Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0000627

Physical Location & Seq

Genomic Coordinates Forward (+)

9216482 .. 9224593

Gene Structure 8112 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG061500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGGTGCATCTGAAGGGAATTGATTCACTTATGAACCAAGCTGCAGTAGCATTGCAATCTAAGAATGATAGACTGTGTAGAGAGGACAATATTCCATGCCAAATTGAAGAGGGTCTCTTCTTGGGTTCTCTTGGAGCTGCAAATAACAAGGAGGAGCTGAAGAACTTAAATGTCACGCACATTTTGACCGTGGCCGATTCTTTGCCACCTAAATATCCAAACGATTTCGTGTACAAGGTTTTGAATGTCGAAGACAGAAGAACCACAGACCTGCAACAACACTTTGATGAGTGTTTCAATTATATCGAAGAAGCTAAAACATCTGGGGGTGGTGTGTTGGTTCATTGCTTTTCTGGAAGATCGAGAAGTGCGACTATTGTATTATCTTATCTGATGAAGAAGCATCGTAGTATGAGTCTATCTCAAGCTCTTGAACATGTGAAGAGAAAAAGACCAGAGGCAGCTCCTAATGCTGGTTTTATTTCACAACTGCAGAACCTTGAAAAAGTAGTGTTGGGCATATCCGCGATTAAACTGCCAAAACCGGTCATTCTCAATAAAAAAATTAAAAAAAAAAAAAAAAACGGCCAAAACCGACGACAAACCCATAGACCACGGCACCACGCTTGGGCGGATCAGGTTTCTGTAACTAGTTCCGAGTTGCAAGTCATGGAAGCGAAAAAGACCAAGGTTCCCCAAAAGCTGGAACTATTGAAGATGACAAATGAAACCAGACTCCAGGTCTTGCATTTGAATGTCCTTGAAATTTTGAAGACAGATTCAAATTTCACTGCATTTCTGGATTCTGATCCAGATAAAGGCCCAGTAAATCTCTGTTGGAAGTCGTCCCACCAATCCAGTGGCTCGGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0005488 GO:0005515 GO:0005516 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008138 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0036211 GO:0042578 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04360 ko04810 map04360 map04810

Pfam Domains

Protein Families

DSPc

Protein Analysis

290

Amino Acids

32.58

Weight (kDa)

9.51

Isoelectric Point (pI)

54.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DSPc	PF00782	39 - 169	2e-29	Dual specificity phosphatase, catalytic domain
Tc-R-P	PF22785	48 - 133	3.6e-06	Polymorphic toxin system, DSP-PTPase phosphatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000627)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06110 AT3G06110 AT3G06110 AT3G23610 AT3G23610 AT3G23610 AT3G23610 AT3G23610 AT3G23610
fragaria_vesca	FvH4_4g14540 FvH4_4g14540 FvH4_4g14540 FvH4_4g14540 FvH4_4g14540 FvH4_4g14540 FvH4_4g14580 FvH4_4g14580 FvH4_4g14700
malus_domestica	MD16G1184700.v1.1
prunus_persica	Prupe.1G151900_v2.0.a1 Prupe.1G151900_v2.0.a1 Prupe.1G151900_v2.0.a1 Prupe.1G151900_v2.0.a1 Prupe.1G151900_v2.0.a1 Prupe.1G151900_v2.0.a1
pyrus_communis	pycom13g15890 pycom16g15510
rosa_chinensis	RchiOBHm_Chr4g0396121 RchiOBHm_Chr4g0418191 RchiOBHm_Chr4g0418241 RchiOBHm_Chr4g0418281 RchiOBHm_Chr7g0218781
rosa_laevigata	RLG00000007880 RLG00000007884 RLG00000009570
rosa_multiflora	Rmu_co8157318.1_g000001 Rmu_sc0000032.1_g000004 Rmu_sc0000032.1_g000006 Rmu_sc0000408.1_g000002 Rmu_sc0006325.1_g000026 Rmu_sc0009634.1_g000005
rosa_roxburghii	Rroxscaffold_5G00340920 Rroxscaffold_5G00361410 Rroxscaffold_5G00361430 Rroxscaffold_5G00361460
rosa_rugosa	Rorug01G0235100 Rorug03G0352200.1 Rorug04G0150700 Rorug04G0151000 Rorug04G0151300 Rorug04G0151700 Rorug04G0151800 Rorug07G0049500
rosa_samantha	Rh2BG097600 Rh2CG099500 Rh2DG096900 Rh4AG213100 Rh4AG213300 Rh4BG064600 Rh4BG217300 Rh4BG217600 Rh4BG217700 Rh4CG071200 Rh4CG224400 Rh4CG224700 Rh4CG225000 Rh4DG061500 Rh4DG211300 Rh4DG211500 Rh4DG211900 Rh5AG356200 Rh6DG255000 Rh7AG321200 Rh7CG337700 Rh7DG282300
rosa_wichuraiana	Rw4G018090 Rw4G018120 Rw6G006740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	279
AccB1I	GGYRCC	1 cut(s)	618
AccB7I	CCANNNNNTGG	1 cut(s)	703
AccII	CGCG	1 cut(s)	527
AciI	CCGC	2 cut(s)	525, 632
AclWI	GGATC	2 cut(s)	642, 803
AcoI	YGGCCR	2 cut(s)	192, 586
AcsI	RAATTY	2 cut(s)	765, 784
AcuI	CTGAAG	2 cut(s)	32, 179
AfaI	GTAC	1 cut(s)	233
AfiI	CCNNNNNNNGG	4 cut(s)	473, 628, 703, 818
AflIII	ACRYGT	1 cut(s)	436
AgeI	ACCGGT	1 cut(s)	544
AhdI	GACNNNNNGTC	1 cut(s)	740
AhlI	ACTAGT	1 cut(s)	650
AjnI	CCWGG	1 cut(s)	738
AluBI	AGCT	7 cut(s)	41, 137, 157, 314, 428, 464, 703
AluI	AGCT	7 cut(s)	41, 137, 157, 314, 428, 464, 703
Alw26I	GTCTC	1 cut(s)	119
AlwI	GGATC	2 cut(s)	642, 803
Ama87I	CYCGRG	1 cut(s)	865
AoxI	GGCC	3 cut(s)	192, 586, 820
ApeKI	GCWGC	3 cut(s)	41, 137, 461
ApoI	RAATTY	2 cut(s)	765, 784
AsiGI	ACCGGT	1 cut(s)	544
Asp700I	GAANNNNTTC	1 cut(s)	22
AspS9I	GGNCC	1 cut(s)	821
AvaI	CYCGRG	1 cut(s)	865
BanI	GGYRCC	1 cut(s)	618
BbsI	GAAGAC	2 cut(s)	258, 779
BbvI	GCAGC	3 cut(s)	28, 124, 473
BceAI	ACGGC	2 cut(s)	601, 632
BcgI	CGANNNNNNTGC	2 cut(s)	517, 551
BciT130I	CCWGG	1 cut(s)	740
BcoDI	GTCTC	1 cut(s)	119
BcuI	ACTAGT	1 cut(s)	650
BfaI	CTAG	1 cut(s)	651
BfmI	CTRYAG	2 cut(s)	42, 491
BfuAI	ACCTGC	1 cut(s)	279
BisI	GCNGC	3 cut(s)	42, 138, 462
BlsI	GCNGC	3 cut(s)	43, 139, 463
Bme1390I	CCNGG	1 cut(s)	740
BmeRI	GACNNNNNGTC	1 cut(s)	740
BmeT110I	CYCGRG	1 cut(s)	865
BmgT120I	GGNCC	1 cut(s)	821
BmiI	GGNNCC	2 cut(s)	620, 693
BmrFI	CCNGG	1 cut(s)	740
BmrI	ACTGGG	1 cut(s)	818
BmsI	GCATC	2 cut(s)	16, 412
BmuI	ACTGGG	1 cut(s)	818
BpiI	GAAGAC	2 cut(s)	258, 779
BplI	GAGNNNNNCTC	2 cut(s)	406, 438
BpmI	CTGGAG	1 cut(s)	722
BpuEI	CTTGAG	1 cut(s)	408
BsaBI	GATNNNNATC	1 cut(s)	807
BsaI	GGTCTC	1 cut(s)	119
BsaJI	CCNNGG	3 cut(s)	189, 614, 687
BsaWI	WCCGGW	1 cut(s)	544
Bsc4I	CCNNNNNNNGG	4 cut(s)	473, 628, 703, 818
Bse118I	RCCGGY	1 cut(s)	544
Bse1I	ACTGG	2 cut(s)	824, 858
Bse3DI	GCAATG	2 cut(s)	50, 343
Bse8I	GATNNNNATC	1 cut(s)	807
BseBI	CCWGG	1 cut(s)	740
BseDI	CCNNGG	3 cut(s)	189, 614, 687
BseJI	GATNNNNATC	1 cut(s)	807
BseLI	CCNNNNNNNGG	4 cut(s)	473, 628, 703, 818
BseMI	GCAATG	2 cut(s)	50, 343
BseNI	ACTGG	2 cut(s)	824, 858
BseRI	GAGGAG	1 cut(s)	167
BseXI	GCAGC	3 cut(s)	28, 124, 473
Bsh1236I	CGCG	1 cut(s)	527
BshFI	GGCC	3 cut(s)	194, 588, 822
BshNI	GGYRCC	1 cut(s)	618
BshTI	ACCGGT	1 cut(s)	544
BsiHKCI	CYCGRG	1 cut(s)	865
BsiSI	CCGG	1 cut(s)	545
BslFI	GGGAC	1 cut(s)	832
BslI	CCNNNNNNNGG	4 cut(s)	473, 628, 703, 818
BsmAI	GTCTC	1 cut(s)	119
BsmFI	GGGAC	1 cut(s)	832
BsnI	GGCC	3 cut(s)	194, 588, 822
Bso31I	GGTCTC	1 cut(s)	119
BsoBI	CYCGRG	1 cut(s)	865
Bsp1407I	TGTACA	1 cut(s)	231
Bsp143I	GATC	3 cut(s)	359, 634, 808
BspACI	CCGC	2 cut(s)	525, 632
BspANI	GGCC	3 cut(s)	194, 588, 822
BspFNI	CGCG	1 cut(s)	527
BspLI	GGNNCC	2 cut(s)	620, 693
BspMAI	CTGCAG	2 cut(s)	46, 495
BspMI	ACCTGC	1 cut(s)	279
BspPI	GGATC	2 cut(s)	642, 803
BspT107I	GGYRCC	1 cut(s)	618
BspTNI	GGTCTC	1 cut(s)	119
BsrDI	GCAATG	2 cut(s)	50, 343
BsrFI	RCCGGY	1 cut(s)	544
BsrGI	TGTACA	1 cut(s)	231
BsrI	ACTGG	2 cut(s)	824, 858
BssAI	RCCGGY	1 cut(s)	544
BssECI	CCNNGG	3 cut(s)	189, 614, 687
BssMI	GATC	3 cut(s)	359, 634, 808
BssT1I	CCWWGG	1 cut(s)	687
Bst2UI	CCWGG	1 cut(s)	740
Bst4CI	ACNGT	2 cut(s)	75, 190
Bst6I	CTCTTC	3 cut(s)	102, 122, 437
BstAUI	TGTACA	1 cut(s)	231
BstDEI	CTNAG	1 cut(s)	60
BstDSI	CCRYGG	2 cut(s)	189, 614
BstFNI	CGCG	1 cut(s)	527
BstKTI	GATC	3 cut(s)	362, 637, 811
BstMAI	GTCTC	1 cut(s)	119
BstMBI	GATC	3 cut(s)	359, 634, 808
BstMWI	GCNNNNNNNGC	2 cut(s)	47, 470
BstNI	CCWGG	1 cut(s)	740
BstNSI	RCATGY	1 cut(s)	440
BstSCI	CCNGG	1 cut(s)	738
BstSFI	CTRYAG	2 cut(s)	42, 491
BstUI	CGCG	1 cut(s)	527
BstV1I	GCAGC	3 cut(s)	28, 124, 473
BstV2I	GAAGAC	2 cut(s)	258, 779
BstXI	CCANNNNNNTGG	1 cut(s)	860
BsuRI	GGCC	3 cut(s)	194, 588, 822
BtgI	CCRYGG	2 cut(s)	189, 614
BtsI	GCAGTG	1 cut(s)	789
BtsIMutI	CAGTG	2 cut(s)	789, 865
BveI	ACCTGC	1 cut(s)	279
Cfr10I	RCCGGY	1 cut(s)	544
Cfr13I	GGNCC	1 cut(s)	821
Csp6I	GTAC	1 cut(s)	232
CspAI	ACCGGT	1 cut(s)	544
CviAII	CATG	3 cut(s)	96, 437, 670
CviQI	GTAC	1 cut(s)	232
DdeI	CTNAG	1 cut(s)	60
DpnI	GATC	3 cut(s)	361, 636, 810
DpnII	GATC	3 cut(s)	359, 634, 808
DriI	GACNNNNNGTC	1 cut(s)	740
EaeI	YGGCCR	2 cut(s)	192, 586
Eam1104I	CTCTTC	3 cut(s)	102, 122, 437
Eam1105I	GACNNNNNGTC	1 cut(s)	740
EarI	CTCTTC	3 cut(s)	102, 122, 437
EciI	GGCGGA	1 cut(s)	647
Eco130I	CCWWGG	1 cut(s)	687
Eco31I	GGTCTC	1 cut(s)	119
Eco57I	CTGAAG	2 cut(s)	32, 179
Eco88I	CYCGRG	1 cut(s)	865
EcoRII	CCWGG	1 cut(s)	738
EcoT14I	CCWWGG	1 cut(s)	687
ErhI	CCWWGG	1 cut(s)	687
FaeI	CATG	3 cut(s)	99, 440, 673
FaiI	YATR	8 cut(s)	32, 97, 303, 413, 438, 521, 609, 671
FaqI	GGGAC	1 cut(s)	832
FatI	CATG	3 cut(s)	95, 436, 669
Fnu4HI	GCNGC	3 cut(s)	42, 138, 462
Fsp4HI	GCNGC	3 cut(s)	42, 138, 462
FspBI	CTAG	1 cut(s)	651
GluI	GCNGC	3 cut(s)	42, 138, 462
GsuI	CTGGAG	1 cut(s)	722
HaeIII	GGCC	3 cut(s)	194, 588, 822
HapII	CCGG	1 cut(s)	545
Hin1II	CATG	3 cut(s)	99, 440, 673
HinfI	GANTC	6 cut(s)	23, 197, 415, 735, 779, 803
HpaII	CCGG	1 cut(s)	545
Hpy166II	GTNNAC	1 cut(s)	232
Hpy188I	TCNGA	4 cut(s)	12, 393, 658, 808
Hpy188III	TCNNGA	5 cut(s)	354, 363, 431, 800, 812
Hpy8I	GTNNAC	1 cut(s)	232
Hpy99I	CGWCG	1 cut(s)	600
HpyAV	CCTTC	1 cut(s)	7
HpyCH4III	ACNGT	2 cut(s)	75, 190
HpyCH4V	TGCA	9 cut(s)	7, 44, 55, 140, 274, 493, 664, 748, 794
HpyF10VI	GCNNNNNNNGC	2 cut(s)	47, 470
HpyF3I	CTNAG	1 cut(s)	60
Hsp92II	CATG	3 cut(s)	99, 440, 673
Kzo9I	GATC	3 cut(s)	359, 634, 808
LmnI	GCTCC	3 cut(s)	134, 154, 469
Lsp1109I	GCAGC	3 cut(s)	28, 124, 473
LweI	GCATC	2 cut(s)	16, 412
MaeI	CTAG	1 cut(s)	651
MaeIII	GTNAC	2 cut(s)	172, 646
MalI	GATC	3 cut(s)	361, 636, 810
MboI	GATC	3 cut(s)	359, 634, 808
MluCI	AATT	6 cut(s)	18, 102, 298, 564, 765, 784
MlyI	GAGTC	2 cut(s)	424, 729
MmeI	TCCRAC	1 cut(s)	818
MnlI	CCTC	4 cut(s)	76, 103, 145, 451
MroXI	GAANNNNTTC	1 cut(s)	22
MseI	TTAA	3 cut(s)	167, 531, 567
MslI	CAYNNNNRTG	2 cut(s)	285, 753
MspI	CCGG	1 cut(s)	545
MspR9I	CCNGG	1 cut(s)	740
MvaI	CCWGG	1 cut(s)	740
MvnI	CGCG	1 cut(s)	527
MwoI	GCNNNNNNNGC	2 cut(s)	47, 470
NdeII	GATC	3 cut(s)	359, 634, 808
NlaIII	CATG	3 cut(s)	99, 440, 673
NlaIV	GGNNCC	2 cut(s)	620, 693
NmuCI	GTSAC	1 cut(s)	172
NspI	RCATGY	1 cut(s)	440
PciI	ACATGT	1 cut(s)	436
PcsI	WCGNNNNNNNCGW	1 cut(s)	368
PdmI	GAANNNNTTC	1 cut(s)	22
PfeI	GAWTC	4 cut(s)	23, 197, 779, 803
PflMI	CCANNNNNTGG	1 cut(s)	703
PinAI	ACCGGT	1 cut(s)	544
PkrI	GCNGC	3 cut(s)	43, 139, 463
PleI	GAGTC	2 cut(s)	423, 729
PpsI	GAGTC	2 cut(s)	423, 729
PscI	ACATGT	1 cut(s)	436
Psp6I	CCWGG	1 cut(s)	738
PspGI	CCWGG	1 cut(s)	738
PspN4I	GGNNCC	2 cut(s)	620, 693
PspPI	GGNCC	1 cut(s)	821
PstI	CTGCAG	2 cut(s)	46, 495
RsaI	GTAC	1 cut(s)	233
RsaNI	GTAC	1 cut(s)	232
RseI	CAYNNNNRTG	2 cut(s)	285, 753
SaqAI	TTAA	3 cut(s)	167, 531, 567
SatI	GCNGC	3 cut(s)	42, 138, 462
Sau3AI	GATC	3 cut(s)	359, 634, 808
Sau96I	GGNCC	1 cut(s)	821
SchI	GAGTC	2 cut(s)	424, 729
ScrFI	CCNGG	1 cut(s)	740
SfaNI	GCATC	2 cut(s)	16, 412
SfcI	CTRYAG	2 cut(s)	42, 491
SmiMI	CAYNNNNRTG	2 cut(s)	285, 753
SmlI	CTYRAG	1 cut(s)	423
SmoI	CTYRAG	1 cut(s)	423
SpeI	ACTAGT	1 cut(s)	650
Sse9I	AATT	6 cut(s)	18, 102, 298, 564, 765, 784
SsiI	CCGC	2 cut(s)	525, 632
SspI	AATATT	1 cut(s)	91
SspMI	CTAG	1 cut(s)	651
StyD4I	CCNGG	1 cut(s)	738
StyI	CCWWGG	1 cut(s)	687
TaaI	ACNGT	2 cut(s)	75, 190
TaqI	TCGA	3 cut(s)	249, 306, 362
TasI	AATT	6 cut(s)	18, 102, 298, 564, 765, 784
TatI	WGTACW	1 cut(s)	231
TfiI	GAWTC	4 cut(s)	23, 197, 779, 803
Tru1I	TTAA	3 cut(s)	167, 531, 567
Tru9I	TTAA	3 cut(s)	167, 531, 567
TscAI	CASTG	2 cut(s)	796, 865
TseFI	GTSAC	1 cut(s)	172
TseI	GCWGC	3 cut(s)	41, 137, 461
Tsp45I	GTSAC	1 cut(s)	172
TspDTI	ATGAA	4 cut(s)	47, 332, 410, 741
TspRI	CASTG	2 cut(s)	796, 865
Van91I	CCANNNNNTGG	1 cut(s)	703
XapI	RAATTY	2 cut(s)	765, 784
XceI	RCATGY	1 cut(s)	440
XcmI	CCANNNNNNNNNTGG	1 cut(s)	857
XmnI	GAANNNNTTC	1 cut(s)	22
XspI	CTAG	1 cut(s)	651

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.