Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0000810

Physical Location & Seq

Genomic Coordinates Reverse (-)

52562710 .. 52563438

Gene Structure 729 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0386900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGGCTTTATGGGTCCGAAACTGTGGCTTGCCTGTCAAATTCTTTAAGGATTATACTGTGGCTAAAATTGGCAGAGTTCTAGGAGATGTTGTTAAGGTTGATCAAGTTACTATTGGCCAAGCTAGAGGCAAATTTGCCAGAGTCTGTATTGAAGTTGATCTTAGCAAACCCCTGCGTCCTTTTGTTGAGGTGGAATCTGTTGCCTACCATGTTGTTTATGAAGGAATCTCTATGATCTGTTTTGAATGTGGTTGTTTTGGTCATGCTAAGGACAAGTGCCCAACTCTGCACACTGAACCAAGTGTTAACTCTCAAGATCAGGATGCCGGTAGTAACACCAATGAACAGGTAATGGTGCCCAAAGCAACTTCTGATTCTCAACAGGACATGGACACTTCCCAAGCTCATTCTATTCTCAAGGAGGACATGGGGCCATGGATGCTAATGAATTACAGGAATAAGAGGAGAACCAATGATAGTGGGGGAGCAAAGAAAACTATCAACAAGGGTTCTCGATTTACTGTGCTACAAGATGAGGAGGAACTGCCTTCTCATGAACCTGAGACTATTATTGATAATGCAACCAAACCTTTAACCCCTCCCATTGTGAAATTGTGGGCTAGCTTCCAAGATAAAAAGAAGAATTTCAACAAGCCAAGTGCTGCTAAAGCTGGTGCCAATTCAGCACCAATGATATTGGTATTGGTACCTCATCCTTGGGGACCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

242

Amino Acids

26.82

Weight (kDa)

8.16

Isoelectric Point (pI)

41.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000810)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11320 AT5G05820
fragaria_vesca	FvH4_3g37700 FvH4_6g12230 FvH4_6g12230 FvH4_7g23830 FvH4_7g23830 FvH4_7g23830 FvH4_7g23830 FvH4_7g23830
malus_domestica	MD01G1145600.v1.1 MD03G1078400.v1.1 MD04G1144900.v1.1 MD07G1212700.v1.1 MD12G1158900.v1.1
prunus_persica	Prupe.2G244900_v2.0.a1 Prupe.2G244900_v2.0.a1 Prupe.2G244900_v2.0.a1 Prupe.6G063400_v2.0.a1 Prupe.6G269300_v2.0.a1 Prupe.6G269300_v2.0.a1
pyrus_communis	pycom01g16510 pycom03g06280 pycom07g19540 pycom12g15080
rosa_chinensis	RchiOBHm_Chr1g0369201 RchiOBHm_Chr3g0464031 RchiOBHm_Chr5g0067971 RchiOBHm_Chr7g0183791
rosa_laevigata	RLG00000024727 RLG00000027147 RLG00000035948
rosa_multiflora	Rmu_co8032292.1_g000001 Rmu_sc0000435.1_g000038 Rmu_sc0001203.1_g000001 Rmu_sc0004616.1_g000004 Rmu_sc0005807.1_g000004 Rmu_sc0019331.1_g000001 Rmu_sc0028685.1_g000001
rosa_roxburghii	Rroxscaffold_1G00012630 Rroxscaffold_1G00013340 Rroxscaffold_4G00287870 Rroxscaffold_4G00291440 Rroxscaffold_5G00365160 Rroxscaffold_6G00416050
rosa_rugosa	Rorug01G0348800 Rorug01G0348800 Rorug01G0348800 Rorug01G0348900 Rorug03G0070200 Rorug04G0183800 Rorug05G0386900
rosa_samantha	Rh1AG355800 Rh1BG319400 Rh1CG333400 Rh1DG350100 Rh3BG131300 Rh3CG133600 Rh3DG132600 Rh5AG445800 Rh5AG536100 Rh5BG463300 Rh5CG485200 Rh5DG477300 Rh7CG459800
rosa_wichuraiana	Rw1G031400 Rw3G010730 Rw5G041630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	706
AccB1I	GGYRCC	3 cut(s)	355, 674, 706
AcoI	YGGCCR	1 cut(s)	115
AcsI	RAATTY	3 cut(s)	38, 131, 643
AfaI	GTAC	1 cut(s)	708
AgsI	TTSAA	3 cut(s)	152, 245, 649
AluBI	AGCT	4 cut(s)	122, 404, 624, 671
AluI	AGCT	4 cut(s)	122, 404, 624, 671
Alw26I	GTCTC	1 cut(s)	557
AlwNI	CAGNNNCTG	1 cut(s)	144
AoxI	GGCC	2 cut(s)	115, 431
ApeKI	GCWGC	1 cut(s)	662
ApoI	RAATTY	3 cut(s)	38, 131, 643
Asp700I	GAANNNNTTC	1 cut(s)	644
Asp718I	GGTACC	1 cut(s)	706
AspS9I	GGNCC	3 cut(s)	13, 431, 722
AsuNHI	GCTAGC	1 cut(s)	620
AvaII	GGWCC	2 cut(s)	13, 722
BaeGI	GKGCMC	2 cut(s)	281, 360
BalI	TGGCCA	1 cut(s)	117
BanI	GGYRCC	3 cut(s)	355, 674, 706
BbvI	GCAGC	1 cut(s)	649
BclI	TGATCA	1 cut(s)	100
BcoDI	GTCTC	1 cut(s)	557
BfaI	CTAG	3 cut(s)	80, 123, 621
BisI	GCNGC	1 cut(s)	663
BlsI	GCNGC	1 cut(s)	664
Bme18I	GGWCC	2 cut(s)	13, 722
BmgT120I	GGNCC	3 cut(s)	13, 431, 722
BmiI	GGNNCC	6 cut(s)	14, 357, 432, 676, 708, 723
BmsI	GCATC	2 cut(s)	313, 429
BmtI	GCTAGC	1 cut(s)	624
Bpu10I	CCTNAGC	1 cut(s)	267
BpuEI	CTTGAG	2 cut(s)	297, 401
BsaJI	CCNNGG	2 cut(s)	434, 716
BsaXI	ACNNNNNCTCC	2 cut(s)	75, 105
Bse118I	RCCGGY	1 cut(s)	326
BseDI	CCNNGG	2 cut(s)	434, 716
BseGI	GGATG	3 cut(s)	328, 444, 712
BseMII	CTCAG	1 cut(s)	552
BseRI	GAGGAG	2 cut(s)	478, 551
BseSI	GKGCMC	2 cut(s)	281, 360
BseXI	GCAGC	1 cut(s)	649
BsgI	GTGCAG	1 cut(s)	272
BshFI	GGCC	2 cut(s)	117, 433
BshNI	GGYRCC	3 cut(s)	355, 674, 706
BsiSI	CCGG	1 cut(s)	327
BsmAI	GTCTC	1 cut(s)	557
BsnI	GGCC	2 cut(s)	117, 433
Bsp1286I	GDGCHC	2 cut(s)	281, 360
Bsp143I	GATC	4 cut(s)	100, 157, 234, 316
Bsp19I	CCATGG	1 cut(s)	434
BspANI	GGCC	2 cut(s)	117, 433
BspCNI	CTCAG	1 cut(s)	553
BspHI	TCATGA	1 cut(s)	553
BspLI	GGNNCC	6 cut(s)	14, 357, 432, 676, 708, 723
BspOI	GCTAGC	1 cut(s)	624
BspT107I	GGYRCC	3 cut(s)	355, 674, 706
BsrFI	RCCGGY	1 cut(s)	326
BssAI	RCCGGY	1 cut(s)	326
BssECI	CCNNGG	2 cut(s)	434, 716
BssMI	GATC	4 cut(s)	100, 157, 234, 316
BssT1I	CCWWGG	2 cut(s)	434, 716
Bst4CI	ACNGT	3 cut(s)	23, 58, 523
BstC8I	GCNNGC	2 cut(s)	29, 622
BstDEI	CTNAG	3 cut(s)	161, 267, 561
BstDSI	CCRYGG	1 cut(s)	434
BstF5I	GGATG	3 cut(s)	328, 444, 712
BstKTI	GATC	4 cut(s)	103, 160, 237, 319
BstMAI	GTCTC	1 cut(s)	557
BstMBI	GATC	4 cut(s)	100, 157, 234, 316
BstMWI	GCNNNNNNNGC	3 cut(s)	439, 668, 683
BstSLI	GKGCMC	2 cut(s)	281, 360
BstV1I	GCAGC	1 cut(s)	649
BsuRI	GGCC	2 cut(s)	117, 433
BtgI	CCRYGG	1 cut(s)	434
BtsCI	GGATG	3 cut(s)	328, 444, 712
BtsIMutI	CAGTG	1 cut(s)	291
Cac8I	GCNNGC	2 cut(s)	29, 622
CaiI	CAGNNNCTG	1 cut(s)	144
CciI	TCATGA	1 cut(s)	553
Cfr10I	RCCGGY	1 cut(s)	326
Cfr13I	GGNCC	3 cut(s)	13, 431, 722
CseI	GACGC	1 cut(s)	164
Csp6I	GTAC	1 cut(s)	707
CspCI	CAANNNNNGTGG	2 cut(s)	460, 495
CviAII	CATG	6 cut(s)	209, 263, 388, 427, 435, 554
CviQI	GTAC	1 cut(s)	707
DdeI	CTNAG	3 cut(s)	161, 267, 561
DpnI	GATC	4 cut(s)	102, 159, 236, 318
DpnII	GATC	4 cut(s)	100, 157, 234, 316
EaeI	YGGCCR	1 cut(s)	115
Eco130I	CCWWGG	2 cut(s)	434, 716
Eco47I	GGWCC	2 cut(s)	13, 722
EcoO109I	RGGNCCY	1 cut(s)	722
EcoT14I	CCWWGG	2 cut(s)	434, 716
ErhI	CCWWGG	2 cut(s)	434, 716
FaeI	CATG	6 cut(s)	212, 266, 391, 430, 438, 557
FalI	AAGNNNNNCTT	2 cut(s)	144, 176
FatI	CATG	6 cut(s)	208, 262, 387, 426, 434, 553
FbaI	TGATCA	1 cut(s)	100
Fnu4HI	GCNGC	1 cut(s)	663
FokI	GGATG	3 cut(s)	335, 451, 699
Fsp4HI	GCNGC	1 cut(s)	663
FspBI	CTAG	3 cut(s)	80, 123, 621
GluI	GCNGC	1 cut(s)	663
HaeIII	GGCC	2 cut(s)	117, 433
HapII	CCGG	1 cut(s)	327
HgaI	GACGC	1 cut(s)	164
Hin1II	CATG	6 cut(s)	212, 266, 391, 430, 438, 557
HincII	GTYRAC	1 cut(s)	307
HindII	GTYRAC	1 cut(s)	307
HinfI	GANTC	4 cut(s)	141, 194, 225, 374
HpaI	GTTAAC	1 cut(s)	307
HpaII	CCGG	1 cut(s)	327
Hpy166II	GTNNAC	1 cut(s)	307
Hpy188I	TCNGA	2 cut(s)	17, 373
Hpy188III	TCNNGA	4 cut(s)	314, 320, 513, 554
Hpy8I	GTNNAC	1 cut(s)	307
HpyAV	CCTTC	2 cut(s)	215, 558
HpyCH4III	ACNGT	3 cut(s)	23, 58, 523
HpyCH4V	TGCA	2 cut(s)	289, 581
HpyF10VI	GCNNNNNNNGC	3 cut(s)	439, 668, 683
HpyF3I	CTNAG	3 cut(s)	161, 267, 561
Hsp92II	CATG	6 cut(s)	212, 266, 391, 430, 438, 557
KpnI	GGTACC	1 cut(s)	710
Ksp22I	TGATCA	1 cut(s)	100
KspAI	GTTAAC	1 cut(s)	307
Kzo9I	GATC	4 cut(s)	100, 157, 234, 316
LmnI	GCTCC	1 cut(s)	485
Lsp1109I	GCAGC	1 cut(s)	649
LweI	GCATC	2 cut(s)	313, 429
MaeI	CTAG	3 cut(s)	80, 123, 621
MaeIII	GTNAC	2 cut(s)	106, 332
MalI	GATC	4 cut(s)	102, 159, 236, 318
MboI	GATC	4 cut(s)	100, 157, 234, 316
MboII	GAAGA	1 cut(s)	652
MhlI	GDGCHC	2 cut(s)	281, 360
MlsI	TGGCCA	1 cut(s)	117
MluCI	AATT	7 cut(s)	38, 66, 131, 448, 611, 643, 679
MluNI	TGGCCA	1 cut(s)	117
MlyI	GAGTC	1 cut(s)	150
MnlI	CCTC	8 cut(s)	119, 181, 415, 456, 529, 532, 609, 720
Mox20I	TGGCCA	1 cut(s)	117
MroXI	GAANNNNTTC	1 cut(s)	644
MscI	TGGCCA	1 cut(s)	117
MseI	TTAA	4 cut(s)	45, 93, 306, 593
Msp20I	TGGCCA	1 cut(s)	117
MspI	CCGG	1 cut(s)	327
MwoI	GCNNNNNNNGC	3 cut(s)	439, 668, 683
NcoI	CCATGG	1 cut(s)	434
NdeII	GATC	4 cut(s)	100, 157, 234, 316
NheI	GCTAGC	1 cut(s)	620
NlaIII	CATG	6 cut(s)	212, 266, 391, 430, 438, 557
NlaIV	GGNNCC	6 cut(s)	14, 357, 432, 676, 708, 723
PagI	TCATGA	1 cut(s)	553
PdmI	GAANNNNTTC	1 cut(s)	644
PfeI	GAWTC	3 cut(s)	194, 225, 374
PkrI	GCNGC	1 cut(s)	664
PleI	GAGTC	1 cut(s)	149
PpsI	GAGTC	1 cut(s)	149
PpuMI	RGGWCCY	1 cut(s)	722
Psp5II	RGGWCCY	1 cut(s)	722
PspN4I	GGNNCC	6 cut(s)	14, 357, 432, 676, 708, 723
PspPI	GGNCC	3 cut(s)	13, 431, 722
PspPPI	RGGWCCY	1 cut(s)	722
PstNI	CAGNNNCTG	1 cut(s)	144
RsaI	GTAC	1 cut(s)	708
RsaNI	GTAC	1 cut(s)	707
SaqAI	TTAA	4 cut(s)	45, 93, 306, 593
SatI	GCNGC	1 cut(s)	663
Sau3AI	GATC	4 cut(s)	100, 157, 234, 316
Sau96I	GGNCC	3 cut(s)	13, 431, 722
SchI	GAGTC	1 cut(s)	150
SduI	GDGCHC	2 cut(s)	281, 360
SfaNI	GCATC	2 cut(s)	313, 429
SinI	GGWCC	2 cut(s)	13, 722
SmlI	CTYRAG	2 cut(s)	312, 416
SmoI	CTYRAG	2 cut(s)	312, 416
Sse9I	AATT	7 cut(s)	38, 66, 131, 448, 611, 643, 679
SspMI	CTAG	3 cut(s)	80, 123, 621
StyI	CCWWGG	2 cut(s)	434, 716
TaaI	ACNGT	3 cut(s)	23, 58, 523
TaqI	TCGA	1 cut(s)	514
TasI	AATT	7 cut(s)	38, 66, 131, 448, 611, 643, 679
TfiI	GAWTC	3 cut(s)	194, 225, 374
Tru1I	TTAA	4 cut(s)	45, 93, 306, 593
Tru9I	TTAA	4 cut(s)	45, 93, 306, 593
TscAI	CASTG	1 cut(s)	298
TseI	GCWGC	1 cut(s)	662
TspDTI	ATGAA	4 cut(s)	234, 357, 461, 570
TspRI	CASTG	1 cut(s)	298
VpaK11BI	GGWCC	2 cut(s)	13, 722
XapI	RAATTY	3 cut(s)	38, 131, 643
XmnI	GAANNNNTTC	1 cut(s)	644
XspI	CTAG	3 cut(s)	80, 123, 621

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.