Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0000627

Physical Location & Seq

Genomic Coordinates Reverse (-)

37731955 .. 37732925

Gene Structure 971 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG337700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGGTGCATCCTCTGTGGGGAATTGATGATGATGATATTCCATGCCAAATTGAAGAGGGCCTCTTCTTGGGTTCTGTTGCAGCTGCAAAAAACTGGCAGAAGCTGAAGGACTTAAATGTCACGCACATTCTGACCGTGGCCAATTCTTTGCCACCTAAATATCCAAACCGGTTTGTGTATAAGGTTTTGAATGTCGAAGACAGAATAACCACAGACCTGCAACAACACTTTGATGAGTGTTTCAATTATATCGAAGAAGCTAAAACATCAGGGGGTGGTGTGTTGGTTCATAGCTTTGCAGGAAGCTCGAGAAGTGCGACTATTGTATTATCTTATCTGATGAAGAAGCATCGTATGAGTCTACATCAAGCCTATGAACATGTGAAGAGAGAGAGACCAGAGGCAGAACCTAATGTTGGATTTATTTTACAACTGCTGCGGAACCTGGAAAAAAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0005488 GO:0005515 GO:0005516 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008138 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0036211 GO:0042578 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04360 ko04810 map04360 map04810

Pfam Domains

Protein Families

DSPc

Protein Analysis

152

Amino Acids

17.39

Weight (kDa)

6.65

Isoelectric Point (pI)

51.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DSPc	PF00782	21 - 146	2.6e-29	Dual specificity phosphatase, catalytic domain
Tc-R-P	PF22785	24 - 115	8.3e-06	Polymorphic toxin system, DSP-PTPase phosphatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000627)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06110 AT3G06110 AT3G06110 AT3G23610 AT3G23610 AT3G23610 AT3G23610 AT3G23610 AT3G23610
fragaria_vesca	FvH4_4g14540 FvH4_4g14540 FvH4_4g14540 FvH4_4g14540 FvH4_4g14540 FvH4_4g14540 FvH4_4g14580 FvH4_4g14580 FvH4_4g14700
malus_domestica	MD16G1184700.v1.1
prunus_persica	Prupe.1G151900_v2.0.a1 Prupe.1G151900_v2.0.a1 Prupe.1G151900_v2.0.a1 Prupe.1G151900_v2.0.a1 Prupe.1G151900_v2.0.a1 Prupe.1G151900_v2.0.a1
pyrus_communis	pycom13g15890 pycom16g15510
rosa_chinensis	RchiOBHm_Chr4g0396121 RchiOBHm_Chr4g0418191 RchiOBHm_Chr4g0418241 RchiOBHm_Chr4g0418281 RchiOBHm_Chr7g0218781
rosa_laevigata	RLG00000007880 RLG00000007884 RLG00000009570
rosa_multiflora	Rmu_co8157318.1_g000001 Rmu_sc0000032.1_g000004 Rmu_sc0000032.1_g000006 Rmu_sc0000408.1_g000002 Rmu_sc0006325.1_g000026 Rmu_sc0009634.1_g000005
rosa_roxburghii	Rroxscaffold_5G00340920 Rroxscaffold_5G00361410 Rroxscaffold_5G00361430 Rroxscaffold_5G00361460
rosa_rugosa	Rorug01G0235100 Rorug03G0352200.1 Rorug04G0150700 Rorug04G0151000 Rorug04G0151300 Rorug04G0151700 Rorug04G0151800 Rorug07G0049500
rosa_samantha	Rh2BG097600 Rh2CG099500 Rh2DG096900 Rh4AG213100 Rh4AG213300 Rh4BG064600 Rh4BG217300 Rh4BG217600 Rh4BG217700 Rh4CG071200 Rh4CG224400 Rh4CG224700 Rh4CG225000 Rh4DG061500 Rh4DG211300 Rh4DG211500 Rh4DG211900 Rh5AG356200 Rh6DG255000 Rh7AG321200 Rh7CG337700 Rh7DG282300
rosa_wichuraiana	Rw4G018090 Rw4G018120 Rw6G006740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	116
Acc36I	ACCTGC	1 cut(s)	225
AccI	GTMKAC	1 cut(s)	361
AciI	CCGC	1 cut(s)	439
AcoI	YGGCCR	1 cut(s)	138
AcuI	CTGAAG	1 cut(s)	125
AfiI	CCNNNNNNNGG	3 cut(s)	17, 67, 416
AflIII	ACRYGT	1 cut(s)	379
AgeI	ACCGGT	1 cut(s)	168
AgsI	TTSAA	3 cut(s)	53, 190, 244
AjnI	CCWGG	1 cut(s)	444
AjuI	GAANNNNNNNTTGG	2 cut(s)	399, 431
AluBI	AGCT	5 cut(s)	83, 103, 260, 294, 306
AluI	AGCT	5 cut(s)	83, 103, 260, 294, 306
Alw26I	GTCTC	1 cut(s)	388
AlwNI	CAGNNNCTG	1 cut(s)	103
Ama87I	CYCGRG	1 cut(s)	307
AoxI	GGCC	2 cut(s)	58, 138
ApeKI	GCWGC	3 cut(s)	80, 83, 436
AsiGI	ACCGGT	1 cut(s)	168
AspS9I	GGNCC	1 cut(s)	58
AvaI	CYCGRG	1 cut(s)	307
BalI	TGGCCA	1 cut(s)	140
BbsI	GAAGAC	1 cut(s)	204
BbvI	GCAGC	3 cut(s)	70, 92, 423
BcgI	CGANNNNNNTGC	2 cut(s)	288, 322
BciT130I	CCWGG	1 cut(s)	446
BcoDI	GTCTC	1 cut(s)	388
BfuAI	ACCTGC	1 cut(s)	225
BisI	GCNGC	3 cut(s)	81, 84, 437
BlsI	GCNGC	3 cut(s)	82, 85, 438
Bme1390I	CCNGG	1 cut(s)	446
BmeT110I	CYCGRG	1 cut(s)	307
BmgT120I	GGNCC	1 cut(s)	58
BmiI	GGNNCC	1 cut(s)	443
BmrFI	CCNGG	1 cut(s)	446
BmsI	GCATC	2 cut(s)	16, 358
BpiI	GAAGAC	1 cut(s)	204
BsaI	GGTCTC	1 cut(s)	388
BsaJI	CCNNGG	1 cut(s)	135
BsaWI	WCCGGW	1 cut(s)	168
Bsc4I	CCNNNNNNNGG	3 cut(s)	17, 67, 416
Bse118I	RCCGGY	1 cut(s)	168
Bse1I	ACTGG	1 cut(s)	98
BseBI	CCWGG	1 cut(s)	446
BseDI	CCNNGG	1 cut(s)	135
BseGI	GGATG	1 cut(s)	7
BseLI	CCNNNNNNNGG	3 cut(s)	17, 67, 416
BseNI	ACTGG	1 cut(s)	98
BseXI	GCAGC	3 cut(s)	70, 92, 423
BshFI	GGCC	2 cut(s)	60, 140
BshTI	ACCGGT	1 cut(s)	168
BsiHKCI	CYCGRG	1 cut(s)	307
BsiSI	CCGG	1 cut(s)	169
BslI	CCNNNNNNNGG	3 cut(s)	17, 67, 416
BsmAI	GTCTC	1 cut(s)	388
BsnI	GGCC	2 cut(s)	60, 140
Bso31I	GGTCTC	1 cut(s)	388
BsoBI	CYCGRG	1 cut(s)	307
BspACI	CCGC	1 cut(s)	439
BspANI	GGCC	2 cut(s)	60, 140
BspLI	GGNNCC	1 cut(s)	443
BspMI	ACCTGC	1 cut(s)	225
BspTNI	GGTCTC	1 cut(s)	388
BsrFI	RCCGGY	1 cut(s)	168
BsrI	ACTGG	1 cut(s)	98
BssAI	RCCGGY	1 cut(s)	168
BssECI	CCNNGG	1 cut(s)	135
Bst2UI	CCWGG	1 cut(s)	446
Bst4CI	ACNGT	1 cut(s)	136
Bst6I	CTCTTC	3 cut(s)	48, 68, 380
BstDSI	CCRYGG	1 cut(s)	135
BstF5I	GGATG	1 cut(s)	7
BstMAI	GTCTC	1 cut(s)	388
BstNI	CCWGG	1 cut(s)	446
BstNSI	RCATGY	1 cut(s)	383
BstSCI	CCNGG	1 cut(s)	444
BstV1I	GCAGC	3 cut(s)	70, 92, 423
BstV2I	GAAGAC	1 cut(s)	204
BsuRI	GGCC	2 cut(s)	60, 140
BtgI	CCRYGG	1 cut(s)	135
BtsCI	GGATG	1 cut(s)	7
BveI	ACCTGC	1 cut(s)	225
CaiI	CAGNNNCTG	1 cut(s)	103
Cfr10I	RCCGGY	1 cut(s)	168
Cfr13I	GGNCC	1 cut(s)	58
CspAI	ACCGGT	1 cut(s)	168
CviAII	CATG	2 cut(s)	42, 380
CviJI	RGCY	8 cut(s)	60, 83, 103, 140, 260, 294, 306, 371
CviKI_1	RGCY	8 cut(s)	60, 83, 103, 140, 260, 294, 306, 371
DrdI	GACNNNNNNGTC	1 cut(s)	116
DseDI	GACNNNNNNGTC	1 cut(s)	116
EaeI	YGGCCR	1 cut(s)	138
Eam1104I	CTCTTC	3 cut(s)	48, 68, 380
EarI	CTCTTC	3 cut(s)	48, 68, 380
Eco31I	GGTCTC	1 cut(s)	388
Eco57I	CTGAAG	1 cut(s)	125
Eco88I	CYCGRG	1 cut(s)	307
EcoO109I	RGGNCCY	1 cut(s)	58
EcoRII	CCWGG	1 cut(s)	444
FaeI	CATG	2 cut(s)	45, 383
FaiI	YATR	7 cut(s)	43, 180, 249, 291, 356, 375, 381
FatI	CATG	2 cut(s)	41, 379
FblI	GTMKAC	1 cut(s)	361
Fnu4HI	GCNGC	3 cut(s)	81, 84, 437
Fsp4HI	GCNGC	3 cut(s)	81, 84, 437
GluI	GCNGC	3 cut(s)	81, 84, 437
HaeIII	GGCC	2 cut(s)	60, 140
HapII	CCGG	1 cut(s)	169
Hin1II	CATG	2 cut(s)	45, 383
HinfI	GANTC	1 cut(s)	358
HpaII	CCGG	1 cut(s)	169
Hpy166II	GTNNAC	1 cut(s)	362
Hpy188I	TCNGA	2 cut(s)	132, 339
Hpy188III	TCNNGA	1 cut(s)	309
Hpy8I	GTNNAC	1 cut(s)	362
HpyAV	CCTTC	1 cut(s)	100
HpyCH4III	ACNGT	1 cut(s)	136
HpyCH4V	TGCA	5 cut(s)	7, 80, 86, 220, 299
Hsp92II	CATG	2 cut(s)	45, 383
LpnPI	CCDG	7 cut(s)	79, 182, 230, 255, 285, 411, 431
Lsp1109I	GCAGC	3 cut(s)	70, 92, 423
LweI	GCATC	2 cut(s)	16, 358
MaeIII	GTNAC	1 cut(s)	118
MboII	GAAGA	6 cut(s)	55, 65, 209, 266, 355, 397
MlsI	TGGCCA	1 cut(s)	140
MluCI	AATT	4 cut(s)	21, 48, 142, 244
MluNI	TGGCCA	1 cut(s)	140
MlyI	GAGTC	1 cut(s)	367
MmeI	TCCRAC	1 cut(s)	397
MnlI	CCTC	4 cut(s)	21, 49, 71, 394
Mox20I	TGGCCA	1 cut(s)	140
MscI	TGGCCA	1 cut(s)	140
MseI	TTAA	1 cut(s)	113
MslI	CAYNNNNRTG	1 cut(s)	231
Msp20I	TGGCCA	1 cut(s)	140
MspA1I	CMGCKG	1 cut(s)	83
MspI	CCGG	1 cut(s)	169
MspR9I	CCNGG	1 cut(s)	446
MvaI	CCWGG	1 cut(s)	446
NlaIII	CATG	2 cut(s)	45, 383
NlaIV	GGNNCC	1 cut(s)	443
NmuCI	GTSAC	1 cut(s)	118
NspI	RCATGY	1 cut(s)	383
PaeR7I	CTCGAG	1 cut(s)	307
PciI	ACATGT	1 cut(s)	379
PcsI	WCGNNNNNNNCGW	1 cut(s)	314
PinAI	ACCGGT	1 cut(s)	168
PkrI	GCNGC	3 cut(s)	82, 85, 438
PleI	GAGTC	1 cut(s)	366
PpsI	GAGTC	1 cut(s)	366
PscI	ACATGT	1 cut(s)	379
Psp6I	CCWGG	1 cut(s)	444
PspGI	CCWGG	1 cut(s)	444
PspN4I	GGNNCC	1 cut(s)	443
PspPI	GGNCC	1 cut(s)	58
PstNI	CAGNNNCTG	1 cut(s)	103
PvuII	CAGCTG	1 cut(s)	83
RseI	CAYNNNNRTG	1 cut(s)	231
SaqAI	TTAA	1 cut(s)	113
SatI	GCNGC	3 cut(s)	81, 84, 437
Sau96I	GGNCC	1 cut(s)	58
SchI	GAGTC	1 cut(s)	367
ScrFI	CCNGG	1 cut(s)	446
SfaNI	GCATC	2 cut(s)	16, 358
Sfr274I	CTCGAG	1 cut(s)	307
SlaI	CTCGAG	1 cut(s)	307
SmiMI	CAYNNNNRTG	1 cut(s)	231
SmlI	CTYRAG	1 cut(s)	307
SmoI	CTYRAG	1 cut(s)	307
Sse9I	AATT	4 cut(s)	21, 48, 142, 244
SsiI	CCGC	1 cut(s)	439
StyD4I	CCNGG	1 cut(s)	444
TaaI	ACNGT	1 cut(s)	136
TaqI	TCGA	3 cut(s)	195, 252, 308
TasI	AATT	4 cut(s)	21, 48, 142, 244
Tru1I	TTAA	1 cut(s)	113
Tru9I	TTAA	1 cut(s)	113
TseFI	GTSAC	1 cut(s)	118
TseI	GCWGC	3 cut(s)	80, 83, 436
Tsp45I	GTSAC	1 cut(s)	118
TspDTI	ATGAA	3 cut(s)	278, 356, 390
XceI	RCATGY	1 cut(s)	383
XhoI	CTCGAG	1 cut(s)	307
XmiI	GTMKAC	1 cut(s)	361

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.