Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0000627

Physical Location & Seq

Genomic Coordinates Reverse (-)

7679368 .. 7680964

Gene Structure 1597 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG096900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGAATGGGGGATACTATAAAGAGGACAATATCCCCTGCCAGATTGAAGAGGGTCTCTTCTTGGGTTCTTTTGGAGCTGCAAATGACGAGGAAGAACTGAACAGGTTGAACATTACTCACATTTTGACAGTGGGTAGTGCAATGCCTCCTGCATATCCAAATGATTATGTCTATAAGGTTATACGAAAATCTGAGATAGAGGATGCAGAGGAATGCTTCAAACTTTTTTCTTTGGAAGAGGCGGCTAAATTTGACGAAGTGACCCTTGCCAATGTGAACAACTTCAAAAAGCGCTCAAAAAACCAGTCACCTAATGCAATCCACAAAGAATATATAGTGGTAAGATCCAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0005488 GO:0005515 GO:0005516 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008138 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0036211 GO:0042578 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04360 ko04810 map04360 map04810

Pfam Domains

Protein Families

DSPc

Protein Analysis

117

Amino Acids

13.34

Weight (kDa)

5.06

Isoelectric Point (pI)

75.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF1517	PF07466	62 - 114	6.5e-07	Protein of unknown function (DUF1517)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000627)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06110 AT3G06110 AT3G06110 AT3G23610 AT3G23610 AT3G23610 AT3G23610 AT3G23610 AT3G23610
fragaria_vesca	FvH4_4g14540 FvH4_4g14540 FvH4_4g14540 FvH4_4g14540 FvH4_4g14540 FvH4_4g14540 FvH4_4g14580 FvH4_4g14580 FvH4_4g14700
malus_domestica	MD16G1184700.v1.1
prunus_persica	Prupe.1G151900_v2.0.a1 Prupe.1G151900_v2.0.a1 Prupe.1G151900_v2.0.a1 Prupe.1G151900_v2.0.a1 Prupe.1G151900_v2.0.a1 Prupe.1G151900_v2.0.a1
pyrus_communis	pycom13g15890 pycom16g15510
rosa_chinensis	RchiOBHm_Chr4g0396121 RchiOBHm_Chr4g0418191 RchiOBHm_Chr4g0418241 RchiOBHm_Chr4g0418281 RchiOBHm_Chr7g0218781
rosa_laevigata	RLG00000007880 RLG00000007884 RLG00000009570
rosa_multiflora	Rmu_co8157318.1_g000001 Rmu_sc0000032.1_g000004 Rmu_sc0000032.1_g000006 Rmu_sc0000408.1_g000002 Rmu_sc0006325.1_g000026 Rmu_sc0009634.1_g000005
rosa_roxburghii	Rroxscaffold_5G00340920 Rroxscaffold_5G00361410 Rroxscaffold_5G00361430 Rroxscaffold_5G00361460
rosa_rugosa	Rorug01G0235100 Rorug03G0352200.1 Rorug04G0150700 Rorug04G0151000 Rorug04G0151300 Rorug04G0151700 Rorug04G0151800 Rorug07G0049500
rosa_samantha	Rh2BG097600 Rh2CG099500 Rh2DG096900 Rh4AG213100 Rh4AG213300 Rh4BG064600 Rh4BG217300 Rh4BG217600 Rh4BG217700 Rh4CG071200 Rh4CG224400 Rh4CG224700 Rh4CG225000 Rh4DG061500 Rh4DG211300 Rh4DG211500 Rh4DG211900 Rh5AG356200 Rh6DG255000 Rh7AG321200 Rh7CG337700 Rh7DG282300
rosa_wichuraiana	Rw4G018090 Rw4G018120 Rw6G006740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	242
AclWI	GGATC	1 cut(s)	339
AcsI	RAATTY	1 cut(s)	248
AfeI	AGCGCT	1 cut(s)	293
AgsI	TTSAA	4 cut(s)	47, 109, 220, 286
AluBI	AGCT	1 cut(s)	77
AluI	AGCT	1 cut(s)	77
Alw26I	GTCTC	1 cut(s)	59
AlwI	GGATC	1 cut(s)	339
Aor51HI	AGCGCT	1 cut(s)	293
ApeKI	GCWGC	1 cut(s)	77
ApoI	RAATTY	1 cut(s)	248
ArsI	GACNNNNNNTTYG	2 cut(s)	290, 322
Asp700I	GAANNNNTTC	1 cut(s)	281
AspLEI	GCGC	1 cut(s)	294
AsuHPI	GGTGA	1 cut(s)	300
BbvI	GCAGC	1 cut(s)	64
BciVI	GTATCC	1 cut(s)	5
BcoDI	GTCTC	1 cut(s)	59
BfoI	RGCGCY	1 cut(s)	295
BfuI	GTATCC	1 cut(s)	5
BisI	GCNGC	2 cut(s)	78, 243
BlsI	GCNGC	2 cut(s)	79, 244
BmsI	GCATC	1 cut(s)	193
BsaI	GGTCTC	1 cut(s)	59
Bse1I	ACTGG	1 cut(s)	304
Bse3DI	GCAATG	1 cut(s)	147
BseGI	GGATG	1 cut(s)	208
BseMI	GCAATG	1 cut(s)	147
BseMII	CTCAG	1 cut(s)	183
BseNI	ACTGG	1 cut(s)	304
BseXI	GCAGC	1 cut(s)	64
BsmAI	GTCTC	1 cut(s)	59
BsmI	GAATGC	1 cut(s)	218
Bso31I	GGTCTC	1 cut(s)	59
Bsp143I	GATC	1 cut(s)	344
BspACI	CCGC	1 cut(s)	242
BspCNI	CTCAG	1 cut(s)	184
BspPI	GGATC	1 cut(s)	339
BspTNI	GGTCTC	1 cut(s)	59
BsrDI	GCAATG	1 cut(s)	147
BsrI	ACTGG	1 cut(s)	304
BssMI	GATC	1 cut(s)	344
Bst4CI	ACNGT	1 cut(s)	130
Bst6I	CTCTTC	3 cut(s)	42, 62, 231
BstDEI	CTNAG	1 cut(s)	192
BstF5I	GGATG	1 cut(s)	208
BstH2I	RGCGCY	1 cut(s)	295
BstHHI	GCGC	1 cut(s)	294
BstKTI	GATC	1 cut(s)	347
BstMAI	GTCTC	1 cut(s)	59
BstMBI	GATC	1 cut(s)	344
BstV1I	GCAGC	1 cut(s)	64
BstX2I	RGATCY	1 cut(s)	344
BstYI	RGATCY	1 cut(s)	344
BsuI	GTATCC	1 cut(s)	5
BtsCI	GGATG	1 cut(s)	208
BtsIMutI	CAGTG	1 cut(s)	135
CfoI	GCGC	1 cut(s)	294
CviJI	RGCY	2 cut(s)	77, 245
CviKI_1	RGCY	2 cut(s)	77, 245
DdeI	CTNAG	1 cut(s)	192
DpnI	GATC	1 cut(s)	346
DpnII	GATC	1 cut(s)	344
Eam1104I	CTCTTC	3 cut(s)	42, 62, 231
EarI	CTCTTC	3 cut(s)	42, 62, 231
Eco31I	GGTCTC	1 cut(s)	59
Eco47III	AGCGCT	1 cut(s)	293
FaiI	YATR	7 cut(s)	18, 154, 168, 174, 182, 333, 335
FalI	AAGNNNNNCTT	2 cut(s)	249, 281
Fnu4HI	GCNGC	2 cut(s)	78, 243
FokI	GGATG	1 cut(s)	215
Fsp4HI	GCNGC	2 cut(s)	78, 243
GlaI	GCGC	1 cut(s)	293
GluI	GCNGC	2 cut(s)	78, 243
HaeII	RGCGCY	1 cut(s)	295
HhaI	GCGC	1 cut(s)	294
Hin6I	GCGC	1 cut(s)	292
HinP1I	GCGC	1 cut(s)	292
HphI	GGTGA	1 cut(s)	300
Hpy166II	GTNNAC	1 cut(s)	277
Hpy188I	TCNGA	1 cut(s)	193
Hpy188III	TCNNGA	1 cut(s)	348
Hpy8I	GTNNAC	1 cut(s)	277
HpyCH4III	ACNGT	1 cut(s)	130
HpyCH4V	TGCA	5 cut(s)	80, 140, 152, 206, 317
HpyF3I	CTNAG	1 cut(s)	192
HspAI	GCGC	1 cut(s)	292
Kzo9I	GATC	1 cut(s)	344
LmnI	GCTCC	1 cut(s)	74
LpnPI	CCDG	5 cut(s)	49, 53, 88, 162, 317
Lsp1109I	GCAGC	1 cut(s)	64
LweI	GCATC	1 cut(s)	193
MaeIII	GTNAC	2 cut(s)	259, 306
MalI	GATC	1 cut(s)	346
MboI	GATC	1 cut(s)	344
MboII	GAAGA	4 cut(s)	49, 59, 104, 248
MflI	RGATCY	1 cut(s)	344
MluCI	AATT	1 cut(s)	248
MnlI	CCTC	7 cut(s)	16, 43, 82, 156, 193, 202, 232
MroXI	GAANNNNTTC	1 cut(s)	281
Mva1269I	GAATGC	1 cut(s)	218
NdeII	GATC	1 cut(s)	344
NmuCI	GTSAC	2 cut(s)	259, 306
PctI	GAATGC	1 cut(s)	218
PdmI	GAANNNNTTC	1 cut(s)	281
PkrI	GCNGC	2 cut(s)	79, 244
PsuI	RGATCY	1 cut(s)	344
SatI	GCNGC	2 cut(s)	78, 243
Sau3AI	GATC	1 cut(s)	344
SetI	ASST	4 cut(s)	79, 107, 180, 313
SfaNI	GCATC	1 cut(s)	193
SgeI	CNNG	8 cut(s)	48, 52, 73, 100, 115, 161, 278, 316
Sse9I	AATT	1 cut(s)	248
SsiI	CCGC	1 cut(s)	242
TaaI	ACNGT	1 cut(s)	130
TasI	AATT	1 cut(s)	248
TauI	GCSGC	1 cut(s)	245
TscAI	CASTG	1 cut(s)	135
TseFI	GTSAC	2 cut(s)	259, 306
TseI	GCWGC	1 cut(s)	77
Tsp45I	GTSAC	2 cut(s)	259, 306
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	135
XapI	RAATTY	1 cut(s)	248
XmnI	GAANNNNTTC	1 cut(s)	281

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.