Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0000627

Physical Location & Seq

Genomic Coordinates Reverse (-)

11675022 .. 11677988

Gene Structure 2967 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g15890.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGGATCCGATAGACGAATCCTTCAAGAAACAAATTGCAACATTGTTGAGAGTTATACATGTGACAAGATGCTCTAAAGAGGACAATGTTCCATGCCAAATTGAAGAGGGTCTCTTCTTGGGTTCTATTGGAGCTGCAAATAACAAGGACGAACTGAAAAACTTAAACATCACACACATTTTGACTGTGGCTAATTCTTTGGCACCTGCATATCCAAATGATTTTGTGTATAAGGTTATAAATGTTGCGGACAGAGTCTGCACAGATCTAAAACAGCACTTTGATGAGTGCATCGATTATATTGACGAAGCTACAAGATCTGGTGGTGGTGTGTTGGTTCATTGCTTTGTGGGAAGATCCAGAAGTGTGACTATTATTGTTGCATATCTGATGAAAAAGCATGGTATGAGCATATCTCAAGCTCTTGAACATGTGAAGAGCAGACGACCTCAGGCATCTCCTAATGCTGGTTTCATTTCACAACTGGAGAGCTTTGAAAGGTCTCTTTGTGGTGAGTCATTATTTTATTACTCATTTAATCCAACTAAGGTTCATGAATTACCGATGAAGAGAACAAGACAACGTAATGTACATGGTTGGCCTCCTGCGTTGAAGAACCTCGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0005488 GO:0005515 GO:0005516 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008138 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0036211 GO:0042578 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04360 ko04810 map04360 map04810

Pfam Domains

Protein Families

DSPc

Protein Analysis

209

Amino Acids

23.36

Weight (kDa)

8.51

Isoelectric Point (pI)

55.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000627)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06110 AT3G06110 AT3G06110 AT3G23610 AT3G23610 AT3G23610 AT3G23610 AT3G23610 AT3G23610
fragaria_vesca	FvH4_4g14540 FvH4_4g14540 FvH4_4g14540 FvH4_4g14540 FvH4_4g14540 FvH4_4g14540 FvH4_4g14580 FvH4_4g14580 FvH4_4g14700
malus_domestica	MD16G1184700.v1.1
prunus_persica	Prupe.1G151900_v2.0.a1 Prupe.1G151900_v2.0.a1 Prupe.1G151900_v2.0.a1 Prupe.1G151900_v2.0.a1 Prupe.1G151900_v2.0.a1 Prupe.1G151900_v2.0.a1
pyrus_communis	pycom13g15890 pycom16g15510
rosa_chinensis	RchiOBHm_Chr4g0396121 RchiOBHm_Chr4g0418191 RchiOBHm_Chr4g0418241 RchiOBHm_Chr4g0418281 RchiOBHm_Chr7g0218781
rosa_laevigata	RLG00000007880 RLG00000007884 RLG00000009570
rosa_multiflora	Rmu_co8157318.1_g000001 Rmu_sc0000032.1_g000004 Rmu_sc0000032.1_g000006 Rmu_sc0000408.1_g000002 Rmu_sc0006325.1_g000026 Rmu_sc0009634.1_g000005
rosa_roxburghii	Rroxscaffold_5G00340920 Rroxscaffold_5G00361410 Rroxscaffold_5G00361430 Rroxscaffold_5G00361460
rosa_rugosa	Rorug01G0235100 Rorug03G0352200.1 Rorug04G0150700 Rorug04G0151000 Rorug04G0151300 Rorug04G0151700 Rorug04G0151800 Rorug07G0049500
rosa_samantha	Rh2BG097600 Rh2CG099500 Rh2DG096900 Rh4AG213100 Rh4AG213300 Rh4BG064600 Rh4BG217300 Rh4BG217600 Rh4BG217700 Rh4CG071200 Rh4CG224400 Rh4CG224700 Rh4CG225000 Rh4DG061500 Rh4DG211300 Rh4DG211500 Rh4DG211900 Rh5AG356200 Rh6DG255000 Rh7AG321200 Rh7CG337700 Rh7DG282300
rosa_wichuraiana	Rw4G018090 Rw4G018120 Rw6G006740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	239
AarI	CACCTGC	1 cut(s)	214
Acc36I	ACCTGC	1 cut(s)	214
AccB1I	GGYRCC	1 cut(s)	202
AciI	CCGC	1 cut(s)	248
AclWI	GGATC	2 cut(s)	12, 351
AfaI	GTAC	1 cut(s)	591
AfiI	CCNNNNNNNGG	1 cut(s)	467
AflIII	ACRYGT	2 cut(s)	58, 430
AgsI	TTSAA	5 cut(s)	25, 104, 428, 497, 613
AluBI	AGCT	4 cut(s)	134, 311, 422, 492
AluI	AGCT	4 cut(s)	134, 311, 422, 492
Alw26I	GTCTC	2 cut(s)	116, 507
AlwI	GGATC	2 cut(s)	12, 351
AlwNI	CAGNNNCTG	1 cut(s)	258
AoxI	GGCC	1 cut(s)	599
ApeKI	GCWGC	1 cut(s)	134
AsuHPI	GGTGA	1 cut(s)	524
AxyI	CCTNAGG	1 cut(s)	450
BamHI	GGATCC	1 cut(s)	4
BanI	GGYRCC	1 cut(s)	202
BbvI	GCAGC	1 cut(s)	121
BcoDI	GTCTC	2 cut(s)	116, 507
BfuAI	ACCTGC	1 cut(s)	214
BglII	AGATCT	2 cut(s)	265, 317
BisI	GCNGC	1 cut(s)	135
BlsI	GCNGC	1 cut(s)	136
BmiI	GGNNCC	2 cut(s)	6, 204
BmsI	GCATC	3 cut(s)	59, 300, 464
BplI	GAGNNNNNCTC	2 cut(s)	400, 432
BpmI	CTGGAG	1 cut(s)	506
BpuEI	CTTGAG	1 cut(s)	402
Bsa29I	ATCGAT	1 cut(s)	294
BsaI	GGTCTC	2 cut(s)	116, 507
Bsc4I	CCNNNNNNNGG	1 cut(s)	467
Bse1I	ACTGG	1 cut(s)	489
Bse21I	CCTNAGG	1 cut(s)	450
Bse3DI	GCAATG	1 cut(s)	340
BseCI	ATCGAT	1 cut(s)	294
BseLI	CCNNNNNNNGG	1 cut(s)	467
BseMI	GCAATG	1 cut(s)	340
BseMII	CTCAG	1 cut(s)	464
BseNI	ACTGG	1 cut(s)	489
BseXI	GCAGC	1 cut(s)	121
BsgI	GTGCAG	1 cut(s)	244
BshFI	GGCC	1 cut(s)	601
BshNI	GGYRCC	1 cut(s)	202
BshVI	ATCGAT	1 cut(s)	294
BslI	CCNNNNNNNGG	1 cut(s)	467
BsmAI	GTCTC	2 cut(s)	116, 507
BsnI	GGCC	1 cut(s)	601
Bso31I	GGTCTC	2 cut(s)	116, 507
Bsp1407I	TGTACA	1 cut(s)	589
Bsp143I	GATC	4 cut(s)	4, 265, 317, 356
BspACI	CCGC	1 cut(s)	248
BspANI	GGCC	1 cut(s)	601
BspCNI	CTCAG	1 cut(s)	463
BspDI	ATCGAT	1 cut(s)	294
BspHI	TCATGA	1 cut(s)	553
BspLI	GGNNCC	2 cut(s)	6, 204
BspMI	ACCTGC	1 cut(s)	214
BspPI	GGATC	2 cut(s)	12, 351
BspQI	GCTCTTC	1 cut(s)	431
BspT107I	GGYRCC	1 cut(s)	202
BspTNI	GGTCTC	2 cut(s)	116, 507
BsrDI	GCAATG	1 cut(s)	340
BsrGI	TGTACA	1 cut(s)	589
BsrI	ACTGG	1 cut(s)	489
BssMI	GATC	4 cut(s)	4, 265, 317, 356
Bst4CI	ACNGT	1 cut(s)	187
Bst6I	CTCTTC	4 cut(s)	99, 119, 431, 563
BstAUI	TGTACA	1 cut(s)	589
BstDEI	CTNAG	2 cut(s)	450, 546
BstKTI	GATC	4 cut(s)	7, 268, 320, 359
BstMAI	GTCTC	2 cut(s)	116, 507
BstMBI	GATC	4 cut(s)	4, 265, 317, 356
BstNSI	RCATGY	2 cut(s)	62, 434
BstV1I	GCAGC	1 cut(s)	121
BstX2I	RGATCY	4 cut(s)	4, 265, 317, 356
BstYI	RGATCY	4 cut(s)	4, 265, 317, 356
Bsu15I	ATCGAT	1 cut(s)	294
Bsu36I	CCTNAGG	1 cut(s)	450
BsuRI	GGCC	1 cut(s)	601
BsuTUI	ATCGAT	1 cut(s)	294
BveI	ACCTGC	1 cut(s)	214
CaiI	CAGNNNCTG	1 cut(s)	258
CciI	TCATGA	1 cut(s)	553
ClaI	ATCGAT	1 cut(s)	294
Csp6I	GTAC	1 cut(s)	590
CviAII	CATG	6 cut(s)	59, 93, 401, 431, 554, 593
CviJI	RGCY	6 cut(s)	134, 191, 311, 422, 492, 601
CviKI_1	RGCY	6 cut(s)	134, 191, 311, 422, 492, 601
CviQI	GTAC	1 cut(s)	590
DdeI	CTNAG	2 cut(s)	450, 546
DpnI	GATC	4 cut(s)	6, 267, 319, 358
DpnII	GATC	4 cut(s)	4, 265, 317, 356
Eam1104I	CTCTTC	4 cut(s)	99, 119, 431, 563
EarI	CTCTTC	4 cut(s)	99, 119, 431, 563
Eco31I	GGTCTC	2 cut(s)	116, 507
Eco81I	CCTNAGG	1 cut(s)	450
FaeI	CATG	6 cut(s)	62, 96, 404, 434, 557, 596
FatI	CATG	6 cut(s)	58, 92, 400, 430, 553, 592
Fnu4HI	GCNGC	1 cut(s)	135
Fsp4HI	GCNGC	1 cut(s)	135
GluI	GCNGC	1 cut(s)	135
GsuI	CTGGAG	1 cut(s)	506
HaeIII	GGCC	1 cut(s)	601
Hin1II	CATG	6 cut(s)	62, 96, 404, 434, 557, 596
HinfI	GANTC	3 cut(s)	17, 255, 515
HphI	GGTGA	1 cut(s)	524
Hpy188I	TCNGA	2 cut(s)	9, 390
Hpy188III	TCNNGA	4 cut(s)	25, 360, 425, 554
HpyAV	CCTTC	1 cut(s)	31
HpyCH4III	ACNGT	1 cut(s)	187
HpyCH4IV	ACGT	1 cut(s)	583
HpyCH4V	TGCA	6 cut(s)	38, 137, 209, 261, 291, 383
HpyF3I	CTNAG	2 cut(s)	450, 546
HpySE526I	ACGT	1 cut(s)	583
Hsp92II	CATG	6 cut(s)	62, 96, 404, 434, 557, 596
Kzo9I	GATC	4 cut(s)	4, 265, 317, 356
LguI	GCTCTTC	1 cut(s)	431
LmnI	GCTCC	1 cut(s)	131
LpnPI	CCDG	7 cut(s)	219, 306, 373, 437, 453, 470, 618
Lsp1109I	GCAGC	1 cut(s)	121
LweI	GCATC	3 cut(s)	59, 300, 464
MaeII	ACGT	1 cut(s)	583
MaeIII	GTNAC	2 cut(s)	61, 367
MalI	GATC	4 cut(s)	6, 267, 319, 358
MboI	GATC	4 cut(s)	4, 265, 317, 356
MboII	GAAGA	6 cut(s)	106, 116, 366, 448, 580, 625
MflI	RGATCY	4 cut(s)	4, 265, 317, 356
MluCI	AATT	4 cut(s)	33, 99, 193, 557
MlyI	GAGTC	2 cut(s)	264, 524
MmeI	TCCRAC	1 cut(s)	566
MnlI	CCTC	4 cut(s)	73, 100, 459, 612
MseI	TTAA	2 cut(s)	164, 537
MslI	CAYNNNNRTG	1 cut(s)	282
NdeII	GATC	4 cut(s)	4, 265, 317, 356
NlaIII	CATG	6 cut(s)	62, 96, 404, 434, 557, 596
NlaIV	GGNNCC	2 cut(s)	6, 204
NmuCI	GTSAC	2 cut(s)	61, 367
NspI	RCATGY	2 cut(s)	62, 434
PagI	TCATGA	1 cut(s)	553
PaqCI	CACCTGC	1 cut(s)	214
PciI	ACATGT	2 cut(s)	58, 430
PciSI	GCTCTTC	1 cut(s)	431
PfeI	GAWTC	1 cut(s)	17
PflFI	GACNNNGTC	1 cut(s)	254
PkrI	GCNGC	1 cut(s)	136
PleI	GAGTC	2 cut(s)	263, 523
PpsI	GAGTC	2 cut(s)	263, 523
PscI	ACATGT	2 cut(s)	58, 430
PsiI	TTATAA	1 cut(s)	239
PspN4I	GGNNCC	2 cut(s)	6, 204
PstNI	CAGNNNCTG	1 cut(s)	258
PsuI	RGATCY	4 cut(s)	4, 265, 317, 356
PsyI	GACNNNGTC	1 cut(s)	254
RsaI	GTAC	1 cut(s)	591
RsaNI	GTAC	1 cut(s)	590
RseI	CAYNNNNRTG	1 cut(s)	282
SapI	GCTCTTC	1 cut(s)	431
SaqAI	TTAA	2 cut(s)	164, 537
SatI	GCNGC	1 cut(s)	135
Sau3AI	GATC	4 cut(s)	4, 265, 317, 356
SchI	GAGTC	2 cut(s)	264, 524
SfaNI	GCATC	3 cut(s)	59, 300, 464
SmiMI	CAYNNNNRTG	1 cut(s)	282
SmlI	CTYRAG	1 cut(s)	417
SmoI	CTYRAG	1 cut(s)	417
Sse9I	AATT	4 cut(s)	33, 99, 193, 557
SsiI	CCGC	1 cut(s)	248
TaaI	ACNGT	1 cut(s)	187
TaiI	ACGT	1 cut(s)	586
TaqI	TCGA	1 cut(s)	294
TasI	AATT	4 cut(s)	33, 99, 193, 557
TatI	WGTACW	1 cut(s)	589
TfiI	GAWTC	1 cut(s)	17
Tru1I	TTAA	2 cut(s)	164, 537
Tru9I	TTAA	2 cut(s)	164, 537
TseFI	GTSAC	2 cut(s)	61, 367
TseI	GCWGC	1 cut(s)	134
Tsp45I	GTSAC	2 cut(s)	61, 367
TspDTI	ATGAA	6 cut(s)	329, 407, 463, 542, 570, 581
Tth111I	GACNNNGTC	1 cut(s)	254
XceI	RCATGY	2 cut(s)	62, 434

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.