FvH4_3g37700

Sugar phosphate phosphate translocator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000810
Physical Location & Seq
Forward (+)
32288041 .. 32290521
2481 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g37700.t1

Sequence Viewer

Length: 918 bp
ATGGCGTCGAGCCGGGTCTTCACCGTGGGGTTGATAACAGCATGGTACTCCTCAAACATCGGAGTTCTGCTGTTGAACAAGTTCCTCCTAACAAATTACGGTTTCAAGTACCCGATCTTCCTCACCCTCTGCCATATGCTGGCTTGCTCTCTCTTGAGCTACATTGCCATTGCATGGCTCAAGGTGGTTCCCATGCAGAGCATCAGGTCGAGGGTCCAGTTCATGAAGATATCGTCGCTCGGTTTCATCTTCTGTTTGTCGGTCGTCGGCGGCAACATCTCGCTCCGGTATCTGGCCGTGTCGTTCAACCAGGCGGTGGGCGCCACGACGCCCTTCTTCACGGCGGTTTTCGCGTACTTGATGACTCTCAAGAAGGAGGGCTGGCTCACGTACGTAACTCTTATACCTGTCGTCACCGGCGTTATTATTGCCAGCGGGGGAGAGCCGAGCTTTCACTTCTTTGGATTTATGATGTGCATTATTGCAACAGCAGCACGGGCGCTCAAGTCAGTTCTTCAAGGGATACTGCTGTCGTCTGAAGCGGAAAAGCTAAATTCTATGAACCTCCTCATGTACATGGGACCTGTAGCTTGTGTGATTCTTCTTCCTGCGGCACTTTTTATGGAAGAGAATGTGGTTGGGATAGCCATTGCTCTTGCAAGAGATGATGTGAGCATAGTGTGGTATCTAATATTCAATTCTGCCCTTGCATACTTTGTGAACTTGACCAACTTCTTGGTAACCAAGCACACAAGTCCCCTGACTCTCCAGGTGTTGGGGAACGCAAAAGGAGCTGTTGCTGTGGTTGTTTCAATTTTGATATTCAGGAATCCAGTATCTGTAACTGGGATGATGGGTTATGGTCTCACAGTAACAGGAGTAATCCTCTATAGTGAAGCCAAGAAAAGGGGTAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPT

Protein Analysis

306

Amino Acids

33.23

Weight (kDa)

9.61

Isoelectric Point (pI)

32.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPT PF03151 11 - 298 2.1e-47 Triose-phosphate Transporter family
UAA PF08449 27 - 300 2.1e-11 UAA transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 320
AccB7I CCANNNNNTGG 4 cut(s) 139, 174, 316, 775
AccII CGCG 1 cut(s) 353
AciI CCGC 6 cut(s) 270, 314, 344, 435, 542, 611
AcoI YGGCCR 1 cut(s) 294
AcsI RAATTY 1 cut(s) 553
AcuI CTGAAG 1 cut(s) 558
AcyI GRCGYC 3 cut(s) 5, 321, 329
AfaI GTAC 5 cut(s) 47, 110, 356, 392, 575
AfiI CCNNNNNNNGG 6 cut(s) 139, 174, 292, 316, 775, 906
AgsI TTSAA 6 cut(s) 76, 106, 307, 518, 697, 813
AjnI CCWGG 2 cut(s) 309, 768
AluBI AGCT 5 cut(s) 159, 450, 550, 590, 794
AluI AGCT 5 cut(s) 159, 450, 550, 590, 794
Alw26I GTCTC 1 cut(s) 869
AlwNI CAGNNNCTG 1 cut(s) 839
AoxI GGCC 1 cut(s) 294
ApeKI GCWGC 1 cut(s) 491
ApoI RAATTY 1 cut(s) 553
Asp700I GAANNNNTTC 1 cut(s) 80
AspLEI GCGC 2 cut(s) 323, 502
AspS9I GGNCC 2 cut(s) 214, 581
AsuC2I CCSGG 1 cut(s) 14
AsuHPI GGTGA 3 cut(s) 13, 115, 406
AvaII GGWCC 2 cut(s) 214, 581
BaeI ACNNNNGTAYC 2 cut(s) 515, 548
BanI GGYRCC 1 cut(s) 320
BarI GAAGNNNNNNTAC 2 cut(s) 101, 133
BbsI GAAGAC 1 cut(s) 10
BbvI GCAGC 1 cut(s) 503
BccI CCATC 1 cut(s) 847
BceAI ACGGC 2 cut(s) 281, 357
BciT130I CCWGG 2 cut(s) 311, 770
BciVI GTATCC 1 cut(s) 516
BcnI CCSGG 1 cut(s) 14
BcoDI GTCTC 1 cut(s) 869
BfmI CTRYAG 2 cut(s) 585, 889
BfoI RGCGCY 2 cut(s) 324, 503
BfuI GTATCC 1 cut(s) 516
BisI GCNGC 3 cut(s) 271, 492, 612
BlsI GCNGC 3 cut(s) 272, 493, 613
Bme1390I CCNGG 3 cut(s) 14, 311, 770
Bme18I GGWCC 2 cut(s) 214, 581
BmgT120I GGNCC 2 cut(s) 214, 581
BmiI GGNNCC 4 cut(s) 189, 215, 322, 582
BmrFI CCNGG 3 cut(s) 14, 311, 770
BmrI ACTGGG 1 cut(s) 855
BmsI GCATC 1 cut(s) 210
BmuI ACTGGG 1 cut(s) 855
BpiI GAAGAC 1 cut(s) 10
BplI GAGNNNNNCTC 2 cut(s) 870, 902
BpmI CTGGAG 1 cut(s) 752
BpuEI CTTGAG 4 cut(s) 164, 175, 353, 488
BpuMI CCSGG 1 cut(s) 14
BsaAI YACGTR 2 cut(s) 390, 394
BsaHI GRCGYC 3 cut(s) 5, 321, 329
BsaI GGTCTC 1 cut(s) 869
BsaJI CCNNGG 1 cut(s) 24
BsaWI WCCGGW 1 cut(s) 285
Bsc4I CCNNNNNNNGG 6 cut(s) 139, 174, 292, 316, 775, 906
Bse118I RCCGGY 1 cut(s) 416
Bse1I ACTGG 3 cut(s) 217, 833, 850
Bse3DI GCAATG 3 cut(s) 162, 168, 648
BseBI CCWGG 2 cut(s) 311, 770
BseDI CCNNGG 1 cut(s) 24
BseGI GGATG 1 cut(s) 855
BseLI CCNNNNNNNGG 6 cut(s) 139, 174, 292, 316, 775, 906
BseMI GCAATG 3 cut(s) 162, 168, 648
BseNI ACTGG 3 cut(s) 217, 833, 850
BseRI GAGGAG 2 cut(s) 40, 557
BseXI GCAGC 1 cut(s) 503
Bsh1236I CGCG 1 cut(s) 353
Bsh1285I CGRYCG 1 cut(s) 264
BshFI GGCC 1 cut(s) 296
BshNI GGYRCC 1 cut(s) 320
BsiEI CGRYCG 1 cut(s) 264
BsiSI CCGG 3 cut(s) 13, 286, 417
BsiWI CGTACG 1 cut(s) 390
BslFI GGGAC 2 cut(s) 594, 741
BslI CCNNNNNNNGG 6 cut(s) 139, 174, 292, 316, 775, 906
BsmAI GTCTC 1 cut(s) 869
BsmFI GGGAC 2 cut(s) 594, 741
BsnI GGCC 1 cut(s) 296
Bso31I GGTCTC 1 cut(s) 869
Bsp1407I TGTACA 1 cut(s) 573
Bsp143I GATC 1 cut(s) 114
BspACI CCGC 6 cut(s) 270, 314, 344, 435, 542, 611
BspANI GGCC 1 cut(s) 296
BspFNI CGCG 1 cut(s) 353
BspHI TCATGA 1 cut(s) 222
BspLI GGNNCC 4 cut(s) 189, 215, 322, 582
BspT107I GGYRCC 1 cut(s) 320
BspTNI GGTCTC 1 cut(s) 869
BsrDI GCAATG 3 cut(s) 162, 168, 648
BsrFI RCCGGY 1 cut(s) 416
BsrGI TGTACA 1 cut(s) 573
BsrI ACTGG 3 cut(s) 217, 833, 850
BssAI RCCGGY 1 cut(s) 416
BssECI CCNNGG 1 cut(s) 24
BssMI GATC 1 cut(s) 114
BssNI GRCGYC 3 cut(s) 5, 321, 329
Bst2UI CCWGG 2 cut(s) 311, 770
Bst4CI ACNGT 3 cut(s) 25, 101, 871
Bst6I CTCTTC 1 cut(s) 621
BstACI GRCGYC 3 cut(s) 5, 321, 329
BstAUI TGTACA 1 cut(s) 573
BstBAI YACGTR 2 cut(s) 390, 394
BstC8I GCNNGC 4 cut(s) 141, 145, 383, 433
BstDSI CCRYGG 1 cut(s) 24
BstEII GGTNACC 1 cut(s) 739
BstF5I GGATG 1 cut(s) 855
BstFNI CGCG 1 cut(s) 353
BstH2I RGCGCY 2 cut(s) 324, 503
BstHHI GCGC 2 cut(s) 323, 502
BstKTI GATC 1 cut(s) 117
BstMAI GTCTC 1 cut(s) 869
BstMBI GATC 1 cut(s) 114
BstMCI CGRYCG 1 cut(s) 264
BstMWI GCNNNNNNNGC 5 cut(s) 320, 350, 491, 497, 791
BstNI CCWGG 2 cut(s) 311, 770
BstPI GGTNACC 1 cut(s) 739
BstSCI CCNGG 3 cut(s) 12, 309, 768
BstSFI CTRYAG 2 cut(s) 585, 889
BstSNI TACGTA 1 cut(s) 394
BstUI CGCG 1 cut(s) 353
BstV1I GCAGC 1 cut(s) 503
BstV2I GAAGAC 1 cut(s) 10
BstXI CCANNNNNNTGG 1 cut(s) 736
BsuI GTATCC 1 cut(s) 516
BsuRI GGCC 1 cut(s) 296
BtgI CCRYGG 1 cut(s) 24
BtsCI GGATG 1 cut(s) 855
Cac8I GCNNGC 4 cut(s) 141, 145, 383, 433
CaiI CAGNNNCTG 1 cut(s) 839
CciI TCATGA 1 cut(s) 222
CfoI GCGC 2 cut(s) 323, 502
Cfr10I RCCGGY 1 cut(s) 416
Cfr13I GGNCC 2 cut(s) 214, 581
CseI GACGC 1 cut(s) 337
Csp6I GTAC 5 cut(s) 46, 109, 355, 391, 574
CviAII CATG 6 cut(s) 42, 174, 193, 223, 571, 577
CviQI GTAC 5 cut(s) 46, 109, 355, 391, 574
DinI GGCGCC 1 cut(s) 322
DpnI GATC 1 cut(s) 116
DpnII GATC 1 cut(s) 114
EaeI YGGCCR 1 cut(s) 294
Eam1104I CTCTTC 1 cut(s) 621
EarI CTCTTC 1 cut(s) 621
Eco105I TACGTA 1 cut(s) 394
Eco31I GGTCTC 1 cut(s) 869
Eco32I GATATC 1 cut(s) 231
Eco47I GGWCC 2 cut(s) 214, 581
Eco57I CTGAAG 1 cut(s) 558
Eco91I GGTNACC 1 cut(s) 739
EcoO109I RGGNCCY 1 cut(s) 581
EcoO65I GGTNACC 1 cut(s) 739
EcoRII CCWGG 2 cut(s) 309, 768
EcoRV GATATC 1 cut(s) 231
EgeI GGCGCC 1 cut(s) 322
EheI GGCGCC 1 cut(s) 322
FaeI CATG 6 cut(s) 45, 177, 196, 226, 574, 580
FaqI GGGAC 2 cut(s) 594, 741
FatI CATG 6 cut(s) 41, 173, 192, 222, 570, 576
FauI CCCGC 1 cut(s) 428
FauNDI CATATG 1 cut(s) 135
Fnu4HI GCNGC 3 cut(s) 271, 492, 612
FokI GGATG 1 cut(s) 862
Fsp4HI GCNGC 3 cut(s) 271, 492, 612
GlaI GCGC 2 cut(s) 322, 501
GluI GCNGC 3 cut(s) 271, 492, 612
GsuI CTGGAG 1 cut(s) 752
HaeII RGCGCY 2 cut(s) 324, 503
HaeIII GGCC 1 cut(s) 296
HapII CCGG 3 cut(s) 13, 286, 417
HgaI GACGC 1 cut(s) 337
HhaI GCGC 2 cut(s) 323, 502
Hin1I GRCGYC 3 cut(s) 5, 321, 329
Hin1II CATG 6 cut(s) 45, 177, 196, 226, 574, 580
Hin6I GCGC 2 cut(s) 321, 500
HinP1I GCGC 2 cut(s) 321, 500
HinfI GANTC 4 cut(s) 364, 598, 763, 829
HpaII CCGG 3 cut(s) 13, 286, 417
HphI GGTGA 3 cut(s) 13, 115, 406
Hpy166II GTNNAC 1 cut(s) 721
Hpy188I TCNGA 2 cut(s) 62, 538
Hpy188III TCNNGA 4 cut(s) 154, 223, 370, 826
Hpy8I GTNNAC 1 cut(s) 721
Hpy99I CGWCG 4 cut(s) 10, 238, 269, 331
HpyAV CCTTC 2 cut(s) 343, 367
HpyCH4III ACNGT 3 cut(s) 25, 101, 871
HpyCH4IV ACGT 2 cut(s) 389, 393
HpyCH4V TGCA 6 cut(s) 173, 196, 477, 485, 659, 710
HpyF10VI GCNNNNNNNGC 5 cut(s) 320, 350, 491, 497, 791
HpySE526I ACGT 2 cut(s) 389, 393
Hsp92I GRCGYC 3 cut(s) 5, 321, 329
Hsp92II CATG 6 cut(s) 45, 177, 196, 226, 574, 580
HspAI GCGC 2 cut(s) 321, 500
KasI GGCGCC 1 cut(s) 320
Kzo9I GATC 1 cut(s) 114
LmnI GCTCC 2 cut(s) 288, 791
Lsp1109I GCAGC 1 cut(s) 503
LweI GCATC 1 cut(s) 210
MaeII ACGT 2 cut(s) 389, 393
MaeIII GTNAC 5 cut(s) 394, 412, 739, 841, 871
MalI GATC 1 cut(s) 116
MboI GATC 1 cut(s) 114
MboII GAAGA 9 cut(s) 10, 109, 238, 241, 328, 506, 593, 596, 638
MluCI AATT 4 cut(s) 94, 553, 697, 813
Mly113I GGCGCC 1 cut(s) 321
MlyI GAGTC 2 cut(s) 358, 757
MnlI CCTC 9 cut(s) 61, 95, 131, 137, 204, 370, 575, 578, 896
MroXI GAANNNNTTC 1 cut(s) 80
MslI CAYNNNNRTG 1 cut(s) 575
MspA1I CMGCKG 1 cut(s) 435
MspI CCGG 3 cut(s) 13, 286, 417
MspR9I CCNGG 3 cut(s) 14, 311, 770
MvaI CCWGG 2 cut(s) 311, 770
MvnI CGCG 1 cut(s) 353
MwoI GCNNNNNNNGC 5 cut(s) 320, 350, 491, 497, 791
NarI GGCGCC 1 cut(s) 321
NciI CCSGG 1 cut(s) 14
NdeI CATATG 1 cut(s) 135
NdeII GATC 1 cut(s) 114
NlaIII CATG 6 cut(s) 45, 177, 196, 226, 574, 580
NlaIV GGNNCC 4 cut(s) 189, 215, 322, 582
NmeAIII GCCGAG 1 cut(s) 471
NmuCI GTSAC 1 cut(s) 412
PagI TCATGA 1 cut(s) 222
PcsI WCGNNNNNNNCGW 1 cut(s) 417
PdmI GAANNNNTTC 1 cut(s) 80
PfeI GAWTC 2 cut(s) 598, 829
Pfl23II CGTACG 1 cut(s) 390
PflMI CCANNNNNTGG 4 cut(s) 139, 174, 316, 775
PkrI GCNGC 3 cut(s) 272, 493, 613
PleI GAGTC 2 cut(s) 358, 757
PluTI GGCGCC 1 cut(s) 324
PpsI GAGTC 2 cut(s) 358, 757
Ppu21I YACGTR 2 cut(s) 390, 394
PpuMI RGGWCCY 1 cut(s) 581
Psp5II RGGWCCY 1 cut(s) 581
Psp6I CCWGG 2 cut(s) 309, 768
PspEI GGTNACC 1 cut(s) 739
PspGI CCWGG 2 cut(s) 309, 768
PspLI CGTACG 1 cut(s) 390
PspN4I GGNNCC 4 cut(s) 189, 215, 322, 582
PspPI GGNCC 2 cut(s) 214, 581
PspPPI RGGWCCY 1 cut(s) 581
PstNI CAGNNNCTG 1 cut(s) 839
RsaI GTAC 5 cut(s) 47, 110, 356, 392, 575
RsaNI GTAC 5 cut(s) 46, 109, 355, 391, 574
RseI CAYNNNNRTG 1 cut(s) 575
SatI GCNGC 3 cut(s) 271, 492, 612
Sau3AI GATC 1 cut(s) 114
Sau96I GGNCC 2 cut(s) 214, 581
SchI GAGTC 2 cut(s) 358, 757
ScrFI CCNGG 3 cut(s) 14, 311, 770
SfaNI GCATC 1 cut(s) 210
SfcI CTRYAG 2 cut(s) 585, 889
SfoI GGCGCC 1 cut(s) 322
SgrAI CRCCGGYG 1 cut(s) 416
SinI GGWCC 2 cut(s) 214, 581
SmiMI CAYNNNNRTG 1 cut(s) 575
SmlI CTYRAG 4 cut(s) 154, 179, 368, 503
SmoI CTYRAG 4 cut(s) 154, 179, 368, 503
SnaBI TACGTA 1 cut(s) 394
Sse9I AATT 4 cut(s) 94, 553, 697, 813
SsiI CCGC 6 cut(s) 270, 314, 344, 435, 542, 611
SspDI GGCGCC 1 cut(s) 320
SspI AATATT 1 cut(s) 693
StyD4I CCNGG 3 cut(s) 12, 309, 768
TaaI ACNGT 3 cut(s) 25, 101, 871
TaiI ACGT 2 cut(s) 392, 396
TaqI TCGA 2 cut(s) 8, 209
TaqII GACCGA 1 cut(s) 250
TasI AATT 4 cut(s) 94, 553, 697, 813
TatI WGTACW 1 cut(s) 573
TauI GCSGC 2 cut(s) 273, 614
TfiI GAWTC 2 cut(s) 598, 829
TseFI GTSAC 1 cut(s) 412
TseI GCWGC 1 cut(s) 491
Tsp45I GTSAC 1 cut(s) 412
TspDTI ATGAA 4 cut(s) 211, 235, 239, 575
Van91I CCANNNNNTGG 4 cut(s) 139, 174, 316, 775
VpaK11BI GGWCC 2 cut(s) 214, 581
XapI RAATTY 1 cut(s) 553
XmnI GAANNNNTTC 1 cut(s) 80
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.