Rorug04G0151000

protein tyrosine/serine/threonine phosphatase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0000627
Physical Location & Seq
Reverse (-)
26455895 .. 26456560
666 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0151000.1

Sequence Viewer

Length: 666 bp
ATGCTACTTGATCCGACCCTCCCAACCTTAATCCTTAATTTCACTCACCCTGTTCCTTTTTATGATCCCCTTCTACCAACTGATGTTCCAGCTTTCGTCCCAACCCCAGATCCTCTTCACTCAGGGTTTTATGGGGGACCTTCTCAATCACTTCCTCCCTTGGGATCCTTGGTTACCTTAGCTCATCAATTCCAACATCTTCGTGTTCGTAAGCATCTGGAGGATGCTTTGGCTGAGACAACTAGGCAGCTGAAAAAATACAAGGCAATGGAATTACAGGAACCAGAGACCCTCCCACCTACCTCTCACAAAATCACTGCTTCCGAAGCCAAAAAGGGGAAATCAACTCTTTCAGTTTCGGGTCGGGGCAGCGGTCGCTGGGGTCGTCCTCGCAAAGCCGCATCTACACAGCCTATCCCATCATCCTCTACTACTGATTTCCAGGTTAGTGGTGGCATCTCTTCATCACTTTCAACTATTCTGGCACCTTCTTTCCACTCTGGGTTTGGTAATGGTCAGGCTGTGTCTTCAGTGGAGATGGTTTCTATTCCAATGGTCATGGGTACTTCTACTGTTGCACCACCAAGCATTTCGGTTCCTCTTGTTTCATCCAGTGCTGATAAAGGCATAGGTAGCTGGCCTGGTGCAGTTACAGGTGCGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000188 GO:0000302 GO:0001101 GO:0001932 GO:0001933 GO:0002682 GO:0002683 GO:0003674 GO:0003700 GO:0003824 GO:0004721 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006355 GO:0006464 GO:0006469 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0007154 GO:0007165 GO:0007275 GO:0008138 GO:0008150 GO:0008152 GO:0008544 GO:0009791 GO:0009888 GO:0009889 GO:0009892 GO:0009913 GO:0009966 GO:0009968 GO:0009987 GO:0010035 GO:0010193 GO:0010363 GO:0010374 GO:0010468 GO:0010556 GO:0010563 GO:0010605 GO:0010646 GO:0010648 GO:0010941 GO:0016020 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019219 GO:0019220 GO:0019222 GO:0019538 GO:0023051 GO:0023052 GO:0023057 GO:0030154 GO:0030855 GO:0031323 GO:0031324 GO:0031326 GO:0031347 GO:0031348 GO:0031399 GO:0031400 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0033549 GO:0033554 GO:0033673 GO:0034051 GO:0034599 GO:0035556 GO:0036211 GO:0042221 GO:0042325 GO:0042326 GO:0042493 GO:0042578 GO:0043067 GO:0043069 GO:0043086 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043405 GO:0043407 GO:0043408 GO:0043409 GO:0043412 GO:0043549 GO:0044092 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045088 GO:0045824 GO:0045859 GO:0045936 GO:0046677 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048856 GO:0048869 GO:0050776 GO:0050777 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051174 GO:0051246 GO:0051248 GO:0051252 GO:0051338 GO:0051348 GO:0051716 GO:0060255 GO:0060429 GO:0060548 GO:0065007 GO:0065009 GO:0070887 GO:0071704 GO:0071900 GO:0071901 GO:0071944 GO:0080090 GO:0080134 GO:0080135 GO:0090558 GO:0140096 GO:0140110 GO:1901564 GO:1901700 GO:1902531 GO:1902532 GO:1903506 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04016 ko04360 ko04810 map04016 map04360 map04810
Pfam Domains
Protein Families
DSPc

Protein Analysis

221

Amino Acids

23.22

Weight (kDa)

8.93

Isoelectric Point (pI)

44.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 484
AciI CCGC 3 cut(s) 372, 399, 659
AclWI GGATC 5 cut(s) 5, 59, 104, 159, 172
AcuI CTGAAG 1 cut(s) 513
AfaI GTAC 1 cut(s) 565
AfiI CCNNNNNNNGG 2 cut(s) 161, 336
AgsI TTSAA 1 cut(s) 474
AjnI CCWGG 2 cut(s) 441, 640
AluBI AGCT 4 cut(s) 92, 182, 250, 636
AluI AGCT 4 cut(s) 92, 182, 250, 636
Alw26I GTCTC 2 cut(s) 230, 281
AlwI GGATC 5 cut(s) 5, 59, 104, 159, 172
AoxI GGCC 1 cut(s) 638
ApeKI GCWGC 2 cut(s) 247, 369
AspS9I GGNCC 1 cut(s) 137
AsuHPI GGTGA 1 cut(s) 38
AvaII GGWCC 1 cut(s) 137
BamHI GGATCC 1 cut(s) 164
BanI GGYRCC 1 cut(s) 484
BbsI GAAGAC 1 cut(s) 519
BbvI GCAGC 2 cut(s) 259, 381
BccI CCATC 2 cut(s) 427, 532
BciT130I CCWGG 2 cut(s) 443, 642
BcoDI GTCTC 2 cut(s) 230, 281
BfaI CTAG 1 cut(s) 243
BisI GCNGC 3 cut(s) 248, 370, 399
BlsI GCNGC 3 cut(s) 249, 371, 400
Bme1390I CCNGG 2 cut(s) 443, 642
Bme18I GGWCC 1 cut(s) 137
BmgT120I GGNCC 1 cut(s) 137
BmiI GGNNCC 5 cut(s) 138, 166, 282, 486, 597
BmrFI CCNGG 2 cut(s) 443, 642
BmsI GCATC 4 cut(s) 214, 223, 410, 465
BpiI GAAGAC 1 cut(s) 519
BpmI CTGGAG 1 cut(s) 239
Bpu10I CCTNAGC 1 cut(s) 178
BsaI GGTCTC 1 cut(s) 281
BsaJI CCNNGG 2 cut(s) 159, 168
Bsc4I CCNNNNNNNGG 2 cut(s) 161, 336
Bse1I ACTGG 1 cut(s) 612
Bse3DI GCAATG 1 cut(s) 273
BseBI CCWGG 2 cut(s) 443, 642
BseDI CCNNGG 2 cut(s) 159, 168
BseGI GGATG 3 cut(s) 229, 422, 608
BseLI CCNNNNNNNGG 2 cut(s) 161, 336
BseMI GCAATG 1 cut(s) 273
BseMII CTCAG 2 cut(s) 135, 225
BseNI ACTGG 1 cut(s) 612
BseXI GCAGC 2 cut(s) 259, 381
BseYI CCCAGC 1 cut(s) 378
BsgI GTGCAG 1 cut(s) 666
Bsh1285I CGRYCG 1 cut(s) 376
BshFI GGCC 1 cut(s) 640
BshNI GGYRCC 1 cut(s) 484
BsiEI CGRYCG 1 cut(s) 376
BslFI GGGAC 2 cut(s) 83, 150
BslI CCNNNNNNNGG 2 cut(s) 161, 336
BsmAI GTCTC 2 cut(s) 230, 281
BsmFI GGGAC 2 cut(s) 83, 150
BsnI GGCC 1 cut(s) 640
Bso31I GGTCTC 1 cut(s) 281
Bsp143I GATC 4 cut(s) 10, 64, 109, 164
BspACI CCGC 3 cut(s) 372, 399, 659
BspANI GGCC 1 cut(s) 640
BspCNI CTCAG 2 cut(s) 134, 226
BspLI GGNNCC 5 cut(s) 138, 166, 282, 486, 597
BspPI GGATC 5 cut(s) 5, 59, 104, 159, 172
BspT107I GGYRCC 1 cut(s) 484
BspTNI GGTCTC 1 cut(s) 281
BsrDI GCAATG 1 cut(s) 273
BsrI ACTGG 1 cut(s) 612
BssECI CCNNGG 2 cut(s) 159, 168
BssMI GATC 4 cut(s) 10, 64, 109, 164
BssT1I CCWWGG 2 cut(s) 159, 168
Bst2UI CCWGG 2 cut(s) 443, 642
Bst4CI ACNGT 1 cut(s) 574
Bst6I CTCTTC 2 cut(s) 120, 466
BstC8I GCNNGC 1 cut(s) 638
BstDEI CTNAG 3 cut(s) 121, 178, 234
BstEII GGTNACC 1 cut(s) 172
BstF5I GGATG 3 cut(s) 229, 422, 608
BstKTI GATC 4 cut(s) 13, 67, 112, 167
BstMAI GTCTC 2 cut(s) 230, 281
BstMBI GATC 4 cut(s) 10, 64, 109, 164
BstMCI CGRYCG 1 cut(s) 376
BstMWI GCNNNNNNNGC 3 cut(s) 326, 375, 633
BstNI CCWGG 2 cut(s) 443, 642
BstPI GGTNACC 1 cut(s) 172
BstSCI CCNGG 2 cut(s) 441, 640
BstV1I GCAGC 2 cut(s) 259, 381
BstV2I GAAGAC 1 cut(s) 519
BstX2I RGATCY 2 cut(s) 109, 164
BstXI CCANNNNNNTGG 1 cut(s) 449
BstYI RGATCY 2 cut(s) 109, 164
BsuRI GGCC 1 cut(s) 640
BtsCI GGATG 3 cut(s) 229, 422, 608
BtsI GCAGTG 1 cut(s) 315
BtsIMutI CAGTG 3 cut(s) 315, 537, 619
Cac8I GCNNGC 1 cut(s) 638
Cfr13I GGNCC 1 cut(s) 137
Csp6I GTAC 1 cut(s) 564
CviAII CATG 1 cut(s) 559
CviQI GTAC 1 cut(s) 564
DdeI CTNAG 3 cut(s) 121, 178, 234
DpnI GATC 4 cut(s) 12, 66, 111, 166
DpnII GATC 4 cut(s) 10, 64, 109, 164
Eam1104I CTCTTC 2 cut(s) 120, 466
EarI CTCTTC 2 cut(s) 120, 466
Eco130I CCWWGG 2 cut(s) 159, 168
Eco31I GGTCTC 1 cut(s) 281
Eco47I GGWCC 1 cut(s) 137
Eco57I CTGAAG 1 cut(s) 513
Eco91I GGTNACC 1 cut(s) 172
EcoO109I RGGNCCY 1 cut(s) 137
EcoO65I GGTNACC 1 cut(s) 172
EcoRII CCWGG 2 cut(s) 441, 640
EcoT14I CCWWGG 2 cut(s) 159, 168
ErhI CCWWGG 2 cut(s) 159, 168
FaeI CATG 1 cut(s) 562
FaiI YATR 4 cut(s) 63, 132, 560, 629
FaqI GGGAC 2 cut(s) 83, 150
FatI CATG 1 cut(s) 558
Fnu4HI GCNGC 3 cut(s) 248, 370, 399
FokI GGATG 3 cut(s) 236, 409, 595
Fsp4HI GCNGC 3 cut(s) 248, 370, 399
FspBI CTAG 1 cut(s) 243
GluI GCNGC 3 cut(s) 248, 370, 399
GsaI CCCAGC 1 cut(s) 382
GsuI CTGGAG 1 cut(s) 239
HaeIII GGCC 1 cut(s) 640
Hin1II CATG 1 cut(s) 562
HphI GGTGA 1 cut(s) 38
Hpy188I TCNGA 2 cut(s) 15, 325
Hpy188III TCNNGA 1 cut(s) 218
HpyAV CCTTC 3 cut(s) 80, 150, 498
HpyCH4III ACNGT 1 cut(s) 574
HpyCH4V TGCA 2 cut(s) 578, 647
HpyF10VI GCNNNNNNNGC 3 cut(s) 326, 375, 633
HpyF3I CTNAG 3 cut(s) 121, 178, 234
Hsp92II CATG 1 cut(s) 562
Kzo9I GATC 4 cut(s) 10, 64, 109, 164
Lsp1109I GCAGC 2 cut(s) 259, 381
LweI GCATC 4 cut(s) 214, 223, 410, 465
MaeI CTAG 1 cut(s) 243
MaeIII GTNAC 2 cut(s) 172, 649
MalI GATC 4 cut(s) 12, 66, 111, 166
MboI GATC 4 cut(s) 10, 64, 109, 164
MboII GAAGA 4 cut(s) 107, 191, 453, 519
MflI RGATCY 2 cut(s) 109, 164
MluCI AATT 3 cut(s) 37, 188, 272
MmeI TCCRAC 2 cut(s) 38, 217
MnlI CCTC 9 cut(s) 29, 123, 165, 214, 302, 313, 399, 436, 609
MseI TTAA 2 cut(s) 29, 36
MslI CAYNNNNRTG 1 cut(s) 201
MspA1I CMGCKG 2 cut(s) 250, 372
MspR9I CCNGG 2 cut(s) 443, 642
MvaI CCWGG 2 cut(s) 443, 642
MwoI GCNNNNNNNGC 3 cut(s) 326, 375, 633
NdeII GATC 4 cut(s) 10, 64, 109, 164
NlaIII CATG 1 cut(s) 562
NlaIV GGNNCC 5 cut(s) 138, 166, 282, 486, 597
PcsI WCGNNNNNNNCGW 1 cut(s) 382
PkrI GCNGC 3 cut(s) 249, 371, 400
PpuMI RGGWCCY 1 cut(s) 137
Psp5II RGGWCCY 1 cut(s) 137
Psp6I CCWGG 2 cut(s) 441, 640
PspEI GGTNACC 1 cut(s) 172
PspFI CCCAGC 1 cut(s) 378
PspGI CCWGG 2 cut(s) 441, 640
PspN4I GGNNCC 5 cut(s) 138, 166, 282, 486, 597
PspPI GGNCC 1 cut(s) 137
PspPPI RGGWCCY 1 cut(s) 137
PsuI RGATCY 2 cut(s) 109, 164
PvuII CAGCTG 1 cut(s) 250
RsaI GTAC 1 cut(s) 565
RsaNI GTAC 1 cut(s) 564
RseI CAYNNNNRTG 1 cut(s) 201
SaqAI TTAA 2 cut(s) 29, 36
SatI GCNGC 3 cut(s) 248, 370, 399
Sau3AI GATC 4 cut(s) 10, 64, 109, 164
Sau96I GGNCC 1 cut(s) 137
ScrFI CCNGG 2 cut(s) 443, 642
SfaNI GCATC 4 cut(s) 214, 223, 410, 465
SinI GGWCC 1 cut(s) 137
SmiMI CAYNNNNRTG 1 cut(s) 201
Sse9I AATT 3 cut(s) 37, 188, 272
SsiI CCGC 3 cut(s) 372, 399, 659
SspMI CTAG 1 cut(s) 243
StyD4I CCNGG 2 cut(s) 441, 640
StyI CCWWGG 2 cut(s) 159, 168
TaaI ACNGT 1 cut(s) 574
TasI AATT 3 cut(s) 37, 188, 272
TauI GCSGC 1 cut(s) 401
Tru1I TTAA 2 cut(s) 29, 36
Tru9I TTAA 2 cut(s) 29, 36
TscAI CASTG 3 cut(s) 322, 537, 619
TseI GCWGC 2 cut(s) 247, 369
TspDTI ATGAA 2 cut(s) 453, 597
TspRI CASTG 3 cut(s) 322, 537, 619
VpaK11BI GGWCC 1 cut(s) 137
XcmI CCANNNNNNNNNTGG 2 cut(s) 449, 503
XspI CTAG 1 cut(s) 243
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.