGC	1 cut(s)	6
BpuMI	CCSGG	1 cut(s)	596
BsaAI	YACGTR	1 cut(s)	430
BsaJI	CCNNGG	1 cut(s)	183
Bsc4I	CCNNNNNNNGG	1 cut(s)	464
Bse21I	CCTNAGG	1 cut(s)	23
Bse3DI	GCAATG	2 cut(s)	201, 337
BseBI	CCWGG	1 cut(s)	626
BseDI	CCNNGG	1 cut(s)	183
BseGI	GGATG	1 cut(s)	71
BseLI	CCNNNNNNNGG	1 cut(s)	464
BseMI	GCAATG	2 cut(s)	201, 337
BseMII	CTCAG	1 cut(s)	20
BseXI	GCAGC	4 cut(s)	22, 118, 464, 644
BshFI	GGCC	1 cut(s)	672
BsiHKAI	GWGCWC	1 cut(s)	448
BsiSI	CCGG	1 cut(s)	595
BslFI	GGGAC	1 cut(s)	523
BslI	CCNNNNNNNGG	1 cut(s)	464
BsmAI	GTCTC	1 cut(s)	113
BsmFI	GGGAC	1 cut(s)	523
BsnI	GGCC	1 cut(s)	672
Bsp1286I	GDGCHC	1 cut(s)	448
Bsp143I	GATC	3 cut(s)	314, 353, 424
BspANI	GGCC	1 cut(s)	672
BspCNI	CTCAG	1 cut(s)	19
BspMAI	CTGCAG	2 cut(s)	541, 650
BspPI	GGATC	1 cut(s)	348
BsrDI	GCAATG	2 cut(s)	201, 337
BssECI	CCNNGG	1 cut(s)	183
BssMI	GATC	3 cut(s)	314, 353, 424
Bst2UI	CCWGG	1 cut(s)	626
Bst4CI	ACNGT	2 cut(s)	184, 401
Bst6I	CTCTTC	4 cut(s)	96, 116, 416, 428
BstBAI	YACGTR	1 cut(s)	430
BstC8I	GCNNGC	2 cut(s)	51, 537
BstDEI	CTNAG	2 cut(s)	6, 23
BstDSI	CCRYGG	1 cut(s)	183
BstF5I	GGATG	1 cut(s)	71
BstKTI	GATC	3 cut(s)	317, 356, 427
BstMAI	GTCTC	1 cut(s)	113
BstMBI	GATC	3 cut(s)	314, 353, 424
BstMWI	GCNNNNNNNGC	3 cut(s)	452, 461, 600
BstNI	CCWGG	1 cut(s)	626
BstSCI	CCNGG	2 cut(s)	594, 624
BstSFI	CTRYAG	2 cut(s)	537, 646
BstV1I	GCAGC	4 cut(s)	22, 118, 464, 644
BstX2I	RGATCY	2 cut(s)	314, 353
BstXI	CCANNNNNNTGG	1 cut(s)	364
BstYI	RGATCY	2 cut(s)	314, 353
Bsu36I	CCTNAGG	1 cut(s)	23
BsuRI	GGCC	1 cut(s)	672
BtgI	CCRYGG	1 cut(s)	183
BtsCI	GGATG	1 cut(s)	71
BtsI	GCAGTG	2 cut(s)	331, 610
BtsIMutI	CAGTG	2 cut(s)	331, 610
Cac8I	GCNNGC	2 cut(s)	51, 537
Cfr13I	GGNCC	1 cut(s)	251
Csp6I	GTAC	2 cut(s)	258, 474
CviQI	GTAC	2 cut(s)	258, 474
DdeI	CTNAG	2 cut(s)	6, 23
DpnI	GATC	3 cut(s)	316, 355, 426
DpnII	GATC	3 cut(s)	314, 353, 424
DraI	TTTAAA	1 cut(s)	237
Eam1104I	CTCTTC	4 cut(s)	96, 116, 416, 428
EarI	CTCTTC	4 cut(s)	96, 116, 416, 428
Eco47I	GGWCC	1 cut(s)	251
Eco72I	CACGTG	1 cut(s)	430
Eco81I	CCTNAGG	1 cut(s)	23
EcoRI	GAATTC	1 cut(s)	542
EcoRII	CCWGG	1 cut(s)	624
FaqI	GGGAC	1 cut(s)	523
FbaI	TGATCA	1 cut(s)	424
Fnu4HI	GCNGC	4 cut(s)	36, 132, 453, 633
FokI	GGATG	1 cut(s)	78
Fsp4HI	GCNGC	4 cut(s)	36, 132, 453, 633
GluI	GCNGC	4 cut(s)	36, 132, 453, 633
HaeIII	GGCC	1 cut(s)	672
HapII	CCGG	1 cut(s)	595
HindIII	AAGCTT	1 cut(s)	51
HinfI	GANTC	1 cut(s)	106
HpaII	CCGG	1 cut(s)	595
Hpy166II	GTNNAC	2 cut(s)	440, 476
Hpy188I	TCNGA	2 cut(s)	247, 390
Hpy188III	TCNNGA	2 cut(s)	357, 422
Hpy8I	GTNNAC	2 cut(s)	440, 476
HpyCH4III	ACNGT	2 cut(s)	184, 401
HpyCH4IV	ACGT	1 cut(s)	429
HpyCH4V	TGCA	8 cut(s)	49, 134, 194, 206, 539, 550, 583, 648
HpyF10VI	GCNNNNNNNGC	3 cut(s)	452, 461, 600
HpyF3I	CTNAG	2 cut(s)	6, 23
HpySE526I	ACGT	1 cut(s)	429
Ksp22I	TGATCA	1 cut(s)	424
Kzo9I	GATC	3 cut(s)	314, 353, 424
LmnI	GCTCC	2 cut(s)	128, 460
Lsp1109I	GCAGC	4 cut(s)	22, 118, 464, 644
LweI	GCATC	1 cut(s)	56
MaeII	ACGT	1 cut(s)	429
MalI	GATC	3 cut(s)	316, 355, 426
MboI	GATC	3 cut(s)	314, 353, 424
MboII	GAAGA	7 cut(s)	103, 113, 158, 363, 377, 403, 445
MfeI	CAATTG	1 cut(s)	663
MflI	RGATCY	2 cut(s)	314, 353
MhlI	GDGCHC	1 cut(s)	448
MluCI	AATT	3 cut(s)	41, 542, 663
MlyI	GAGTC	1 cut(s)	115
MmeI	TCCRAC	1 cut(s)	635
MnlI	CCTC	7 cut(s)	55, 70, 136, 210, 295, 419, 651
MroXI	GAANNNNTTC	1 cut(s)	498
MseI	TTAA	2 cut(s)	236, 615
MslI	CAYNNNNRTG	1 cut(s)	279
MspA1I	CMGCKG	1 cut(s)	481
MspI	CCGG	1 cut(s)	595
MspR9I	CCNGG	2 cut(s)	596, 626
MunI	CAATTG	1 cut(s)	663
MvaI	CCWGG	1 cut(s)	626
MwoI	GCNNNNNNNGC	3 cut(s)	452, 461, 600
NciI	CCSGG	1 cut(s)	596
NdeII	GATC	3 cut(s)	314, 353, 424
PdmI	GAANNNNTTC	1 cut(s)	498
PkrI	GCNGC	4 cut(s)	37, 133, 454, 634
PleI	GAGTC	1 cut(s)	114
PmaCI	CACGTG	1 cut(s)	430
PmlI	CACGTG	1 cut(s)	430
PpsI	GAGTC	1 cut(s)	114
Ppu21I	YACGTR	1 cut(s)	430
Psp6I	CCWGG	1 cut(s)	624
PspCI	CACGTG	1 cut(s)	430
PspGI	CCWGG	1 cut(s)	624
PspPI	GGNCC	1 cut(s)	251
PstI	CTGCAG	2 cut(s)	541, 650
PsuI	RGATCY	2 cut(s)	314, 353
PvuII	CAGCTG	1 cut(s)	481
RsaI	GTAC	2 cut(s)	259, 475
RsaNI	GTAC	2 cut(s)	258, 474
RseI	CAYNNNNRTG	1 cut(s)	279
SaqAI	TTAA	2 cut(s)	236, 615
SatI	GCNGC	4 cut(s)	36, 132, 453, 633
Sau3AI	GATC	3 cut(s)	314, 353, 424
Sau96I	GGNCC	1 cut(s)	251
SchI	GAGTC	1 cut(s)	115
ScrFI	CCNGG	2 cut(s)	596, 626
SduI	GDGCHC	1 cut(s)	448
SfaNI	GCATC	1 cut(s)	56
SfcI	CTRYAG	2 cut(s)	537, 646
SinI	GGWCC	1 cut(s)	251
SmiMI	CAYNNNNRTG	1 cut(s)	279
Sse9I	AATT	3 cut(s)	41, 542, 663
StyD4I	CCNGG	2 cut(s)	594, 624
TaaI	ACNGT	2 cut(s)	184, 401
TaiI	ACGT	1 cut(s)	432
TaqI	TCGA	1 cut(s)	291
TasI	AATT	3 cut(s)	41, 542, 663
TatI	WGTACW	2 cut(s)	257, 473
Tru1I	TTAA	2 cut(s)	236, 615
Tru9I	TTAA	2 cut(s)	236, 615
TscAI	CASTG	2 cut(s)	331, 610
TseI	GCWGC	4 cut(s)	35, 131, 452, 632
TspDTI	ATGAA	4 cut(s)	326, 501, 507, 545
TspGWI	ACGGA	1 cut(s)	264
TspRI	CASTG	2 cut(s)	331, 610
VpaK11BI	GGWCC	1 cut(s)	251
XapI	RAATTY	1 cut(s)	542
XmnI	GAANNNNTTC	1 cut(s)	498

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.