Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0000627

Physical Location & Seq

Genomic Coordinates Reverse (-)

7852027 .. 7853626

Gene Structure 1600 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG097600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGAATGGGGGATACTATAAAGAGGACAATATCCCCTGCCAGATTGAAGAGGGTCTCTTCTTGGGTTCTTTTGGAGCTGCAAATGACGAGGAAGAACTGAACAGGTTGAACATTACTCACATTTTGACAGTGGGTAGTGCAATGCCTCCTGCATATCCAAATGATTTTGTCTATAAGGTTTTAAAAGATGGGAACATTCTTCTGTGCTGTGGGGCAATGACGGCTTTGCTTCGAAATCTTGATCATTGCATCTCAAGCTATTCATTTGTTATACGAAAATCTGAGATAGAGGATGCAGAGGAATGCTTCAAACTTTTTTCTTTGGAAGAGGCGGCTAAATTTGACGAAGTGACCCTTGCCAATGTGAACAACTTCAAAAAGCGCTCAAAAAACCAGTCACCTAATGCAATCCACAAAGAATATATAGTGGTAAGATCCAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1517

Protein Analysis

147

Amino Acids

16.57

Weight (kDa)

5.23

Isoelectric Point (pI)

67.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF1517	PF07466	67 - 144	2.5e-10	Protein of unknown function (DUF1517)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000627)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06110 AT3G06110 AT3G06110 AT3G23610 AT3G23610 AT3G23610 AT3G23610 AT3G23610 AT3G23610
fragaria_vesca	FvH4_4g14540 FvH4_4g14540 FvH4_4g14540 FvH4_4g14540 FvH4_4g14540 FvH4_4g14540 FvH4_4g14580 FvH4_4g14580 FvH4_4g14700
malus_domestica	MD16G1184700.v1.1
prunus_persica	Prupe.1G151900_v2.0.a1 Prupe.1G151900_v2.0.a1 Prupe.1G151900_v2.0.a1 Prupe.1G151900_v2.0.a1 Prupe.1G151900_v2.0.a1 Prupe.1G151900_v2.0.a1
pyrus_communis	pycom13g15890 pycom16g15510
rosa_chinensis	RchiOBHm_Chr4g0396121 RchiOBHm_Chr4g0418191 RchiOBHm_Chr4g0418241 RchiOBHm_Chr4g0418281 RchiOBHm_Chr7g0218781
rosa_laevigata	RLG00000007880 RLG00000007884 RLG00000009570
rosa_multiflora	Rmu_co8157318.1_g000001 Rmu_sc0000032.1_g000004 Rmu_sc0000032.1_g000006 Rmu_sc0000408.1_g000002 Rmu_sc0006325.1_g000026 Rmu_sc0009634.1_g000005
rosa_roxburghii	Rroxscaffold_5G00340920 Rroxscaffold_5G00361410 Rroxscaffold_5G00361430 Rroxscaffold_5G00361460
rosa_rugosa	Rorug01G0235100 Rorug03G0352200.1 Rorug04G0150700 Rorug04G0151000 Rorug04G0151300 Rorug04G0151700 Rorug04G0151800 Rorug07G0049500
rosa_samantha	Rh2BG097600 Rh2CG099500 Rh2DG096900 Rh4AG213100 Rh4AG213300 Rh4BG064600 Rh4BG217300 Rh4BG217600 Rh4BG217700 Rh4CG071200 Rh4CG224400 Rh4CG224700 Rh4CG225000 Rh4DG061500 Rh4DG211300 Rh4DG211500 Rh4DG211900 Rh5AG356200 Rh6DG255000 Rh7AG321200 Rh7CG337700 Rh7DG282300
rosa_wichuraiana	Rw4G018090 Rw4G018120 Rw6G006740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	332
AclWI	GGATC	1 cut(s)	429
AcsI	RAATTY	1 cut(s)	338
AfeI	AGCGCT	1 cut(s)	383
AgsI	TTSAA	4 cut(s)	47, 109, 310, 376
AluBI	AGCT	2 cut(s)	77, 258
AluI	AGCT	2 cut(s)	77, 258
Alw26I	GTCTC	1 cut(s)	59
AlwI	GGATC	1 cut(s)	429
Aor51HI	AGCGCT	1 cut(s)	383
ApeKI	GCWGC	1 cut(s)	77
ApoI	RAATTY	1 cut(s)	338
ArsI	GACNNNNNNTTYG	2 cut(s)	380, 412
Asp700I	GAANNNNTTC	1 cut(s)	371
AspLEI	GCGC	1 cut(s)	384
AsuHPI	GGTGA	1 cut(s)	390
AsuII	TTCGAA	1 cut(s)	232
BbvI	GCAGC	1 cut(s)	64
BccI	CCATC	1 cut(s)	182
BceAI	ACGGC	1 cut(s)	237
BciVI	GTATCC	1 cut(s)	5
BclI	TGATCA	1 cut(s)	241
BcoDI	GTCTC	1 cut(s)	59
BfoI	RGCGCY	1 cut(s)	385
BfuI	GTATCC	1 cut(s)	5
BisI	GCNGC	2 cut(s)	78, 333
BlsI	GCNGC	2 cut(s)	79, 334
BmsI	GCATC	2 cut(s)	258, 283
Bpu14I	TTCGAA	1 cut(s)	232
BpuEI	CTTGAG	1 cut(s)	238
BsaI	GGTCTC	1 cut(s)	59
Bse1I	ACTGG	1 cut(s)	394
Bse3DI	GCAATG	3 cut(s)	147, 222, 244
BseGI	GGATG	1 cut(s)	298
BseMI	GCAATG	3 cut(s)	147, 222, 244
BseMII	CTCAG	1 cut(s)	273
BseNI	ACTGG	1 cut(s)	394
BseXI	GCAGC	1 cut(s)	64
BsmAI	GTCTC	1 cut(s)	59
BsmI	GAATGC	1 cut(s)	308
Bso31I	GGTCTC	1 cut(s)	59
Bsp119I	TTCGAA	1 cut(s)	232
Bsp143I	GATC	2 cut(s)	241, 434
BspACI	CCGC	1 cut(s)	332
BspCNI	CTCAG	1 cut(s)	274
BspPI	GGATC	1 cut(s)	429
BspT104I	TTCGAA	1 cut(s)	232
BspTNI	GGTCTC	1 cut(s)	59
BsrDI	GCAATG	3 cut(s)	147, 222, 244
BsrI	ACTGG	1 cut(s)	394
BssMI	GATC	2 cut(s)	241, 434
Bst4CI	ACNGT	1 cut(s)	130
Bst6I	CTCTTC	3 cut(s)	42, 62, 321
BstBI	TTCGAA	1 cut(s)	232
BstDEI	CTNAG	1 cut(s)	282
BstF5I	GGATG	1 cut(s)	298
BstH2I	RGCGCY	1 cut(s)	385
BstHHI	GCGC	1 cut(s)	384
BstKTI	GATC	2 cut(s)	244, 437
BstMAI	GTCTC	1 cut(s)	59
BstMBI	GATC	2 cut(s)	241, 434
BstMWI	GCNNNNNNNGC	2 cut(s)	221, 255
BstV1I	GCAGC	1 cut(s)	64
BstX2I	RGATCY	1 cut(s)	434
BstYI	RGATCY	1 cut(s)	434
BsuI	GTATCC	1 cut(s)	5
BtsCI	GGATG	1 cut(s)	298
BtsIMutI	CAGTG	1 cut(s)	135
CfoI	GCGC	1 cut(s)	384
CviJI	RGCY	4 cut(s)	77, 224, 258, 335
CviKI_1	RGCY	4 cut(s)	77, 224, 258, 335
DdeI	CTNAG	1 cut(s)	282
DpnI	GATC	2 cut(s)	243, 436
DpnII	GATC	2 cut(s)	241, 434
DraI	TTTAAA	1 cut(s)	183
Eam1104I	CTCTTC	3 cut(s)	42, 62, 321
EarI	CTCTTC	3 cut(s)	42, 62, 321
Eco31I	GGTCTC	1 cut(s)	59
Eco47III	AGCGCT	1 cut(s)	383
FaiI	YATR	6 cut(s)	18, 154, 174, 272, 423, 425
FalI	AAGNNNNNCTT	2 cut(s)	339, 371
FbaI	TGATCA	1 cut(s)	241
Fnu4HI	GCNGC	2 cut(s)	78, 333
FokI	GGATG	1 cut(s)	305
Fsp4HI	GCNGC	2 cut(s)	78, 333
GlaI	GCGC	1 cut(s)	383
GluI	GCNGC	2 cut(s)	78, 333
HaeII	RGCGCY	1 cut(s)	385
HhaI	GCGC	1 cut(s)	384
Hin6I	GCGC	1 cut(s)	382
HinP1I	GCGC	1 cut(s)	382
HphI	GGTGA	1 cut(s)	390
Hpy166II	GTNNAC	1 cut(s)	367
Hpy188I	TCNGA	1 cut(s)	283
Hpy188III	TCNNGA	2 cut(s)	239, 438
Hpy8I	GTNNAC	1 cut(s)	367
HpyCH4III	ACNGT	1 cut(s)	130
HpyCH4V	TGCA	6 cut(s)	80, 140, 152, 249, 296, 407
HpyF10VI	GCNNNNNNNGC	2 cut(s)	221, 255
HpyF3I	CTNAG	1 cut(s)	282
HspAI	GCGC	1 cut(s)	382
Ksp22I	TGATCA	1 cut(s)	241
Kzo9I	GATC	2 cut(s)	241, 434
LmnI	GCTCC	1 cut(s)	74
LpnPI	CCDG	5 cut(s)	49, 53, 88, 162, 407
Lsp1109I	GCAGC	1 cut(s)	64
LweI	GCATC	2 cut(s)	258, 283
MaeIII	GTNAC	2 cut(s)	349, 396
MalI	GATC	2 cut(s)	243, 436
MboI	GATC	2 cut(s)	241, 434
MboII	GAAGA	5 cut(s)	49, 59, 104, 191, 338
MflI	RGATCY	1 cut(s)	434
MluCI	AATT	1 cut(s)	338
MnlI	CCTC	7 cut(s)	16, 43, 82, 156, 283, 292, 322
MroXI	GAANNNNTTC	1 cut(s)	371
MseI	TTAA	1 cut(s)	182
Mva1269I	GAATGC	1 cut(s)	308
MwoI	GCNNNNNNNGC	2 cut(s)	221, 255
NdeII	GATC	2 cut(s)	241, 434
NmuCI	GTSAC	2 cut(s)	349, 396
NspV	TTCGAA	1 cut(s)	232
PctI	GAATGC	1 cut(s)	308
PdmI	GAANNNNTTC	1 cut(s)	371
PkrI	GCNGC	2 cut(s)	79, 334
PsuI	RGATCY	1 cut(s)	434
SaqAI	TTAA	1 cut(s)	182
SatI	GCNGC	2 cut(s)	78, 333
Sau3AI	GATC	2 cut(s)	241, 434
SetI	ASST	5 cut(s)	79, 107, 180, 260, 403
SfaNI	GCATC	2 cut(s)	258, 283
SfuI	TTCGAA	1 cut(s)	232
SmlI	CTYRAG	1 cut(s)	253
SmoI	CTYRAG	1 cut(s)	253
Sse9I	AATT	1 cut(s)	338
SsiI	CCGC	1 cut(s)	332
TaaI	ACNGT	1 cut(s)	130
TaqI	TCGA	1 cut(s)	232
TasI	AATT	1 cut(s)	338
TauI	GCSGC	1 cut(s)	335
Tru1I	TTAA	1 cut(s)	182
Tru9I	TTAA	1 cut(s)	182
TscAI	CASTG	1 cut(s)	135
TseFI	GTSAC	2 cut(s)	349, 396
TseI	GCWGC	1 cut(s)	77
Tsp45I	GTSAC	2 cut(s)	349, 396
TspDTI	ATGAA	2 cut(s)	17, 252
TspRI	CASTG	1 cut(s)	135
XapI	RAATTY	1 cut(s)	338
XmnI	GAANNNNTTC	1 cut(s)	371

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.