AT3G11320

organic anion transmembrane transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0000810
Physical Location & Seq
Reverse (-)
3546276 .. 3548877
2602 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G11320.1

Sequence Viewer

Length: 927 bp
ATGAAGATAGCGGCCAATGGCCGGTTTTTCACAATCGGACTCGTAGCGTCATGGTATTCATCGAACATCGGAGTTTTATTGCTGAACAAGTACTTGTTAAGCAACTATGGATTCAAGTATCCGATCTTCCTCACCATGTGTCACATGACGGCTTGTTCTCTTCTCAGCTACGTTGCTATTGCTTGGATGAAGATGGTTCCGATGCAAACGATCCGATCTCGAGTTCAGTTTCTTAAGATCGCTGCGTTAAGTCTCGTTTTCTGTGTGTCGGTGGTTTTTGGGAATATCTCTCTTCGGTTTCTTCCTGTATCGTTTAATCAAGCGATTGGTGCTACGACGCCGTTTTTCACCGCCGTGTTTGCTTATCTGATTACTTTTAAGAGAGAAGCTTGGTTGACTTACTTCACTCTCGTCCCTGTTGTTACCGGTGTTGTCATTGCCAGTGGGAGTGAGCCAAGTTTCCACCTGTTTGGATTCATTATGTGCATTGCAGCTACAGCTGCAAGAGCACTTAAATCAGTTCTTCAAGGAATTTTGCTTTCTTCAGAAGGGGAGAAGCTAAATTCCATGAACCTCCTCCTTTACATGGCTCCCATAGCTGTTGTGTTCCTCCTTCCTGCTACACTTATCATGGAAAAAAATGTTGTTGGCATTACAATTGCACTTGCCAGAGACGATTTTAGAATCGTTTGGTATCTGCTATTCAATTCGGCGCTAGCTTATTTTGTGAACTTGACCAATTTCTTAGTCACGAAACACACCAGCGCTCTGACTCTCCAGGTGCTAGGAAACGCCAAAGGTGCAGTAGCAGTGGTGGTATCAATCCTGATATTCAGGAATCCTGTCTCAGTGACTGGAATGTTAGGTTACTCGCTCACTGTCTGTGGAGTTATCCTCTACAGCGAAGCCAAGAAACGAAGCAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPT

Protein Analysis

308

Amino Acids

33.84

Weight (kDa)

9.84

Isoelectric Point (pI)

31.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPT PF03151 14 - 301 8.5e-46 Triose-phosphate Transporter family
UAA PF08449 29 - 303 2.2e-14 UAA transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 11, 351
AclWI GGATC 1 cut(s) 205
AcoI YGGCCR 2 cut(s) 12, 19
AcsI RAATTY 2 cut(s) 531, 562
AcuI CTGAAG 1 cut(s) 528
AcyI GRCGYC 1 cut(s) 338
AdeI CACNNNGTG 1 cut(s) 138
AfaI GTAC 1 cut(s) 92
AfeI AGCGCT 1 cut(s) 766
AfiI CCNNNNNNNGG 2 cut(s) 21, 586
AflII CTTAAG 1 cut(s) 233
AgeI ACCGGT 1 cut(s) 425
AgsI TTSAA 3 cut(s) 115, 527, 706
AjnI CCWGG 1 cut(s) 777
AleI CACNNNNGTG 1 cut(s) 353
AluBI AGCT 7 cut(s) 168, 389, 494, 500, 559, 599, 719
AluI AGCT 7 cut(s) 168, 389, 494, 500, 559, 599, 719
Alw21I GWGCWC 1 cut(s) 511
Alw26I GTCTC 3 cut(s) 257, 666, 850
AlwI GGATC 1 cut(s) 205
AlwNI CAGNNNCTG 1 cut(s) 854
Ama87I CYCGRG 1 cut(s) 219
Aor51HI AGCGCT 1 cut(s) 766
AoxI GGCC 2 cut(s) 12, 19
ApeKI GCWGC 3 cut(s) 242, 491, 500
ApoI RAATTY 2 cut(s) 531, 562
AsiGI ACCGGT 1 cut(s) 425
AspLEI GCGC 2 cut(s) 715, 767
AsuHPI GGTGA 2 cut(s) 124, 340
AsuNHI GCTAGC 1 cut(s) 715
AvaI CYCGRG 1 cut(s) 219
BarI GAAGNNNNNNTAC 2 cut(s) 110, 142
Bbv12I GWGCWC 1 cut(s) 511
BbvI GCAGC 3 cut(s) 229, 487, 503
BccI CCATC 1 cut(s) 187
BceAI ACGGC 3 cut(s) 165, 325, 338
BciT130I CCWGG 1 cut(s) 779
BciVI GTATCC 1 cut(s) 129
BcoDI GTCTC 3 cut(s) 257, 666, 850
BfaI CTAG 2 cut(s) 716, 785
BfmI CTRYAG 2 cut(s) 495, 898
BfoI RGCGCY 2 cut(s) 716, 768
BfrI CTTAAG 1 cut(s) 233
BfuI GTATCC 1 cut(s) 129
BisI GCNGC 4 cut(s) 12, 243, 492, 501
BlsI GCNGC 4 cut(s) 13, 244, 493, 502
BmcAI AGTACT 1 cut(s) 92
Bme1390I CCNGG 1 cut(s) 779
BmeT110I CYCGRG 1 cut(s) 219
BmiI GGNNCC 2 cut(s) 198, 591
BmrFI CCNGG 1 cut(s) 779
BmsI GCATC 1 cut(s) 192
BmtI GCTAGC 1 cut(s) 719
BplI GAGNNNNNCTC 2 cut(s) 879, 911
BpmI CTGGAG 1 cut(s) 761
BsaHI GRCGYC 1 cut(s) 338
BsaWI WCCGGW 1 cut(s) 425
Bsc4I CCNNNNNNNGG 2 cut(s) 21, 586
Bse118I RCCGGY 2 cut(s) 21, 425
Bse1I ACTGG 2 cut(s) 441, 859
Bse3DI GCAATG 2 cut(s) 435, 486
BseBI CCWGG 1 cut(s) 779
BseGI GGATG 1 cut(s) 192
BseLI CCNNNNNNNGG 2 cut(s) 21, 586
BseMI GCAATG 2 cut(s) 435, 486
BseMII CTCAG 2 cut(s) 178, 861
BseNI ACTGG 2 cut(s) 441, 859
BseRI GAGGAG 1 cut(s) 566
BseXI GCAGC 3 cut(s) 229, 487, 503
BsgI GTGCAG 1 cut(s) 822
BshFI GGCC 2 cut(s) 14, 21
BshTI ACCGGT 1 cut(s) 425
BsiHKAI GWGCWC 1 cut(s) 511
BsiHKCI CYCGRG 1 cut(s) 219
BsiSI CCGG 2 cut(s) 22, 426
BslFI GGGAC 1 cut(s) 398
BslI CCNNNNNNNGG 2 cut(s) 21, 586
BsmAI GTCTC 3 cut(s) 257, 666, 850
BsmBI CGTCTC 1 cut(s) 666
BsmFI GGGAC 1 cut(s) 398
BsnI GGCC 2 cut(s) 14, 21
BsoBI CYCGRG 1 cut(s) 219
Bsp1286I GDGCHC 1 cut(s) 511
Bsp143I GATC 4 cut(s) 123, 210, 215, 237
BspACI CCGC 2 cut(s) 11, 351
BspANI GGCC 2 cut(s) 14, 21
BspCNI CTCAG 2 cut(s) 177, 860
BspLI GGNNCC 2 cut(s) 198, 591
BspOI GCTAGC 1 cut(s) 719
BspPI GGATC 1 cut(s) 205
BspTI CTTAAG 1 cut(s) 233
BsrDI GCAATG 2 cut(s) 435, 486
BsrFI RCCGGY 2 cut(s) 21, 425
BsrI ACTGG 2 cut(s) 441, 859
BssAI RCCGGY 2 cut(s) 21, 425
BssMI GATC 4 cut(s) 123, 210, 215, 237
BssNI GRCGYC 1 cut(s) 338
Bst2UI CCWGG 1 cut(s) 779
Bst4CI ACNGT 1 cut(s) 880
Bst6I CTCTTC 2 cut(s) 165, 297
BstACI GRCGYC 1 cut(s) 338
BstAFI CTTAAG 1 cut(s) 233
BstC8I GCNNGC 1 cut(s) 717
BstDEI CTNAG 3 cut(s) 164, 745, 847
BstF5I GGATG 1 cut(s) 192
BstH2I RGCGCY 2 cut(s) 716, 768
BstHHI GCGC 2 cut(s) 715, 767
BstKTI GATC 4 cut(s) 126, 213, 218, 240
BstMAI GTCTC 3 cut(s) 257, 666, 850
BstMBI GATC 4 cut(s) 123, 210, 215, 237
BstMWI GCNNNNNNNGC 7 cut(s) 329, 359, 497, 500, 506, 596, 800
BstNI CCWGG 1 cut(s) 779
BstSCI CCNGG 1 cut(s) 777
BstSFI CTRYAG 2 cut(s) 495, 898
BstV1I GCAGC 3 cut(s) 229, 487, 503
BstXI CCANNNNNNTGG 1 cut(s) 470
BsuI GTATCC 1 cut(s) 129
BsuRI GGCC 2 cut(s) 14, 21
BtsCI GGATG 1 cut(s) 192
BtsI GCAGTG 1 cut(s) 816
BtsIMutI CAGTG 4 cut(s) 448, 816, 855, 876
Cac8I GCNNGC 1 cut(s) 717
CaiI CAGNNNCTG 1 cut(s) 854
CfoI GCGC 2 cut(s) 715, 767
Cfr10I RCCGGY 2 cut(s) 21, 425
CseI GACGC 2 cut(s) 36, 346
Csp6I GTAC 1 cut(s) 91
CspAI ACCGGT 1 cut(s) 425
CviAII CATG 6 cut(s) 51, 136, 145, 568, 586, 631
CviQI GTAC 1 cut(s) 91
DdeI CTNAG 3 cut(s) 164, 745, 847
DpnI GATC 4 cut(s) 125, 212, 217, 239
DpnII GATC 4 cut(s) 123, 210, 215, 237
DraIII CACNNNGTG 1 cut(s) 138
EaeI YGGCCR 2 cut(s) 12, 19
Eam1104I CTCTTC 2 cut(s) 165, 297
EarI CTCTTC 2 cut(s) 165, 297
Eco47III AGCGCT 1 cut(s) 766
Eco57I CTGAAG 1 cut(s) 528
Eco88I CYCGRG 1 cut(s) 219
EcoRII CCWGG 1 cut(s) 777
Esp3I CGTCTC 1 cut(s) 666
FaeI CATG 6 cut(s) 54, 139, 148, 571, 589, 634
FaiI YATR 9 cut(s) 52, 108, 137, 146, 482, 569, 587, 596, 632
FaqI GGGAC 1 cut(s) 398
FatI CATG 6 cut(s) 50, 135, 144, 567, 585, 630
Fnu4HI GCNGC 4 cut(s) 12, 243, 492, 501
FokI GGATG 1 cut(s) 199
Fsp4HI GCNGC 4 cut(s) 12, 243, 492, 501
FspBI CTAG 2 cut(s) 716, 785
GlaI GCGC 2 cut(s) 714, 766
GluI GCNGC 4 cut(s) 12, 243, 492, 501
GsuI CTGGAG 1 cut(s) 761
HaeII RGCGCY 2 cut(s) 716, 768
HaeIII GGCC 2 cut(s) 14, 21
HapII CCGG 2 cut(s) 22, 426
HgaI GACGC 2 cut(s) 36, 346
HhaI GCGC 2 cut(s) 715, 767
Hin1I GRCGYC 1 cut(s) 338
Hin1II CATG 6 cut(s) 54, 139, 148, 571, 589, 634
Hin6I GCGC 2 cut(s) 713, 765
HinP1I GCGC 2 cut(s) 713, 765
HincII GTYRAC 1 cut(s) 396
HindII GTYRAC 1 cut(s) 396
HindIII AAGCTT 1 cut(s) 387
HinfI GANTC 6 cut(s) 39, 111, 474, 684, 772, 838
HpaII CCGG 2 cut(s) 22, 426
HphI GGTGA 2 cut(s) 124, 340
Hpy166II GTNNAC 2 cut(s) 396, 730
Hpy188I TCNGA 8 cut(s) 38, 71, 123, 201, 215, 369, 547, 771
Hpy188III TCNNGA 4 cut(s) 219, 751, 826, 835
Hpy8I GTNNAC 2 cut(s) 396, 730
Hpy99I CGWCG 1 cut(s) 340
HpyAV CCTTC 2 cut(s) 542, 623
HpyCH4III ACNGT 1 cut(s) 880
HpyCH4IV ACGT 1 cut(s) 171
HpyCH4V TGCA 6 cut(s) 205, 486, 491, 503, 662, 803
HpyF10VI GCNNNNNNNGC 7 cut(s) 329, 359, 497, 500, 506, 596, 800
HpyF3I CTNAG 3 cut(s) 164, 745, 847
HpySE526I ACGT 1 cut(s) 171
Hsp92I GRCGYC 1 cut(s) 338
Hsp92II CATG 6 cut(s) 54, 139, 148, 571, 589, 634
HspAI GCGC 2 cut(s) 713, 765
Kzo9I GATC 4 cut(s) 123, 210, 215, 237
LmnI GCTCC 1 cut(s) 595
Lsp1109I GCAGC 3 cut(s) 229, 487, 503
LweI GCATC 1 cut(s) 192
MaeI CTAG 2 cut(s) 716, 785
MaeII ACGT 1 cut(s) 171
MaeIII GTNAC 5 cut(s) 140, 421, 748, 850, 866
MalI GATC 4 cut(s) 125, 212, 217, 239
MboI GATC 4 cut(s) 123, 210, 215, 237
MboII GAAGA 8 cut(s) 16, 118, 152, 202, 284, 293, 515, 534
MfeI CAATTG 1 cut(s) 657
MhlI GDGCHC 1 cut(s) 511
MluCI AATT 5 cut(s) 531, 562, 657, 706, 739
MlyI GAGTC 2 cut(s) 33, 766
MnlI CCTC 5 cut(s) 140, 584, 587, 620, 905
MseI TTAA 6 cut(s) 98, 234, 248, 315, 378, 513
MslI CAYNNNNRTG 1 cut(s) 353
MspA1I CMGCKG 1 cut(s) 500
MspCI CTTAAG 1 cut(s) 233
MspI CCGG 2 cut(s) 22, 426
MspR9I CCNGG 1 cut(s) 779
MunI CAATTG 1 cut(s) 657
MvaI CCWGG 1 cut(s) 779
MwoI GCNNNNNNNGC 7 cut(s) 329, 359, 497, 500, 506, 596, 800
NdeII GATC 4 cut(s) 123, 210, 215, 237
NheI GCTAGC 1 cut(s) 715
NlaIII CATG 6 cut(s) 54, 139, 148, 571, 589, 634
NlaIV GGNNCC 2 cut(s) 198, 591
NmuCI GTSAC 3 cut(s) 140, 748, 850
OliI CACNNNNGTG 1 cut(s) 353
PaeR7I CTCGAG 1 cut(s) 219
PfeI GAWTC 4 cut(s) 111, 474, 684, 838
PinAI ACCGGT 1 cut(s) 425
PkrI GCNGC 4 cut(s) 13, 244, 493, 502
PleI GAGTC 2 cut(s) 33, 766
PpsI GAGTC 2 cut(s) 33, 766
Psp6I CCWGG 1 cut(s) 777
PspGI CCWGG 1 cut(s) 777
PspN4I GGNNCC 2 cut(s) 198, 591
PstNI CAGNNNCTG 1 cut(s) 854
PvuII CAGCTG 1 cut(s) 500
RsaI GTAC 1 cut(s) 92
RsaNI GTAC 1 cut(s) 91
RseI CAYNNNNRTG 1 cut(s) 353
SaqAI TTAA 6 cut(s) 98, 234, 248, 315, 378, 513
SatI GCNGC 4 cut(s) 12, 243, 492, 501
Sau3AI GATC 4 cut(s) 123, 210, 215, 237
ScaI AGTACT 1 cut(s) 92
SchI GAGTC 2 cut(s) 33, 766
ScrFI CCNGG 1 cut(s) 779
SduI GDGCHC 1 cut(s) 511
SfaNI GCATC 1 cut(s) 192
SfcI CTRYAG 2 cut(s) 495, 898
Sfr274I CTCGAG 1 cut(s) 219
SlaI CTCGAG 1 cut(s) 219
SmiMI CAYNNNNRTG 1 cut(s) 353
SmlI CTYRAG 2 cut(s) 219, 233
SmoI CTYRAG 2 cut(s) 219, 233
Sse9I AATT 5 cut(s) 531, 562, 657, 706, 739
SsiI CCGC 2 cut(s) 11, 351
SspMI CTAG 2 cut(s) 716, 785
StyD4I CCNGG 1 cut(s) 777
TaaI ACNGT 1 cut(s) 880
TaiI ACGT 1 cut(s) 174
TaqI TCGA 2 cut(s) 62, 220
TasI AATT 5 cut(s) 531, 562, 657, 706, 739
TatI WGTACW 1 cut(s) 90
TauI GCSGC 1 cut(s) 14
TfiI GAWTC 4 cut(s) 111, 474, 684, 838
Tru1I TTAA 6 cut(s) 98, 234, 248, 315, 378, 513
Tru9I TTAA 6 cut(s) 98, 234, 248, 315, 378, 513
TscAI CASTG 4 cut(s) 448, 816, 855, 883
TseFI GTSAC 3 cut(s) 140, 748, 850
TseI GCWGC 3 cut(s) 242, 491, 500
Tsp45I GTSAC 3 cut(s) 140, 748, 850
TspDTI ATGAA 5 cut(s) 17, 48, 203, 466, 584
TspRI CASTG 4 cut(s) 448, 816, 855, 883
Vha464I CTTAAG 1 cut(s) 233
XapI RAATTY 2 cut(s) 531, 562
XhoI CTCGAG 1 cut(s) 219
XspI CTAG 2 cut(s) 716, 785
ZrmI AGTACT 1 cut(s) 92
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.