Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0000810

Physical Location & Seq

Genomic Coordinates Forward (+)

46660569 .. 46664262

Gene Structure 3694 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0348900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

ATGGGTGGTTTTGAAAACCCTTATACCTCTTCTGTTTCTTCAACAATGGCAGCTTTGCAAAAACGAATCATTGGTAGAAGATCAAAACCCCTAAATGCTACTGTCTCAACCCAAGAGTTCAACTCCTTTCACACCATTGACCGCAAGCTCTTCACCCGATTGGTGTTCAGTCTGGGCCGTGACCCGACCGAGTCGGCCCAAGTCATGGCTTTGTGGATGTGGCTGGAGCACAATGGCAACGAGTTTAACTTGGTCTACAAGGCACTGATGACTCTACCCAATACCCTTCTCAATGCTATGGCTGATGAGTCGGTTTCGGCCTTGAATTGCATTCAGAGCAATGTGTTTCCTTTCTCTGATTCAGGCATTACTCCTGACATTCCTATGCTGCAAGCCATGAGCAACAGTGGTGTCACACTCAGATTCTTTCATGAAAGCCGCGGCGAAATTGCGAGTGGAGTCATCACATTGCTTAAAGATGTTTGCTTGAGAGTGTTTGGGGACTTGTTGTTTCAACCCCACCTGGAGAAAAAGGGTGGTGACGGTTTGTACAATCCAGTAATGGGTGATATTGCTCAGGGCAATGTGCAGTGGGGTAATGATATTCCATTATATTGGCACCCACAAATGAATAGTGCTAATCTTTACTATTTGCGTGGAGGTTTTGATCCTCATAAGCTTGCAGTTCAGCGCCAGAATTTGAATGAGGAAATGGAGGAGGTTTTGAGCCGTTTGAATTTGAATGATCATCAAGATCAAGAAGTATTCCCTCAAGATAGGACTATTTTCCTAACATTTTCTAGAGGGTTTCCAATTGCAGAAAATAAGCTCAGAGAGTTCTTCACTAGGAGATTTGGGGAGATTATTGATGTAATCTGTATGCAAGAAGCTAAGGAACCTCTGTATGCCCGGCTTGTGCTACAATCTGCTTCCTCCATTCCGGTGGTTCTTGGTGGGAAAAGCATGGTCCAATTCTGCATTGATGGCAGGCATGTTCGGGCGAGGAAATTTGTGCTCAGGCATGCTTGCGCTGGGCAAAGGAGAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0032991 GO:0034641 GO:0034645 GO:0042254 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0071840 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L35Ae

Protein Analysis

349

Amino Acids

39.5

Weight (kDa)

7.12

Isoelectric Point (pI)

48.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000810)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11320 AT5G05820
fragaria_vesca	FvH4_3g37700 FvH4_6g12230 FvH4_6g12230 FvH4_7g23830 FvH4_7g23830 FvH4_7g23830 FvH4_7g23830 FvH4_7g23830
malus_domestica	MD01G1145600.v1.1 MD03G1078400.v1.1 MD04G1144900.v1.1 MD07G1212700.v1.1 MD12G1158900.v1.1
prunus_persica	Prupe.2G244900_v2.0.a1 Prupe.2G244900_v2.0.a1 Prupe.2G244900_v2.0.a1 Prupe.6G063400_v2.0.a1 Prupe.6G269300_v2.0.a1 Prupe.6G269300_v2.0.a1
pyrus_communis	pycom01g16510 pycom03g06280 pycom07g19540 pycom12g15080
rosa_chinensis	RchiOBHm_Chr1g0369201 RchiOBHm_Chr3g0464031 RchiOBHm_Chr5g0067971 RchiOBHm_Chr7g0183791
rosa_laevigata	RLG00000024727 RLG00000027147 RLG00000035948
rosa_multiflora	Rmu_co8032292.1_g000001 Rmu_sc0000435.1_g000038 Rmu_sc0001203.1_g000001 Rmu_sc0004616.1_g000004 Rmu_sc0005807.1_g000004 Rmu_sc0019331.1_g000001 Rmu_sc0028685.1_g000001
rosa_roxburghii	Rroxscaffold_1G00012630 Rroxscaffold_1G00013340 Rroxscaffold_4G00287870 Rroxscaffold_4G00291440 Rroxscaffold_5G00365160 Rroxscaffold_6G00416050
rosa_rugosa	Rorug01G0348800 Rorug01G0348800 Rorug01G0348800 Rorug01G0348900 Rorug03G0070200 Rorug04G0183800 Rorug05G0386900
rosa_samantha	Rh1AG355800 Rh1BG319400 Rh1CG333400 Rh1DG350100 Rh3BG131300 Rh3CG133600 Rh3DG132600 Rh5AG445800 Rh5AG536100 Rh5BG463300 Rh5CG485200 Rh5DG477300 Rh7CG459800
rosa_wichuraiana	Rw1G031400 Rw3G010730 Rw5G041630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	618
AccB7I	CCANNNNNTGG	1 cut(s)	205
AccI	GTMKAC	1 cut(s)	255
AccII	CGCG	1 cut(s)	441
AciI	CCGC	3 cut(s)	142, 439, 441
AclWI	GGATC	1 cut(s)	662
AcsI	RAATTY	3 cut(s)	697, 736, 1007
AfaI	GTAC	1 cut(s)	551
AfiI	CCNNNNNNNGG	2 cut(s)	205, 563
AgsI	TTSAA	8 cut(s)	14, 42, 121, 325, 515, 703, 736, 742
AjnI	CCWGG	1 cut(s)	522
AluBI	AGCT	5 cut(s)	53, 148, 679, 829, 890
AluI	AGCT	5 cut(s)	53, 148, 679, 829, 890
Alw21I	GWGCWC	2 cut(s)	231, 1017
Alw26I	GTCTC	2 cut(s)	109, 1038
AlwI	GGATC	1 cut(s)	662
AoxI	GGCC	3 cut(s)	175, 195, 318
ApeKI	GCWGC	2 cut(s)	50, 388
ApoI	RAATTY	3 cut(s)	697, 736, 1007
AspLEI	GCGC	2 cut(s)	693, 1031
AspS9I	GGNCC	3 cut(s)	175, 196, 967
AsuC2I	CCSGG	1 cut(s)	910
AsuHPI	GGTGA	3 cut(s)	145, 551, 578
AvaII	GGWCC	1 cut(s)	967
BanI	GGYRCC	1 cut(s)	618
Bbv12I	GWGCWC	2 cut(s)	231, 1017
BbvI	GCAGC	2 cut(s)	62, 375
BccI	CCATC	1 cut(s)	977
BceAI	ACGGC	2 cut(s)	162, 714
BciT130I	CCWGG	1 cut(s)	524
BclI	TGATCA	1 cut(s)	745
BcnI	CCSGG	1 cut(s)	910
BcoDI	GTCTC	2 cut(s)	109, 1038
BfaI	CTAG	2 cut(s)	801, 846
BfoI	RGCGCY	1 cut(s)	694
BisI	GCNGC	4 cut(s)	51, 389, 439, 442
BlsI	GCNGC	4 cut(s)	52, 390, 440, 443
Bme1390I	CCNGG	2 cut(s)	524, 910
Bme18I	GGWCC	1 cut(s)	967
BmgT120I	GGNCC	3 cut(s)	175, 196, 967
BmiI	GGNNCC	2 cut(s)	620, 897
BmrFI	CCNGG	2 cut(s)	524, 910
BplI	GAGNNNNNCTC	2 cut(s)	107, 139
BpmI	CTGGAG	2 cut(s)	245, 545
Bpu10I	CCTNAGC	3 cut(s)	576, 891, 1016
BpuEI	CTTGAG	2 cut(s)	508, 756
BpuMI	CCSGG	1 cut(s)	910
BsaJI	CCNNGG	1 cut(s)	439
BsaWI	WCCGGW	1 cut(s)	940
Bsc4I	CCNNNNNNNGG	2 cut(s)	205, 563
Bse1I	ACTGG	1 cut(s)	557
Bse3DI	GCAATG	3 cut(s)	346, 467, 589
BseBI	CCWGG	1 cut(s)	524
BseDI	CCNNGG	1 cut(s)	439
BseGI	GGATG	1 cut(s)	222
BseLI	CCNNNNNNNGG	2 cut(s)	205, 563
BseMI	GCAATG	3 cut(s)	346, 467, 589
BseMII	CTCAG	4 cut(s)	433, 590, 844, 1030
BseNI	ACTGG	1 cut(s)	557
BseRI	GAGGAG	1 cut(s)	731
BseXI	GCAGC	2 cut(s)	62, 375
BseYI	CCCAGC	1 cut(s)	1031
BsgI	GTGCAG	1 cut(s)	608
Bsh1236I	CGCG	1 cut(s)	441
Bsh1285I	CGRYCG	1 cut(s)	189
BshFI	GGCC	3 cut(s)	177, 197, 320
BshNI	GGYRCC	1 cut(s)	618
BsiEI	CGRYCG	1 cut(s)	189
BsiHKAI	GWGCWC	2 cut(s)	231, 1017
BsiSI	CCGG	2 cut(s)	910, 941
BslFI	GGGAC	1 cut(s)	515
BslI	CCNNNNNNNGG	2 cut(s)	205, 563
BsmAI	GTCTC	2 cut(s)	109, 1038
BsmFI	GGGAC	1 cut(s)	515
BsmI	GAATGC	1 cut(s)	330
BsnI	GGCC	3 cut(s)	177, 197, 320
Bsp1286I	GDGCHC	2 cut(s)	231, 1017
Bsp1407I	TGTACA	1 cut(s)	549
Bsp143I	GATC	4 cut(s)	80, 667, 745, 754
BspACI	CCGC	3 cut(s)	142, 439, 441
BspANI	GGCC	3 cut(s)	177, 197, 320
BspCNI	CTCAG	4 cut(s)	432, 589, 843, 1029
BspFNI	CGCG	1 cut(s)	441
BspHI	TCATGA	1 cut(s)	430
BspLI	GGNNCC	2 cut(s)	620, 897
BspPI	GGATC	1 cut(s)	662
BspQI	GCTCTTC	1 cut(s)	155
BspT107I	GGYRCC	1 cut(s)	618
BsrDI	GCAATG	3 cut(s)	346, 467, 589
BsrGI	TGTACA	1 cut(s)	549
BsrI	ACTGG	1 cut(s)	557
BssECI	CCNNGG	1 cut(s)	439
BssMI	GATC	4 cut(s)	80, 667, 745, 754
Bst2UI	CCWGG	1 cut(s)	524
Bst4CI	ACNGT	3 cut(s)	103, 407, 545
Bst6I	CTCTTC	2 cut(s)	34, 155
BstAUI	TGTACA	1 cut(s)	549
BstC8I	GCNNGC	6 cut(s)	146, 393, 681, 989, 1023, 1027
BstDEI	CTNAG	5 cut(s)	419, 576, 830, 891, 1016
BstDSI	CCRYGG	1 cut(s)	439
BstF5I	GGATG	1 cut(s)	222
BstFNI	CGCG	1 cut(s)	441
BstH2I	RGCGCY	1 cut(s)	694
BstHHI	GCGC	2 cut(s)	693, 1031
BstKTI	GATC	4 cut(s)	83, 670, 748, 757
BstMAI	GTCTC	2 cut(s)	109, 1038
BstMBI	GATC	4 cut(s)	80, 667, 745, 754
BstMCI	CGRYCG	1 cut(s)	189
BstMWI	GCNNNNNNNGC	2 cut(s)	336, 984
BstNI	CCWGG	1 cut(s)	524
BstNSI	RCATGY	2 cut(s)	995, 1025
BstSCI	CCNGG	2 cut(s)	522, 908
BstUI	CGCG	1 cut(s)	441
BstV1I	GCAGC	2 cut(s)	62, 375
BstXI	CCANNNNNNTGG	2 cut(s)	615, 943
BsuRI	GGCC	3 cut(s)	177, 197, 320
BtgI	CCRYGG	1 cut(s)	439
BtsCI	GGATG	1 cut(s)	222
BtsI	GCAGTG	1 cut(s)	596
BtsIMutI	CAGTG	3 cut(s)	263, 412, 596
Cac8I	GCNNGC	6 cut(s)	146, 393, 681, 989, 1023, 1027
CciI	TCATGA	1 cut(s)	430
CfoI	GCGC	2 cut(s)	693, 1031
Cfr13I	GGNCC	3 cut(s)	175, 196, 967
Cfr42I	CCGCGG	1 cut(s)	442
Csp6I	GTAC	1 cut(s)	550
CviAII	CATG	6 cut(s)	205, 397, 431, 964, 992, 1022
CviQI	GTAC	1 cut(s)	550
DdeI	CTNAG	5 cut(s)	419, 576, 830, 891, 1016
DpnI	GATC	4 cut(s)	82, 669, 747, 756
DpnII	GATC	4 cut(s)	80, 667, 745, 754
Eam1104I	CTCTTC	2 cut(s)	34, 155
EarI	CTCTTC	2 cut(s)	34, 155
Eco47I	GGWCC	1 cut(s)	967
EcoRII	CCWGG	1 cut(s)	522
FaeI	CATG	6 cut(s)	208, 400, 434, 967, 995, 1025
FaqI	GGGAC	1 cut(s)	515
FatI	CATG	6 cut(s)	204, 396, 430, 963, 991, 1021
FbaI	TGATCA	1 cut(s)	745
FblI	GTMKAC	1 cut(s)	255
Fnu4HI	GCNGC	4 cut(s)	51, 389, 439, 442
FokI	GGATG	1 cut(s)	229
Fsp4HI	GCNGC	4 cut(s)	51, 389, 439, 442
FspBI	CTAG	2 cut(s)	801, 846
GlaI	GCGC	2 cut(s)	692, 1030
GluI	GCNGC	4 cut(s)	51, 389, 439, 442
GsaI	CCCAGC	1 cut(s)	1035
GsuI	CTGGAG	2 cut(s)	245, 545
HaeII	RGCGCY	1 cut(s)	694
HaeIII	GGCC	3 cut(s)	177, 197, 320
HapII	CCGG	2 cut(s)	910, 941
HhaI	GCGC	2 cut(s)	693, 1031
Hin1II	CATG	6 cut(s)	208, 400, 434, 967, 995, 1025
Hin6I	GCGC	2 cut(s)	691, 1029
HinP1I	GCGC	2 cut(s)	691, 1029
HindIII	AAGCTT	1 cut(s)	677
HinfI	GANTC	7 cut(s)	66, 191, 271, 308, 359, 423, 459
HpaII	CCGG	2 cut(s)	910, 941
HphI	GGTGA	3 cut(s)	145, 551, 578
Hpy166II	GTNNAC	1 cut(s)	256
Hpy188I	TCNGA	4 cut(s)	336, 358, 422, 833
Hpy188III	TCNNGA	6 cut(s)	374, 431, 752, 758, 773, 801
Hpy8I	GTNNAC	1 cut(s)	256
HpyAV	CCTTC	1 cut(s)	296
HpyCH4III	ACNGT	3 cut(s)	103, 407, 545
HpyCH4V	TGCA	8 cut(s)	58, 330, 391, 589, 683, 818, 883, 978
HpyF10VI	GCNNNNNNNGC	2 cut(s)	336, 984
HpyF3I	CTNAG	5 cut(s)	419, 576, 830, 891, 1016
Hsp92II	CATG	6 cut(s)	208, 400, 434, 967, 995, 1025
HspAI	GCGC	2 cut(s)	691, 1029
Ksp22I	TGATCA	1 cut(s)	745
KspI	CCGCGG	1 cut(s)	442
Kzo9I	GATC	4 cut(s)	80, 667, 745, 754
LguI	GCTCTTC	1 cut(s)	155
LmnI	GCTCC	1 cut(s)	226
Lsp1109I	GCAGC	2 cut(s)	62, 375
MaeI	CTAG	2 cut(s)	801, 846
MaeIII	GTNAC	3 cut(s)	179, 412, 539
MalI	GATC	4 cut(s)	82, 669, 747, 756
MboI	GATC	4 cut(s)	80, 667, 745, 754
MboII	GAAGA	5 cut(s)	21, 30, 90, 142, 832
MfeI	CAATTG	1 cut(s)	813
MhlI	GDGCHC	2 cut(s)	231, 1017
MluCI	AATT	7 cut(s)	325, 447, 697, 736, 813, 971, 1007
MlyI	GAGTC	4 cut(s)	200, 265, 317, 468
MseI	TTAA	2 cut(s)	246, 474
MslI	CAYNNNNRTG	2 cut(s)	383, 941
MspA1I	CMGCKG	1 cut(s)	441
MspI	CCGG	2 cut(s)	910, 941
MspR9I	CCNGG	2 cut(s)	524, 910
MunI	CAATTG	1 cut(s)	813
Mva1269I	GAATGC	1 cut(s)	330
MvaI	CCWGG	1 cut(s)	524
MvnI	CGCG	1 cut(s)	441
MwoI	GCNNNNNNNGC	2 cut(s)	336, 984
NciI	CCSGG	1 cut(s)	910
NdeII	GATC	4 cut(s)	80, 667, 745, 754
NlaIII	CATG	6 cut(s)	208, 400, 434, 967, 995, 1025
NlaIV	GGNNCC	2 cut(s)	620, 897
NmuCI	GTSAC	3 cut(s)	179, 412, 539
NspI	RCATGY	2 cut(s)	995, 1025
PaeI	GCATGC	1 cut(s)	1025
PagI	TCATGA	1 cut(s)	430
PciSI	GCTCTTC	1 cut(s)	155
PctI	GAATGC	1 cut(s)	330
PfeI	GAWTC	3 cut(s)	66, 359, 423
PflFI	GACNNNGTC	1 cut(s)	190
PflMI	CCANNNNNTGG	1 cut(s)	205
PkrI	GCNGC	4 cut(s)	52, 390, 440, 443
PleI	GAGTC	4 cut(s)	199, 265, 316, 467
PpsI	GAGTC	4 cut(s)	199, 265, 316, 467
Psp6I	CCWGG	1 cut(s)	522
PspFI	CCCAGC	1 cut(s)	1031
PspGI	CCWGG	1 cut(s)	522
PspN4I	GGNNCC	2 cut(s)	620, 897
PspPI	GGNCC	3 cut(s)	175, 196, 967
PsyI	GACNNNGTC	1 cut(s)	190
RsaI	GTAC	1 cut(s)	551
RsaNI	GTAC	1 cut(s)	550
RseI	CAYNNNNRTG	2 cut(s)	383, 941
SacII	CCGCGG	1 cut(s)	442
SapI	GCTCTTC	1 cut(s)	155
SaqAI	TTAA	2 cut(s)	246, 474
SatI	GCNGC	4 cut(s)	51, 389, 439, 442
Sau3AI	GATC	4 cut(s)	80, 667, 745, 754
Sau96I	GGNCC	3 cut(s)	175, 196, 967
SchI	GAGTC	4 cut(s)	200, 265, 317, 468
ScrFI	CCNGG	2 cut(s)	524, 910
SduI	GDGCHC	2 cut(s)	231, 1017
Sfr303I	CCGCGG	1 cut(s)	442
SgrBI	CCGCGG	1 cut(s)	442
SinI	GGWCC	1 cut(s)	967
SmiMI	CAYNNNNRTG	2 cut(s)	383, 941
SmlI	CTYRAG	2 cut(s)	487, 771
SmoI	CTYRAG	2 cut(s)	487, 771
SphI	GCATGC	1 cut(s)	1025
Sse9I	AATT	7 cut(s)	325, 447, 697, 736, 813, 971, 1007
SsiI	CCGC	3 cut(s)	142, 439, 441
SspMI	CTAG	2 cut(s)	801, 846
StyD4I	CCNGG	2 cut(s)	522, 908
TaaI	ACNGT	3 cut(s)	103, 407, 545
TaqII	GACCGA	1 cut(s)	203
TasI	AATT	7 cut(s)	325, 447, 697, 736, 813, 971, 1007
TatI	WGTACW	1 cut(s)	549
TauI	GCSGC	2 cut(s)	441, 444
TfiI	GAWTC	3 cut(s)	66, 359, 423
Tru1I	TTAA	2 cut(s)	246, 474
Tru9I	TTAA	2 cut(s)	246, 474
TscAI	CASTG	3 cut(s)	270, 412, 596
TseFI	GTSAC	3 cut(s)	179, 412, 539
TseI	GCWGC	2 cut(s)	50, 388
Tsp45I	GTSAC	3 cut(s)	179, 412, 539
TspDTI	ATGAA	3 cut(s)	419, 447, 644
TspRI	CASTG	3 cut(s)	270, 412, 596
Tth111I	GACNNNGTC	1 cut(s)	190
Van91I	CCANNNNNTGG	1 cut(s)	205
VpaK11BI	GGWCC	1 cut(s)	967
XapI	RAATTY	3 cut(s)	697, 736, 1007
XbaI	TCTAGA	1 cut(s)	800
XceI	RCATGY	2 cut(s)	995, 1025
XmiI	GTMKAC	1 cut(s)	255
XspI	CTAG	2 cut(s)	801, 846

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.