Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000627

Physical Location & Seq

Genomic Coordinates Forward (+)

8477800 .. 8479877

Gene Structure 2078 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G23610.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGAGTTCTAGAGACAGAGGATCACCTTCTTCTTCTTCGTCATCTTCTTCGTTACCAGGAATAGAAAAGTATAATGAAAAGGTGAAGAATCAGATACAAGCTCTTGTTCGTGTTATTAAAGTTGCTCGTACCTATAGAGACGACAATGTCCCTTCCCTTATTGAACAGGGTCTTTATCTTGGATCTGTTGCAGCAGCTAGTAATAAGAATGTTTTGAAATCTTACAATGTTACACATATTTTGACTGTTGCTAGTTCGTTGAGACCAGCTCATCCTGATGACTTTGTTTACAAGGTTGTTCGAGTCGTGGATAAGGAAGATACAAATCTAGAAATGTACTTCGATGAGTGTGTTGATTTCATTGATGAAGCCAAGAGACAAGGCGGTAGTGTTCTTGTTCATTGCTTTGTTGGCAAATCACGGAGTGTCACTATAGTTGTTGCTTACCTCATGAAGAAACACGGTATGACTTTAGCTCAAGCATTGCAACATGTTAAAAGCAAAAGACCCGTGGCAAGTCCTAATGCTGGTTTCATCAGACAATTACAAGACCTCGAGAAGTCTATGCAAGTGAGTGACCAGTTTTTTTCCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0005488 GO:0005515 GO:0005516 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008138 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0036211 GO:0042578 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04360 ko04810 map04360 map04810

Pfam Domains

Protein Families

DSPc

Protein Analysis

198

Amino Acids

22.02

Weight (kDa)

9.3

Isoelectric Point (pI)

48.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DSPc	PF00782	58 - 187	8.4e-35	Dual specificity phosphatase, catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000627)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06110 AT3G06110 AT3G06110 AT3G23610 AT3G23610 AT3G23610 AT3G23610 AT3G23610 AT3G23610
fragaria_vesca	FvH4_4g14540 FvH4_4g14540 FvH4_4g14540 FvH4_4g14540 FvH4_4g14540 FvH4_4g14540 FvH4_4g14580 FvH4_4g14580 FvH4_4g14700
malus_domestica	MD16G1184700.v1.1
prunus_persica	Prupe.1G151900_v2.0.a1 Prupe.1G151900_v2.0.a1 Prupe.1G151900_v2.0.a1 Prupe.1G151900_v2.0.a1 Prupe.1G151900_v2.0.a1 Prupe.1G151900_v2.0.a1
pyrus_communis	pycom13g15890 pycom16g15510
rosa_chinensis	RchiOBHm_Chr4g0396121 RchiOBHm_Chr4g0418191 RchiOBHm_Chr4g0418241 RchiOBHm_Chr4g0418281 RchiOBHm_Chr7g0218781
rosa_laevigata	RLG00000007880 RLG00000007884 RLG00000009570
rosa_multiflora	Rmu_co8157318.1_g000001 Rmu_sc0000032.1_g000004 Rmu_sc0000032.1_g000006 Rmu_sc0000408.1_g000002 Rmu_sc0006325.1_g000026 Rmu_sc0009634.1_g000005
rosa_roxburghii	Rroxscaffold_5G00340920 Rroxscaffold_5G00361410 Rroxscaffold_5G00361430 Rroxscaffold_5G00361460
rosa_rugosa	Rorug01G0235100 Rorug03G0352200.1 Rorug04G0150700 Rorug04G0151000 Rorug04G0151300 Rorug04G0151700 Rorug04G0151800 Rorug07G0049500
rosa_samantha	Rh2BG097600 Rh2CG099500 Rh2DG096900 Rh4AG213100 Rh4AG213300 Rh4BG064600 Rh4BG217300 Rh4BG217600 Rh4BG217700 Rh4CG071200 Rh4CG224400 Rh4CG224700 Rh4CG225000 Rh4DG061500 Rh4DG211300 Rh4DG211500 Rh4DG211900 Rh5AG356200 Rh6DG255000 Rh7AG321200 Rh7CG337700 Rh7DG282300
rosa_wichuraiana	Rw4G018090 Rw4G018120 Rw6G006740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	146
AciI	CCGC	1 cut(s)	384
AclWI	GGATC	2 cut(s)	28, 190
AdeI	CACNNNGTG	1 cut(s)	425
AfaI	GTAC	2 cut(s)	130, 338
AfiI	CCNNNNNNNGG	1 cut(s)	527
AflIII	ACRYGT	1 cut(s)	490
AgsI	TTSAA	2 cut(s)	164, 217
AjnI	CCWGG	1 cut(s)	55
AluBI	AGCT	4 cut(s)	101, 197, 269, 476
AluI	AGCT	4 cut(s)	101, 197, 269, 476
Alw26I	GTCTC	4 cut(s)	6, 132, 256, 370
AlwI	GGATC	2 cut(s)	28, 190
Ama87I	CYCGRG	1 cut(s)	554
ApeKI	GCWGC	2 cut(s)	191, 194
AsuHPI	GGTGA	2 cut(s)	15, 94
AvaI	CYCGRG	1 cut(s)	554
BbvI	GCAGC	2 cut(s)	203, 206
BciT130I	CCWGG	1 cut(s)	57
BcoDI	GTCTC	4 cut(s)	6, 132, 256, 370
BfaI	CTAG	4 cut(s)	9, 198, 252, 329
BfmI	CTRYAG	2 cut(s)	133, 432
BisI	GCNGC	2 cut(s)	192, 195
BlsI	GCNGC	2 cut(s)	193, 196
Bme1390I	CCNGG	1 cut(s)	57
BmeT110I	CYCGRG	1 cut(s)	554
BmrFI	CCNGG	1 cut(s)	57
BplI	GAGNNNNNCTC	2 cut(s)	253, 285
BpuEI	CTTGAG	1 cut(s)	462
BsaBI	GATNNNNATC	1 cut(s)	324
BsaI	GGTCTC	1 cut(s)	256
BsaJI	CCNNGG	1 cut(s)	510
Bsc4I	CCNNNNNNNGG	1 cut(s)	527
Bse1I	ACTGG	1 cut(s)	580
Bse3DI	GCAATG	2 cut(s)	400, 482
Bse8I	GATNNNNATC	1 cut(s)	324
BseBI	CCWGG	1 cut(s)	57
BseDI	CCNNGG	1 cut(s)	510
BseGI	GGATG	1 cut(s)	271
BseJI	GATNNNNATC	1 cut(s)	324
BseLI	CCNNNNNNNGG	1 cut(s)	527
BseMI	GCAATG	2 cut(s)	400, 482
BseNI	ACTGG	1 cut(s)	580
BseXI	GCAGC	2 cut(s)	203, 206
BsiHKCI	CYCGRG	1 cut(s)	554
BslFI	GGGAC	1 cut(s)	134
BslI	CCNNNNNNNGG	1 cut(s)	527
BsmAI	GTCTC	4 cut(s)	6, 132, 256, 370
BsmBI	CGTCTC	1 cut(s)	132
BsmFI	GGGAC	1 cut(s)	134
Bso31I	GGTCTC	1 cut(s)	256
BsoBI	CYCGRG	1 cut(s)	554
Bsp143I	GATC	2 cut(s)	20, 182
BspACI	CCGC	1 cut(s)	384
BspHI	TCATGA	1 cut(s)	450
BspPI	GGATC	2 cut(s)	28, 190
BspTNI	GGTCTC	1 cut(s)	256
BsrDI	GCAATG	2 cut(s)	400, 482
BsrI	ACTGG	1 cut(s)	580
BssECI	CCNNGG	1 cut(s)	510
BssMI	GATC	2 cut(s)	20, 182
Bst2UI	CCWGG	1 cut(s)	57
Bst4CI	ACNGT	2 cut(s)	247, 464
BstDSI	CCRYGG	1 cut(s)	510
BstF5I	GGATG	1 cut(s)	271
BstKTI	GATC	2 cut(s)	23, 185
BstMAI	GTCTC	4 cut(s)	6, 132, 256, 370
BstMBI	GATC	2 cut(s)	20, 182
BstMWI	GCNNNNNNNGC	1 cut(s)	411
BstNI	CCWGG	1 cut(s)	57
BstNSI	RCATGY	1 cut(s)	494
BstSCI	CCNGG	1 cut(s)	55
BstSFI	CTRYAG	2 cut(s)	133, 432
BstV1I	GCAGC	2 cut(s)	203, 206
BstX2I	RGATCY	1 cut(s)	182
BstYI	RGATCY	1 cut(s)	182
BtgI	CCRYGG	1 cut(s)	510
BtsCI	GGATG	1 cut(s)	271
CciI	TCATGA	1 cut(s)	450
Csp6I	GTAC	2 cut(s)	129, 337
CviAII	CATG	2 cut(s)	451, 491
CviJI	RGCY	5 cut(s)	101, 197, 269, 371, 476
CviKI_1	RGCY	5 cut(s)	101, 197, 269, 371, 476
CviQI	GTAC	2 cut(s)	129, 337
DpnI	GATC	2 cut(s)	22, 184
DpnII	GATC	2 cut(s)	20, 182
DraIII	CACNNNGTG	1 cut(s)	425
DrdI	GACNNNNNNGTC	1 cut(s)	146
DseDI	GACNNNNNNGTC	1 cut(s)	146
Eco31I	GGTCTC	1 cut(s)	256
Eco88I	CYCGRG	1 cut(s)	554
EcoRII	CCWGG	1 cut(s)	55
Esp3I	CGTCTC	1 cut(s)	132
FaeI	CATG	2 cut(s)	454, 494
FaiI	YATR	8 cut(s)	72, 135, 237, 434, 452, 467, 492, 566
FaqI	GGGAC	1 cut(s)	134
FatI	CATG	2 cut(s)	450, 490
Fnu4HI	GCNGC	2 cut(s)	192, 195
FokI	GGATG	1 cut(s)	258
Fsp4HI	GCNGC	2 cut(s)	192, 195
FspBI	CTAG	4 cut(s)	9, 198, 252, 329
GluI	GCNGC	2 cut(s)	192, 195
Hin1II	CATG	2 cut(s)	454, 494
HinfI	GANTC	2 cut(s)	88, 303
HphI	GGTGA	2 cut(s)	15, 94
Hpy166II	GTNNAC	1 cut(s)	289
Hpy188I	TCNGA	2 cut(s)	93, 539
Hpy188III	TCNNGA	5 cut(s)	9, 275, 329, 451, 556
Hpy8I	GTNNAC	1 cut(s)	289
HpyAV	CCTTC	2 cut(s)	36, 162
HpyCH4III	ACNGT	2 cut(s)	247, 464
HpyCH4V	TGCA	3 cut(s)	191, 487, 568
HpyF10VI	GCNNNNNNNGC	1 cut(s)	411
Hsp92II	CATG	2 cut(s)	454, 494
Kzo9I	GATC	2 cut(s)	20, 182
LpnPI	CCDG	7 cut(s)	42, 69, 152, 279, 288, 513, 593
Lsp1109I	GCAGC	2 cut(s)	203, 206
MaeI	CTAG	4 cut(s)	9, 198, 252, 329
MaeIII	GTNAC	4 cut(s)	51, 229, 427, 575
MalI	GATC	2 cut(s)	22, 184
MboI	GATC	2 cut(s)	20, 182
MboII	GAAGA	8 cut(s)	21, 24, 27, 36, 39, 97, 329, 466
MflI	RGATCY	1 cut(s)	182
MluCI	AATT	1 cut(s)	542
MlyI	GAGTC	1 cut(s)	312
MnlI	CCTC	3 cut(s)	11, 458, 563
MseI	TTAA	2 cut(s)	117, 495
MslI	CAYNNNNRTG	1 cut(s)	276
MspR9I	CCNGG	1 cut(s)	57
MvaI	CCWGG	1 cut(s)	57
MwoI	GCNNNNNNNGC	1 cut(s)	411
NdeII	GATC	2 cut(s)	20, 182
NlaIII	CATG	2 cut(s)	454, 494
NmuCI	GTSAC	2 cut(s)	427, 575
NspI	RCATGY	1 cut(s)	494
PaeR7I	CTCGAG	1 cut(s)	554
PagI	TCATGA	1 cut(s)	450
PciI	ACATGT	1 cut(s)	490
PfeI	GAWTC	1 cut(s)	88
PflFI	GACNNNGTC	1 cut(s)	146
PkrI	GCNGC	2 cut(s)	193, 196
PleI	GAGTC	1 cut(s)	311
PpsI	GAGTC	1 cut(s)	311
PscI	ACATGT	1 cut(s)	490
Psp6I	CCWGG	1 cut(s)	55
PspGI	CCWGG	1 cut(s)	55
PsuI	RGATCY	1 cut(s)	182
PsyI	GACNNNGTC	1 cut(s)	146
RsaI	GTAC	2 cut(s)	130, 338
RsaNI	GTAC	2 cut(s)	129, 337
RseI	CAYNNNNRTG	1 cut(s)	276
SaqAI	TTAA	2 cut(s)	117, 495
SatI	GCNGC	2 cut(s)	192, 195
Sau3AI	GATC	2 cut(s)	20, 182
SchI	GAGTC	1 cut(s)	312
ScrFI	CCNGG	1 cut(s)	57
SfcI	CTRYAG	2 cut(s)	133, 432
Sfr274I	CTCGAG	1 cut(s)	554
SlaI	CTCGAG	1 cut(s)	554
SmiMI	CAYNNNNRTG	1 cut(s)	276
SmlI	CTYRAG	2 cut(s)	477, 554
SmoI	CTYRAG	2 cut(s)	477, 554
Sse9I	AATT	1 cut(s)	542
SsiI	CCGC	1 cut(s)	384
SspMI	CTAG	4 cut(s)	9, 198, 252, 329
StyD4I	CCNGG	1 cut(s)	55
TaaI	ACNGT	2 cut(s)	247, 464
TaqI	TCGA	3 cut(s)	301, 342, 555
TasI	AATT	1 cut(s)	542
TatI	WGTACW	1 cut(s)	336
TfiI	GAWTC	1 cut(s)	88
Tru1I	TTAA	2 cut(s)	117, 495
Tru9I	TTAA	2 cut(s)	117, 495
TseFI	GTSAC	2 cut(s)	427, 575
TseI	GCWGC	2 cut(s)	191, 194
Tsp45I	GTSAC	2 cut(s)	427, 575
TspDTI	ATGAA	6 cut(s)	90, 349, 381, 389, 467, 523
TspGWI	ACGGA	1 cut(s)	436
Tth111I	GACNNNGTC	1 cut(s)	146
XbaI	TCTAGA	2 cut(s)	8, 328
XceI	RCATGY	1 cut(s)	494
XhoI	CTCGAG	1 cut(s)	554
XspI	CTAG	4 cut(s)	9, 198, 252, 329

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.