Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0000810

Physical Location & Seq

Genomic Coordinates Forward (+)

45344098 .. 45350007

Gene Structure 5910 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG319400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGAAGGGGAAGAGCCGCTTGTTCACGATCGGGCTCGTGACGGCCTGGTACTCATCCAACATTGGCGTTCTGCTGCTGAACAAGTACTTGCTTAGCAACTATGGCTTCAAGTACCCGATCTTCCTCACCATGTGCCACATGACGGCGTGTTCTCTTCTCAGCTACATCGCAATCGCGTGGATGAAGATGGTGCCGATGCAGACCATTCGATCCCGGGTTCAGTTTCTGAAGATCACGGCGTTGAGTCTCGTGTTCTGTGTTTCTGTGGTGTTTGGGAACATTTCGCTGCGGTATTTGCCGGTGTCGTTTAACCAGGCTATAGGGGCAACCACGCCGTTCTTCACTGCCGTTTTCGCTTACTTTATGACCCTGAAAAGAGAGGCTTGGCTGACTTACCTGACGCTCGTTCCTGTGGTTACAGGGGTCATCATTGCCAGTGGGGGTGAACCAAGTTTCCATCTATTTGGGTTCTTAATTTGTATCGCAGCAACAGCTGCCAGGGCTCTTAAGTCAGTGCTACAAGGGATTTTGCTTTCTTCTGAAGGGGAGAAGCTGAATTCGATGAACCTCCTATTGTATATGGCTCCGATAGCCGTTGTTTTCCTACTCCCTGCAACACTTATCATGGAAGATAATGTCGTTGGGATAACATTAGCTCTTGCAAGAGATGATGTCAAGATCATATGGTATCTGTTATTCAATTCAGCATTGGCATATTTTGTAAATCTGACCAACTTTTTGGTCACAAAACACACCAGTGCTCTGACTCTTCAGGTATGTCTCCTTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0032991 GO:0034641 GO:0034645 GO:0042254 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0071840 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L35Ae

Protein Analysis

263

Amino Acids

29.12

Weight (kDa)

9.49

Isoelectric Point (pI)

32.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPT	PF03151	12 - 259	1.3e-35	Triose-phosphate Transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000810)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11320 AT5G05820
fragaria_vesca	FvH4_3g37700 FvH4_6g12230 FvH4_6g12230 FvH4_7g23830 FvH4_7g23830 FvH4_7g23830 FvH4_7g23830 FvH4_7g23830
malus_domestica	MD01G1145600.v1.1 MD03G1078400.v1.1 MD04G1144900.v1.1 MD07G1212700.v1.1 MD12G1158900.v1.1
prunus_persica	Prupe.2G244900_v2.0.a1 Prupe.2G244900_v2.0.a1 Prupe.2G244900_v2.0.a1 Prupe.6G063400_v2.0.a1 Prupe.6G269300_v2.0.a1 Prupe.6G269300_v2.0.a1
pyrus_communis	pycom01g16510 pycom03g06280 pycom07g19540 pycom12g15080
rosa_chinensis	RchiOBHm_Chr1g0369201 RchiOBHm_Chr3g0464031 RchiOBHm_Chr5g0067971 RchiOBHm_Chr7g0183791
rosa_laevigata	RLG00000024727 RLG00000027147 RLG00000035948
rosa_multiflora	Rmu_co8032292.1_g000001 Rmu_sc0000435.1_g000038 Rmu_sc0001203.1_g000001 Rmu_sc0004616.1_g000004 Rmu_sc0005807.1_g000004 Rmu_sc0019331.1_g000001 Rmu_sc0028685.1_g000001
rosa_roxburghii	Rroxscaffold_1G00012630 Rroxscaffold_1G00013340 Rroxscaffold_4G00287870 Rroxscaffold_4G00291440 Rroxscaffold_5G00365160 Rroxscaffold_6G00416050
rosa_rugosa	Rorug01G0348800 Rorug01G0348800 Rorug01G0348800 Rorug01G0348900 Rorug03G0070200 Rorug04G0183800 Rorug05G0386900
rosa_samantha	Rh1AG355800 Rh1BG319400 Rh1CG333400 Rh1DG350100 Rh3BG131300 Rh3CG133600 Rh3DG132600 Rh5AG445800 Rh5AG536100 Rh5BG463300 Rh5CG485200 Rh5DG477300 Rh7CG459800
rosa_wichuraiana	Rw1G031400 Rw3G010730 Rw5G041630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	190
AccII	CGCG	1 cut(s)	176
AciI	CCGC	2 cut(s)	16, 289
AclWI	GGATC	1 cut(s)	204
AcsI	RAATTY	1 cut(s)	556
AcuI	CTGAAG	3 cut(s)	248, 561, 755
AdeI	CACNNNGTG	1 cut(s)	132
AfaI	GTAC	3 cut(s)	50, 86, 113
AfiI	CCNNNNNNNGG	1 cut(s)	142
AflII	CTTAAG	1 cut(s)	506
AgsI	TTSAA	2 cut(s)	109, 700
AjnI	CCWGG	3 cut(s)	44, 312, 497
AleI	CACNNNNGTG	1 cut(s)	756
AloI	GAACNNNNNNTCC	2 cut(s)	438, 470
AluBI	AGCT	4 cut(s)	162, 494, 553, 656
AluI	AGCT	4 cut(s)	162, 494, 553, 656
Alw21I	GWGCWC	1 cut(s)	763
Alw26I	GTCTC	2 cut(s)	251, 785
AlwI	GGATC	1 cut(s)	204
AlwNI	CAGNNNCTG	1 cut(s)	226
Ama87I	CYCGRG	1 cut(s)	213
AoxI	GGCC	1 cut(s)	42
ApeKI	GCWGC	4 cut(s)	73, 286, 485, 494
ApoI	RAATTY	1 cut(s)	556
ArsI	GACNNNNNNTTYG	2 cut(s)	721, 753
AsuC2I	CCSGG	2 cut(s)	214, 215
AsuHPI	GGTGA	2 cut(s)	118, 455
AvaI	CYCGRG	1 cut(s)	213
BanI	GGYRCC	1 cut(s)	190
BanII	GRGCYC	2 cut(s)	36, 505
BarI	GAAGNNNNNNTAC	2 cut(s)	104, 136
BauI	CACGAG	2 cut(s)	35, 248
Bbv12I	GWGCWC	1 cut(s)	763
BbvI	GCAGC	4 cut(s)	60, 273, 481, 497
BccI	CCATC	2 cut(s)	181, 465
BceAI	ACGGC	6 cut(s)	57, 159, 252, 319, 332, 578
BcgI	CGANNNNNNTGC	2 cut(s)	188, 222
BciT130I	CCWGG	3 cut(s)	46, 314, 499
BcnI	CCSGG	2 cut(s)	214, 215
BcoDI	GTCTC	2 cut(s)	251, 785
BfmI	CTRYAG	1 cut(s)	318
BfrI	CTTAAG	1 cut(s)	506
BisI	GCNGC	5 cut(s)	16, 74, 287, 486, 495
BlpI	GCTNAGC	1 cut(s)	92
BlsI	GCNGC	5 cut(s)	17, 75, 288, 487, 496
BmcAI	AGTACT	1 cut(s)	86
Bme1390I	CCNGG	5 cut(s)	46, 214, 215, 314, 499
BmeT110I	CYCGRG	1 cut(s)	213
BmiI	GGNNCC	2 cut(s)	192, 585
BmrFI	CCNGG	5 cut(s)	46, 214, 215, 314, 499
BmsI	GCATC	1 cut(s)	186
Bpu1102I	GCTNAGC	1 cut(s)	92
BpuMI	CCSGG	2 cut(s)	214, 215
BsaJI	CCNNGG	2 cut(s)	213, 498
Bsc4I	CCNNNNNNNGG	1 cut(s)	142
Bse118I	RCCGGY	1 cut(s)	298
Bse1I	ACTGG	2 cut(s)	435, 756
Bse3DI	GCAATG	1 cut(s)	429
BseBI	CCWGG	3 cut(s)	46, 314, 499
BseDI	CCNNGG	2 cut(s)	213, 498
BseGI	GGATG	2 cut(s)	53, 186
BseLI	CCNNNNNNNGG	1 cut(s)	142
BseMI	GCAATG	1 cut(s)	429
BseMII	CTCAG	1 cut(s)	172
BseNI	ACTGG	2 cut(s)	435, 756
BseXI	GCAGC	4 cut(s)	60, 273, 481, 497
Bsh1236I	CGCG	1 cut(s)	176
Bsh1285I	CGRYCG	1 cut(s)	30
BshFI	GGCC	1 cut(s)	44
BshNI	GGYRCC	1 cut(s)	190
BsiEI	CGRYCG	1 cut(s)	30
BsiHKAI	GWGCWC	1 cut(s)	763
BsiHKCI	CYCGRG	1 cut(s)	213
BsiSI	CCGG	2 cut(s)	214, 299
BslI	CCNNNNNNNGG	1 cut(s)	142
BsmAI	GTCTC	2 cut(s)	251, 785
BsnI	GGCC	1 cut(s)	44
BsoBI	CYCGRG	1 cut(s)	213
Bsp1286I	GDGCHC	3 cut(s)	36, 505, 763
Bsp143I	GATC	5 cut(s)	27, 117, 209, 231, 678
Bsp1720I	GCTNAGC	1 cut(s)	92
BspACI	CCGC	2 cut(s)	16, 289
BspANI	GGCC	1 cut(s)	44
BspCNI	CTCAG	1 cut(s)	171
BspFNI	CGCG	1 cut(s)	176
BspLI	GGNNCC	2 cut(s)	192, 585
BspPI	GGATC	1 cut(s)	204
BspQI	GCTCTTC	1 cut(s)	5
BspT107I	GGYRCC	1 cut(s)	190
BspTI	CTTAAG	1 cut(s)	506
BsrDI	GCAATG	1 cut(s)	429
BsrFI	RCCGGY	1 cut(s)	298
BsrI	ACTGG	2 cut(s)	435, 756
BssAI	RCCGGY	1 cut(s)	298
BssECI	CCNNGG	2 cut(s)	213, 498
BssMI	GATC	5 cut(s)	27, 117, 209, 231, 678
BssSI	CACGAG	2 cut(s)	35, 248
Bst2BI	CACGAG	2 cut(s)	35, 248
Bst2UI	CCWGG	3 cut(s)	46, 314, 499
Bst6I	CTCTTC	3 cut(s)	5, 159, 774
BstAFI	CTTAAG	1 cut(s)	506
BstAPI	GCANNNNNTGC	1 cut(s)	494
BstDEI	CTNAG	2 cut(s)	92, 158
BstF5I	GGATG	2 cut(s)	53, 186
BstFNI	CGCG	1 cut(s)	176
BstKTI	GATC	5 cut(s)	30, 120, 212, 234, 681
BstMAI	GTCTC	2 cut(s)	251, 785
BstMBI	GATC	5 cut(s)	27, 117, 209, 231, 678
BstMCI	CGRYCG	1 cut(s)	30
BstMWI	GCNNNNNNNGC	8 cut(s)	102, 295, 323, 353, 491, 494, 500, 590
BstNI	CCWGG	3 cut(s)	46, 314, 499
BstSCI	CCNGG	5 cut(s)	44, 212, 213, 312, 497
BstSFI	CTRYAG	1 cut(s)	318
BstUI	CGCG	1 cut(s)	176
BstV1I	GCAGC	4 cut(s)	60, 273, 481, 497
BstXI	CCANNNNNNTGG	2 cut(s)	464, 739
BsuRI	GGCC	1 cut(s)	44
BtgZI	GCGATG	1 cut(s)	151
BtsCI	GGATG	2 cut(s)	53, 186
BtsI	GCAGTG	1 cut(s)	342
BtsIMutI	CAGTG	4 cut(s)	342, 442, 519, 763
CaiI	CAGNNNCTG	1 cut(s)	226
Cfr10I	RCCGGY	1 cut(s)	298
Cfr9I	CCCGGG	1 cut(s)	213
CseI	GACGC	1 cut(s)	409
Csp6I	GTAC	3 cut(s)	49, 85, 112
CviAII	CATG	3 cut(s)	130, 139, 625
CviQI	GTAC	3 cut(s)	49, 85, 112
DdeI	CTNAG	2 cut(s)	92, 158
DpnI	GATC	5 cut(s)	29, 119, 211, 233, 680
DpnII	GATC	5 cut(s)	27, 117, 209, 231, 678
DraIII	CACNNNGTG	1 cut(s)	132
Eam1104I	CTCTTC	3 cut(s)	5, 159, 774
EarI	CTCTTC	3 cut(s)	5, 159, 774
Eco24I	GRGCYC	2 cut(s)	36, 505
Eco57I	CTGAAG	3 cut(s)	248, 561, 755
Eco88I	CYCGRG	1 cut(s)	213
EcoRI	GAATTC	1 cut(s)	556
EcoRII	CCWGG	3 cut(s)	44, 312, 497
EcoT38I	GRGCYC	2 cut(s)	36, 505
FaeI	CATG	3 cut(s)	133, 142, 628
FalI	AAGNNNNNCTT	3 cut(s)	34, 367, 399
FatI	CATG	3 cut(s)	129, 138, 624
FauNDI	CATATG	1 cut(s)	683
Fnu4HI	GCNGC	5 cut(s)	16, 74, 287, 486, 495
FokI	GGATG	2 cut(s)	40, 193
FriOI	GRGCYC	2 cut(s)	36, 505
Fsp4HI	GCNGC	5 cut(s)	16, 74, 287, 486, 495
GluI	GCNGC	5 cut(s)	16, 74, 287, 486, 495
HaeIII	GGCC	1 cut(s)	44
HapII	CCGG	2 cut(s)	214, 299
HgaI	GACGC	1 cut(s)	409
Hin1II	CATG	3 cut(s)	133, 142, 628
HinfI	GANTC	2 cut(s)	244, 766
HpaII	CCGG	2 cut(s)	214, 299
HphI	GGTGA	2 cut(s)	118, 455
Hpy166II	GTNNAC	2 cut(s)	24, 446
Hpy188I	TCNGA	5 cut(s)	228, 541, 588, 729, 765
Hpy188III	TCNNGA	4 cut(s)	25, 37, 676, 789
Hpy8I	GTNNAC	2 cut(s)	24, 446
HpyAV	CCTTC	1 cut(s)	536
HpyCH4V	TGCA	3 cut(s)	199, 614, 662
HpyF10VI	GCNNNNNNNGC	8 cut(s)	102, 295, 323, 353, 491, 494, 500, 590
HpyF3I	CTNAG	2 cut(s)	92, 158
Hsp92II	CATG	3 cut(s)	133, 142, 628
Kzo9I	GATC	5 cut(s)	27, 117, 209, 231, 678
LguI	GCTCTTC	1 cut(s)	5
LmnI	GCTCC	1 cut(s)	589
Lsp1109I	GCAGC	4 cut(s)	60, 273, 481, 497
LweI	GCATC	1 cut(s)	186
MaeIII	GTNAC	3 cut(s)	37, 415, 742
MalI	GATC	5 cut(s)	29, 119, 211, 233, 680
MboI	GATC	5 cut(s)	27, 117, 209, 231, 678
MboII	GAAGA	9 cut(s)	22, 112, 146, 196, 241, 331, 528, 641, 761
MhlI	GDGCHC	3 cut(s)	36, 505, 763
MluCI	AATT	3 cut(s)	474, 556, 700
MlyI	GAGTC	2 cut(s)	253, 760
MmeI	TCCRAC	1 cut(s)	81
MnlI	CCTC	3 cut(s)	134, 373, 578
MseI	TTAA	3 cut(s)	309, 473, 507
MslI	CAYNNNNRTG	1 cut(s)	756
MspA1I	CMGCKG	1 cut(s)	494
MspCI	CTTAAG	1 cut(s)	506
MspI	CCGG	2 cut(s)	214, 299
MspR9I	CCNGG	5 cut(s)	46, 214, 215, 314, 499
MvaI	CCWGG	3 cut(s)	46, 314, 499
MvnI	CGCG	1 cut(s)	176
MwoI	GCNNNNNNNGC	8 cut(s)	102, 295, 323, 353, 491, 494, 500, 590
NciI	CCSGG	2 cut(s)	214, 215
NdeI	CATATG	1 cut(s)	683
NdeII	GATC	5 cut(s)	27, 117, 209, 231, 678
NlaIII	CATG	3 cut(s)	133, 142, 628
NlaIV	GGNNCC	2 cut(s)	192, 585
NmuCI	GTSAC	2 cut(s)	37, 742
OliI	CACNNNNGTG	1 cut(s)	756
PciSI	GCTCTTC	1 cut(s)	5
PkrI	GCNGC	5 cut(s)	17, 75, 288, 487, 496
Ple19I	CGATCG	1 cut(s)	30
PleI	GAGTC	2 cut(s)	252, 760
PpsI	GAGTC	2 cut(s)	252, 760
Psp6I	CCWGG	3 cut(s)	44, 312, 497
PspGI	CCWGG	3 cut(s)	44, 312, 497
PspN4I	GGNNCC	2 cut(s)	192, 585
PstNI	CAGNNNCTG	1 cut(s)	226
PvuI	CGATCG	1 cut(s)	30
PvuII	CAGCTG	1 cut(s)	494
RsaI	GTAC	3 cut(s)	50, 86, 113
RsaNI	GTAC	3 cut(s)	49, 85, 112
RseI	CAYNNNNRTG	1 cut(s)	756
SapI	GCTCTTC	1 cut(s)	5
SaqAI	TTAA	3 cut(s)	309, 473, 507
SatI	GCNGC	5 cut(s)	16, 74, 287, 486, 495
Sau3AI	GATC	5 cut(s)	27, 117, 209, 231, 678
ScaI	AGTACT	1 cut(s)	86
SchI	GAGTC	2 cut(s)	253, 760
ScrFI	CCNGG	5 cut(s)	46, 214, 215, 314, 499
SduI	GDGCHC	3 cut(s)	36, 505, 763
SetI	ASST	7 cut(s)	164, 399, 496, 555, 570, 658, 777
SfaNI	GCATC	1 cut(s)	186
SfcI	CTRYAG	1 cut(s)	318
SmaI	CCCGGG	1 cut(s)	215
SmiMI	CAYNNNNRTG	1 cut(s)	756
SmlI	CTYRAG	1 cut(s)	506
SmoI	CTYRAG	1 cut(s)	506
Sse9I	AATT	3 cut(s)	474, 556, 700
SsiI	CCGC	2 cut(s)	16, 289
StyD4I	CCNGG	5 cut(s)	44, 212, 213, 312, 497
TaqI	TCGA	2 cut(s)	208, 560
TasI	AATT	3 cut(s)	474, 556, 700
TatI	WGTACW	1 cut(s)	84
TauI	GCSGC	1 cut(s)	18
Tru1I	TTAA	3 cut(s)	309, 473, 507
Tru9I	TTAA	3 cut(s)	309, 473, 507
TscAI	CASTG	4 cut(s)	349, 442, 519, 763
TseFI	GTSAC	2 cut(s)	37, 742
TseI	GCWGC	4 cut(s)	73, 286, 485, 494
Tsp45I	GTSAC	2 cut(s)	37, 742
TspDTI	ATGAA	3 cut(s)	17, 197, 578
TspMI	CCCGGG	1 cut(s)	213
TspRI	CASTG	4 cut(s)	349, 442, 519, 763
Vha464I	CTTAAG	1 cut(s)	506
XapI	RAATTY	1 cut(s)	556
XmaI	CCCGGG	1 cut(s)	213
ZrmI	AGTACT	1 cut(s)	86

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.