Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0000627

Physical Location & Seq

Genomic Coordinates Reverse (-)

10773617 .. 10775559

Gene Structure 1943 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G006740.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGGCTCAGGTAGATGATTACCTTCGGAAACAAGCAGCTGAATTGTTGCAAGCTATGAATGGGGGATACTATAAAGAGGACAATATCCCCTGCCAGATTGAAGAGGGTCTCTTCTTGGGTTCTTTTGGAGCTGCAAATGACGAGGAAGAACTGAACAGGTTGAACATTACTCACATTTTGACAGTGGGTGTTTCTGACGGACCAAGTATGAACATAAAACAGCACTTTGATGAGTGTTTCGATTACATTGAGGAAGCTAAAAGATCTGGTGGCAGTGTGCTGGTTCATTGCTTTGTGGGAAGATCCAGAAGCCATTTCCCCGAACAAAATAATGGTAAGAACACAATTACTTCTAGTGGTAACTTGCAAGTTTCTCCTTTAGATAGGTTTTTGTTCTCATTTTGGTTTCTGCTCAAGAAGAATTGTCAGTTGCAAATAAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0005488 GO:0005515 GO:0005516 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008138 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0036211 GO:0042578 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04360 ko04810 map04360 map04810

Pfam Domains

Protein Families

DSPc

Protein Analysis

147

Amino Acids

16.61

Weight (kDa)

5.14

Isoelectric Point (pI)

67.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DSPc	PF00782	56 - 104	1e-09	Dual specificity phosphatase, catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000627)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06110 AT3G06110 AT3G06110 AT3G23610 AT3G23610 AT3G23610 AT3G23610 AT3G23610 AT3G23610
fragaria_vesca	FvH4_4g14540 FvH4_4g14540 FvH4_4g14540 FvH4_4g14540 FvH4_4g14540 FvH4_4g14540 FvH4_4g14580 FvH4_4g14580 FvH4_4g14700
malus_domestica	MD16G1184700.v1.1
prunus_persica	Prupe.1G151900_v2.0.a1 Prupe.1G151900_v2.0.a1 Prupe.1G151900_v2.0.a1 Prupe.1G151900_v2.0.a1 Prupe.1G151900_v2.0.a1 Prupe.1G151900_v2.0.a1
pyrus_communis	pycom13g15890 pycom16g15510
rosa_chinensis	RchiOBHm_Chr4g0396121 RchiOBHm_Chr4g0418191 RchiOBHm_Chr4g0418241 RchiOBHm_Chr4g0418281 RchiOBHm_Chr7g0218781
rosa_laevigata	RLG00000007880 RLG00000007884 RLG00000009570
rosa_multiflora	Rmu_co8157318.1_g000001 Rmu_sc0000032.1_g000004 Rmu_sc0000032.1_g000006 Rmu_sc0000408.1_g000002 Rmu_sc0006325.1_g000026 Rmu_sc0009634.1_g000005
rosa_roxburghii	Rroxscaffold_5G00340920 Rroxscaffold_5G00361410 Rroxscaffold_5G00361430 Rroxscaffold_5G00361460
rosa_rugosa	Rorug01G0235100 Rorug03G0352200.1 Rorug04G0150700 Rorug04G0151000 Rorug04G0151300 Rorug04G0151700 Rorug04G0151800 Rorug07G0049500
rosa_samantha	Rh2BG097600 Rh2CG099500 Rh2DG096900 Rh4AG213100 Rh4AG213300 Rh4BG064600 Rh4BG217300 Rh4BG217600 Rh4BG217700 Rh4CG071200 Rh4CG224400 Rh4CG224700 Rh4CG225000 Rh4DG061500 Rh4DG211300 Rh4DG211500 Rh4DG211900 Rh5AG356200 Rh6DG255000 Rh7AG321200 Rh7CG337700 Rh7DG282300
rosa_wichuraiana	Rw4G018090 Rw4G018120 Rw6G006740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	297
AgsI	TTSAA	2 cut(s)	101, 163
AluBI	AGCT	4 cut(s)	38, 53, 131, 257
AluI	AGCT	4 cut(s)	38, 53, 131, 257
Alw26I	GTCTC	1 cut(s)	113
AlwI	GGATC	1 cut(s)	297
ApeKI	GCWGC	2 cut(s)	35, 131
AspS9I	GGNCC	1 cut(s)	200
AvaII	GGWCC	1 cut(s)	200
BbvI	GCAGC	2 cut(s)	47, 118
BciVI	GTATCC	1 cut(s)	59
BcoDI	GTCTC	1 cut(s)	113
BfaI	CTAG	2 cut(s)	354, 442
BfuI	GTATCC	1 cut(s)	59
BglII	AGATCT	1 cut(s)	263
BisI	GCNGC	2 cut(s)	36, 132
BlsI	GCNGC	2 cut(s)	37, 133
Bme18I	GGWCC	1 cut(s)	200
BmgT120I	GGNCC	1 cut(s)	200
Bpu10I	CCTNAGC	1 cut(s)	6
BpuEI	CTTGAG	1 cut(s)	398
BsaI	GGTCTC	1 cut(s)	113
Bse3DI	GCAATG	1 cut(s)	286
BseMI	GCAATG	1 cut(s)	286
BseMII	CTCAG	1 cut(s)	20
BseXI	GCAGC	2 cut(s)	47, 118
BsmAI	GTCTC	1 cut(s)	113
Bso31I	GGTCTC	1 cut(s)	113
Bsp143I	GATC	2 cut(s)	263, 302
BspCNI	CTCAG	1 cut(s)	19
BspPI	GGATC	1 cut(s)	297
BspTNI	GGTCTC	1 cut(s)	113
BsrDI	GCAATG	1 cut(s)	286
BssMI	GATC	2 cut(s)	263, 302
Bst4CI	ACNGT	1 cut(s)	184
Bst6I	CTCTTC	2 cut(s)	96, 116
BstC8I	GCNNGC	1 cut(s)	51
BstDEI	CTNAG	1 cut(s)	6
BstKTI	GATC	2 cut(s)	266, 305
BstMAI	GTCTC	1 cut(s)	113
BstMBI	GATC	2 cut(s)	263, 302
BstV1I	GCAGC	2 cut(s)	47, 118
BstX2I	RGATCY	2 cut(s)	263, 302
BstYI	RGATCY	2 cut(s)	263, 302
BsuI	GTATCC	1 cut(s)	59
BtsI	GCAGTG	1 cut(s)	280
BtsIMutI	CAGTG	2 cut(s)	189, 280
Cac8I	GCNNGC	1 cut(s)	51
Cfr13I	GGNCC	1 cut(s)	200
CviJI	RGCY	6 cut(s)	5, 38, 53, 131, 257, 312
CviKI_1	RGCY	6 cut(s)	5, 38, 53, 131, 257, 312
DdeI	CTNAG	1 cut(s)	6
DpnI	GATC	2 cut(s)	265, 304
DpnII	GATC	2 cut(s)	263, 302
Eam1104I	CTCTTC	2 cut(s)	96, 116
EarI	CTCTTC	2 cut(s)	96, 116
Eco31I	GGTCTC	1 cut(s)	113
Eco47I	GGWCC	1 cut(s)	200
FaiI	YATR	4 cut(s)	56, 72, 209, 215
Fnu4HI	GCNGC	2 cut(s)	36, 132
Fsp4HI	GCNGC	2 cut(s)	36, 132
FspBI	CTAG	2 cut(s)	354, 442
GluI	GCNGC	2 cut(s)	36, 132
Hpy188I	TCNGA	2 cut(s)	27, 196
Hpy188III	TCNNGA	2 cut(s)	306, 415
HpyAV	CCTTC	1 cut(s)	32
HpyCH4III	ACNGT	1 cut(s)	184
HpyCH4V	TGCA	4 cut(s)	49, 134, 367, 433
HpyF3I	CTNAG	1 cut(s)	6
Kzo9I	GATC	2 cut(s)	263, 302
LmnI	GCTCC	1 cut(s)	128
LpnPI	CCDG	6 cut(s)	103, 107, 142, 252, 266, 319
Lsp1109I	GCAGC	2 cut(s)	47, 118
MaeI	CTAG	2 cut(s)	354, 442
MaeIII	GTNAC	1 cut(s)	359
MalI	GATC	2 cut(s)	265, 304
MboI	GATC	2 cut(s)	263, 302
MboII	GAAGA	5 cut(s)	103, 113, 158, 312, 430
MflI	RGATCY	2 cut(s)	263, 302
MluCI	AATT	3 cut(s)	41, 345, 421
MnlI	CCTC	4 cut(s)	70, 97, 136, 244
MslI	CAYNNNNRTG	1 cut(s)	228
MspA1I	CMGCKG	1 cut(s)	38
NdeII	GATC	2 cut(s)	263, 302
PkrI	GCNGC	2 cut(s)	37, 133
PspPI	GGNCC	1 cut(s)	200
PsuI	RGATCY	2 cut(s)	263, 302
PvuII	CAGCTG	1 cut(s)	38
RseI	CAYNNNNRTG	1 cut(s)	228
SatI	GCNGC	2 cut(s)	36, 132
Sau3AI	GATC	2 cut(s)	263, 302
Sau96I	GGNCC	1 cut(s)	200
SetI	ASST	8 cut(s)	12, 24, 40, 55, 133, 161, 259, 389
SinI	GGWCC	1 cut(s)	200
SmiMI	CAYNNNNRTG	1 cut(s)	228
SmlI	CTYRAG	1 cut(s)	413
SmoI	CTYRAG	1 cut(s)	413
Sse9I	AATT	3 cut(s)	41, 345, 421
SspMI	CTAG	2 cut(s)	354, 442
TaaI	ACNGT	1 cut(s)	184
TaqI	TCGA	1 cut(s)	240
TasI	AATT	3 cut(s)	41, 345, 421
TscAI	CASTG	2 cut(s)	189, 280
TseI	GCWGC	2 cut(s)	35, 131
TspDTI	ATGAA	3 cut(s)	71, 224, 275
TspGWI	ACGGA	1 cut(s)	213
TspRI	CASTG	2 cut(s)	189, 280
VpaK11BI	GGWCC	1 cut(s)	200
XspI	CTAG	2 cut(s)	354, 442

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.