Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0000627

Physical Location & Seq

Genomic Coordinates Reverse (-)

18215612 .. 18218792

Gene Structure 3181 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g14540.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGGATCCGATAGATGACTCCCTTAGGAAACAATTATCTGCTTTGTTGAGAGTTATACATGTGACGAGGTGTTGTAAAGAAGACAAAGTTCCATGCCAAATTGAAGAGGGTCTCTTCTTGGGTTCCATAGGATCTGCACATAACAAGGATGAACTTAAAGAGTTAAACATCACACACATTTTGACTGTGGCTGGTTCATTGGCACCTGCTTATCCAAATGAATTTGTGTATAAGGTTTTGCATGTTGCGGACAAAGAATCGACAGACCTGAAACAGCACTTTGATGAATGTTTCAATTTTATTGAAGAAGCTAAAAGATCTGGTGGTGTGTTGGTTCATTGCTTTGTGGGAAAATCCAGGAGTGTGACTATTGTTCTTGCTTATCTGATGAAGAAGCATGGTATGAGTCTATCTGAAGCTCTTGAACATGTGAAGAGCAGACGGCCACAGGCATCTCCCAATACTGGTTTTATGTCACAACTGCAGGCCTTTGAAAGGTTCCTTCATGAAAATGAAGAAAACAAGACAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0005488 GO:0005515 GO:0005516 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008138 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0036211 GO:0042578 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04360 ko04810 map04360 map04810

Pfam Domains

Protein Families

DSPc

Protein Analysis

178

Amino Acids

19.97

Weight (kDa)

6.5

Isoelectric Point (pI)

61.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DSPc	PF00782	38 - 166	5.2e-32	Dual specificity phosphatase, catalytic domain
PTP-SAK	PF22784	47 - 145	4.1e-06	Swiss Army Knife protein, DSP-PTPase phosphatase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000627)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06110 AT3G06110 AT3G06110 AT3G23610 AT3G23610 AT3G23610 AT3G23610 AT3G23610 AT3G23610
fragaria_vesca	FvH4_4g14540 FvH4_4g14540 FvH4_4g14540 FvH4_4g14540 FvH4_4g14540 FvH4_4g14540 FvH4_4g14580 FvH4_4g14580 FvH4_4g14700
malus_domestica	MD16G1184700.v1.1
prunus_persica	Prupe.1G151900_v2.0.a1 Prupe.1G151900_v2.0.a1 Prupe.1G151900_v2.0.a1 Prupe.1G151900_v2.0.a1 Prupe.1G151900_v2.0.a1 Prupe.1G151900_v2.0.a1
pyrus_communis	pycom13g15890 pycom16g15510
rosa_chinensis	RchiOBHm_Chr4g0396121 RchiOBHm_Chr4g0418191 RchiOBHm_Chr4g0418241 RchiOBHm_Chr4g0418281 RchiOBHm_Chr7g0218781
rosa_laevigata	RLG00000007880 RLG00000007884 RLG00000009570
rosa_multiflora	Rmu_co8157318.1_g000001 Rmu_sc0000032.1_g000004 Rmu_sc0000032.1_g000006 Rmu_sc0000408.1_g000002 Rmu_sc0006325.1_g000026 Rmu_sc0009634.1_g000005
rosa_roxburghii	Rroxscaffold_5G00340920 Rroxscaffold_5G00361410 Rroxscaffold_5G00361430 Rroxscaffold_5G00361460
rosa_rugosa	Rorug01G0235100 Rorug03G0352200.1 Rorug04G0150700 Rorug04G0151000 Rorug04G0151300 Rorug04G0151700 Rorug04G0151800 Rorug07G0049500
rosa_samantha	Rh2BG097600 Rh2CG099500 Rh2DG096900 Rh4AG213100 Rh4AG213300 Rh4BG064600 Rh4BG217300 Rh4BG217600 Rh4BG217700 Rh4CG071200 Rh4CG224400 Rh4CG224700 Rh4CG225000 Rh4DG061500 Rh4DG211300 Rh4DG211500 Rh4DG211900 Rh5AG356200 Rh6DG255000 Rh7AG321200 Rh7CG337700 Rh7DG282300
rosa_wichuraiana	Rw4G018090 Rw4G018120 Rw6G006740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	214
Acc36I	ACCTGC	1 cut(s)	214
AccB1I	GGYRCC	1 cut(s)	202
AciI	CCGC	1 cut(s)	248
AclWI	GGATC	2 cut(s)	12, 139
AcoI	YGGCCR	1 cut(s)	443
AcsI	RAATTY	1 cut(s)	221
AcuI	CTGAAG	1 cut(s)	435
AfiI	CCNNNNNNNGG	2 cut(s)	464, 495
AflIII	ACRYGT	2 cut(s)	58, 427
AgsI	TTSAA	5 cut(s)	104, 295, 305, 425, 494
AjnI	CCWGG	1 cut(s)	356
AluBI	AGCT	2 cut(s)	311, 419
AluI	AGCT	2 cut(s)	311, 419
Alw26I	GTCTC	1 cut(s)	116
AlwI	GGATC	2 cut(s)	12, 139
AoxI	GGCC	2 cut(s)	443, 486
ApoI	RAATTY	1 cut(s)	221
AxyI	CCTNAGG	1 cut(s)	23
BamHI	GGATCC	1 cut(s)	4
BanI	GGYRCC	1 cut(s)	202
BbsI	GAAGAC	1 cut(s)	87
BceAI	ACGGC	1 cut(s)	458
BciT130I	CCWGG	1 cut(s)	358
BcoDI	GTCTC	1 cut(s)	116
BfmI	CTRYAG	1 cut(s)	482
BfuAI	ACCTGC	1 cut(s)	214
BglII	AGATCT	1 cut(s)	317
Bme1390I	CCNGG	1 cut(s)	358
BmiI	GGNNCC	4 cut(s)	6, 124, 204, 500
BmrFI	CCNGG	1 cut(s)	358
BmsI	GCATC	1 cut(s)	461
BpiI	GAAGAC	1 cut(s)	87
BsaI	GGTCTC	1 cut(s)	116
Bsc4I	CCNNNNNNNGG	2 cut(s)	464, 495
Bse1I	ACTGG	1 cut(s)	469
Bse21I	CCTNAGG	1 cut(s)	23
Bse3DI	GCAATG	1 cut(s)	337
BseBI	CCWGG	1 cut(s)	358
BseGI	GGATG	1 cut(s)	154
BseLI	CCNNNNNNNGG	2 cut(s)	464, 495
BseMI	GCAATG	1 cut(s)	337
BseNI	ACTGG	1 cut(s)	469
BsgI	GTGCAG	1 cut(s)	120
BshFI	GGCC	2 cut(s)	445, 488
BshNI	GGYRCC	1 cut(s)	202
BslI	CCNNNNNNNGG	2 cut(s)	464, 495
BsmAI	GTCTC	1 cut(s)	116
BsnI	GGCC	2 cut(s)	445, 488
Bso31I	GGTCTC	1 cut(s)	116
Bsp143I	GATC	3 cut(s)	4, 131, 317
BspACI	CCGC	1 cut(s)	248
BspANI	GGCC	2 cut(s)	445, 488
BspHI	TCATGA	1 cut(s)	505
BspLI	GGNNCC	4 cut(s)	6, 124, 204, 500
BspMAI	CTGCAG	1 cut(s)	486
BspMI	ACCTGC	1 cut(s)	214
BspPI	GGATC	2 cut(s)	12, 139
BspQI	GCTCTTC	1 cut(s)	428
BspT107I	GGYRCC	1 cut(s)	202
BspTNI	GGTCTC	1 cut(s)	116
BsrDI	GCAATG	1 cut(s)	337
BsrI	ACTGG	1 cut(s)	469
BssMI	GATC	3 cut(s)	4, 131, 317
Bst2UI	CCWGG	1 cut(s)	358
Bst4CI	ACNGT	1 cut(s)	187
Bst6I	CTCTTC	3 cut(s)	99, 119, 428
BstC8I	GCNNGC	1 cut(s)	486
BstDEI	CTNAG	1 cut(s)	23
BstENI	CCTNNNNNAGG	1 cut(s)	493
BstF5I	GGATG	1 cut(s)	154
BstKTI	GATC	3 cut(s)	7, 134, 320
BstMAI	GTCTC	1 cut(s)	116
BstMBI	GATC	3 cut(s)	4, 131, 317
BstNI	CCWGG	1 cut(s)	358
BstNSI	RCATGY	3 cut(s)	62, 245, 431
BstSCI	CCNGG	1 cut(s)	356
BstSFI	CTRYAG	1 cut(s)	482
BstV2I	GAAGAC	1 cut(s)	87
BstX2I	RGATCY	3 cut(s)	4, 131, 317
BstYI	RGATCY	3 cut(s)	4, 131, 317
Bsu36I	CCTNAGG	1 cut(s)	23
BsuRI	GGCC	2 cut(s)	445, 488
BtsCI	GGATG	1 cut(s)	154
BveI	ACCTGC	1 cut(s)	214
Cac8I	GCNNGC	1 cut(s)	486
CciI	TCATGA	1 cut(s)	505
CviAII	CATG	6 cut(s)	59, 93, 242, 398, 428, 506
CviJI	RGCY	5 cut(s)	191, 311, 419, 445, 488
CviKI_1	RGCY	5 cut(s)	191, 311, 419, 445, 488
DdeI	CTNAG	1 cut(s)	23
DpnI	GATC	3 cut(s)	6, 133, 319
DpnII	GATC	3 cut(s)	4, 131, 317
EaeI	YGGCCR	1 cut(s)	443
Eam1104I	CTCTTC	3 cut(s)	99, 119, 428
EarI	CTCTTC	3 cut(s)	99, 119, 428
Eco147I	AGGCCT	1 cut(s)	488
Eco31I	GGTCTC	1 cut(s)	116
Eco57I	CTGAAG	1 cut(s)	435
Eco81I	CCTNAGG	1 cut(s)	23
EcoNI	CCTNNNNNAGG	1 cut(s)	493
EcoRII	CCWGG	1 cut(s)	356
FaeI	CATG	6 cut(s)	62, 96, 245, 401, 431, 509
FatI	CATG	6 cut(s)	58, 92, 241, 397, 427, 505
FokI	GGATG	1 cut(s)	161
HaeIII	GGCC	2 cut(s)	445, 488
Hin1II	CATG	6 cut(s)	62, 96, 245, 401, 431, 509
HinfI	GANTC	3 cut(s)	17, 257, 406
Hpy188I	TCNGA	3 cut(s)	9, 387, 415
Hpy188III	TCNNGA	2 cut(s)	422, 506
HpyAV	CCTTC	1 cut(s)	512
HpyCH4III	ACNGT	1 cut(s)	187
HpyCH4V	TGCA	3 cut(s)	137, 241, 484
HpyF3I	CTNAG	1 cut(s)	23
Hsp92II	CATG	6 cut(s)	62, 96, 245, 401, 431, 509
Kzo9I	GATC	3 cut(s)	4, 131, 317
LguI	GCTCTTC	1 cut(s)	428
LpnPI	CCDG	9 cut(s)	177, 219, 281, 306, 343, 370, 434, 450, 470
LweI	GCATC	1 cut(s)	461
MaeIII	GTNAC	3 cut(s)	61, 364, 474
MalI	GATC	3 cut(s)	6, 133, 319
MboI	GATC	3 cut(s)	4, 131, 317
MboII	GAAGA	7 cut(s)	92, 106, 116, 317, 403, 445, 527
MflI	RGATCY	3 cut(s)	4, 131, 317
MluCI	AATT	5 cut(s)	32, 99, 221, 295, 529
MlyI	GAGTC	2 cut(s)	11, 415
MnlI	CCTC	2 cut(s)	60, 100
MseI	TTAA	2 cut(s)	156, 164
MslI	CAYNNNNRTG	2 cut(s)	282, 510
MspR9I	CCNGG	1 cut(s)	358
MvaI	CCWGG	1 cut(s)	358
NdeII	GATC	3 cut(s)	4, 131, 317
NlaIII	CATG	6 cut(s)	62, 96, 245, 401, 431, 509
NlaIV	GGNNCC	4 cut(s)	6, 124, 204, 500
NmuCI	GTSAC	3 cut(s)	61, 364, 474
NspI	RCATGY	3 cut(s)	62, 245, 431
PagI	TCATGA	1 cut(s)	505
PaqCI	CACCTGC	1 cut(s)	214
PceI	AGGCCT	1 cut(s)	488
PciI	ACATGT	2 cut(s)	58, 427
PciSI	GCTCTTC	1 cut(s)	428
PfeI	GAWTC	1 cut(s)	257
PfoI	TCCNGGA	1 cut(s)	356
PleI	GAGTC	2 cut(s)	11, 414
PpsI	GAGTC	2 cut(s)	11, 414
PscI	ACATGT	2 cut(s)	58, 427
Psp6I	CCWGG	1 cut(s)	356
PspGI	CCWGG	1 cut(s)	356
PspN4I	GGNNCC	4 cut(s)	6, 124, 204, 500
PstI	CTGCAG	1 cut(s)	486
PsuI	RGATCY	3 cut(s)	4, 131, 317
RseI	CAYNNNNRTG	2 cut(s)	282, 510
SapI	GCTCTTC	1 cut(s)	428
SaqAI	TTAA	2 cut(s)	156, 164
Sau3AI	GATC	3 cut(s)	4, 131, 317
SchI	GAGTC	2 cut(s)	11, 415
ScrFI	CCNGG	1 cut(s)	358
SetI	ASST	7 cut(s)	71, 208, 237, 270, 313, 421, 500
SfaNI	GCATC	1 cut(s)	461
SfcI	CTRYAG	1 cut(s)	482
SmiMI	CAYNNNNRTG	2 cut(s)	282, 510
Sse9I	AATT	5 cut(s)	32, 99, 221, 295, 529
SseBI	AGGCCT	1 cut(s)	488
SsiI	CCGC	1 cut(s)	248
StuI	AGGCCT	1 cut(s)	488
StyD4I	CCNGG	1 cut(s)	356
TaaI	ACNGT	1 cut(s)	187
TaqI	TCGA	1 cut(s)	260
TasI	AATT	5 cut(s)	32, 99, 221, 295, 529
TfiI	GAWTC	1 cut(s)	257
Tru1I	TTAA	2 cut(s)	156, 164
Tru9I	TTAA	2 cut(s)	156, 164
TseFI	GTSAC	3 cut(s)	61, 364, 474
Tsp45I	GTSAC	3 cut(s)	61, 364, 474
TspDTI	ATGAA	9 cut(s)	165, 186, 234, 300, 326, 404, 494, 522, 528
XagI	CCTNNNNNAGG	1 cut(s)	493
XapI	RAATTY	1 cut(s)	221
XceI	RCATGY	3 cut(s)	62, 245, 431

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.