Rroxscaffold_1G00013340

Sugar phosphate phosphate translocator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000810
Physical Location & Seq
Reverse (-)
16399224 .. 16401406
2183 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00013340.1

Sequence Viewer

Length: 822 bp
ATGTCGACGAGCCGGGTCTTCACCGTGGGGTTGATAACGGCATGGTACTCATCCAATATAGGAGTTCTGCTATTGAACAAGTTCCTCCTAACCAATTACGGGTTCAAGTACCCGATCTTCCTGACCCTCTGCCACATGCTGGCGTGCTCTTTCTTAAGCTACGTTGCCATTTCGTGGCTCAAGGTGGTTCCCATGCAGAGCATCAGGTCGCGGGTTCAGTTCGTCAAGATATCGTCGCTCGGTTTCATCTTCTGTTTGTCGGTCGTCGGCGGGAACATCTCGCTCCGGTATCTGGCGGTGTCGTTCAACCAGGCGGTGGGCGCCACGACGCCGTTTTTCACGGCGGTTTTTGCGTACTTGATGACTCTGAAGAAGGAGGGCTGGCTCACGTACCTTACTCTTGTACCTGTCGTCACCGGCGTTATTATTGCCAGCGGGGTAAGAACGGAAAAGCTAAATTCTATGAACCTCCTCATGTACATGGGGCCTGTAGCTTGCGTAATCCTTCTGCCTGCGGCACTTTGGATGGAACAAGATGTGGTTGCGATAACCATTGCTCTTGCAAGAGATGATGTGAGCATCATATGGTATCTAATATTCAATTCTGCCCTTGCATACTTTGTGAATTTGACCAACTTCTTGGTAACCAAGCACACAAGTCCCCTGACTCTCCAGGTTTTGGGAAATGCAAAAGGAGCTGTTGCTGTGGTTGTTTCAATTTTGATATTCAGAAATCCAGTATCAGTAACTGGGATGCTGGGTTACGGTCTCACAGTAACAGGAGTAATCCTCTACAGTGAAGCCAAGAAAAGGGGTAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPT

Protein Analysis

273

Amino Acids

29.97

Weight (kDa)

9.77

Isoelectric Point (pI)

36.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPT PF03151 11 - 145 1.2e-20 Triose-phosphate Transporter family
TPT PF03151 150 - 266 1.3e-15 Triose-phosphate Transporter family
UAA PF08449 156 - 268 3.8e-07 UAA transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 320
AccB7I CCANNNNNTGG 4 cut(s) 139, 174, 316, 679
AccI GTMKAC 1 cut(s) 5
AccII CGCG 1 cut(s) 211
AciI CCGC 7 cut(s) 211, 270, 296, 314, 344, 435, 515
AcsI RAATTY 2 cut(s) 457, 625
AcuI CTGAAG 1 cut(s) 389
AcyI GRCGYC 2 cut(s) 321, 329
AfaI GTAC 6 cut(s) 47, 110, 356, 392, 405, 479
AfiI CCNNNNNNNGG 7 cut(s) 99, 139, 174, 292, 316, 679, 810
AflII CTTAAG 1 cut(s) 154
AgsI TTSAA 5 cut(s) 76, 106, 307, 601, 717
AjnI CCWGG 2 cut(s) 309, 672
AjuI GAANNNNNNNTTGG 2 cut(s) 86, 118
AluBI AGCT 4 cut(s) 159, 454, 494, 698
AluI AGCT 4 cut(s) 159, 454, 494, 698
Alw21I GWGCWC 1 cut(s) 149
Alw26I GTCTC 1 cut(s) 773
AlwNI CAGNNNCTG 1 cut(s) 749
AoxI GGCC 1 cut(s) 485
ApoI RAATTY 2 cut(s) 457, 625
Asp700I GAANNNNTTC 1 cut(s) 80
AspLEI GCGC 1 cut(s) 323
AspS9I GGNCC 1 cut(s) 485
AsuC2I CCSGG 1 cut(s) 14
AsuHPI GGTGA 2 cut(s) 13, 406
BaeI ACNNNNGTAYC 2 cut(s) 387, 420
BanI GGYRCC 1 cut(s) 320
BarI GAAGNNNNNNTAC 2 cut(s) 101, 133
BbsI GAAGAC 1 cut(s) 10
Bbv12I GWGCWC 1 cut(s) 149
BccI CCATC 1 cut(s) 520
BceAI ACGGC 3 cut(s) 54, 316, 357
BciT130I CCWGG 2 cut(s) 311, 674
BcnI CCSGG 1 cut(s) 14
BcoDI GTCTC 1 cut(s) 773
BfmI CTRYAG 2 cut(s) 489, 793
BfoI RGCGCY 1 cut(s) 324
BfrI CTTAAG 1 cut(s) 154
BisI GCNGC 1 cut(s) 516
BlsI GCNGC 1 cut(s) 517
Bme1390I CCNGG 3 cut(s) 14, 311, 674
BmgT120I GGNCC 1 cut(s) 485
BmiI GGNNCC 3 cut(s) 189, 322, 486
BmrFI CCNGG 3 cut(s) 14, 311, 674
BmrI ACTGGG 1 cut(s) 759
BmsI GCATC 3 cut(s) 210, 588, 744
BmuI ACTGGG 1 cut(s) 759
BpiI GAAGAC 1 cut(s) 10
BplI GAGNNNNNCTC 2 cut(s) 774, 806
BpmI CTGGAG 1 cut(s) 656
BpuEI CTTGAG 1 cut(s) 164
BpuMI CCSGG 1 cut(s) 14
BsaAI YACGTR 1 cut(s) 390
BsaHI GRCGYC 2 cut(s) 321, 329
BsaI GGTCTC 1 cut(s) 773
BsaJI CCNNGG 1 cut(s) 24
BsaWI WCCGGW 1 cut(s) 285
Bsc4I CCNNNNNNNGG 7 cut(s) 99, 139, 174, 292, 316, 679, 810
Bse118I RCCGGY 1 cut(s) 416
Bse1I ACTGG 2 cut(s) 737, 754
Bse3DI GCAATG 1 cut(s) 552
BseBI CCWGG 2 cut(s) 311, 674
BseDI CCNNGG 1 cut(s) 24
BseGI GGATG 3 cut(s) 50, 531, 759
BseLI CCNNNNNNNGG 7 cut(s) 99, 139, 174, 292, 316, 679, 810
BseMI GCAATG 1 cut(s) 552
BseNI ACTGG 2 cut(s) 737, 754
BseRI GAGGAG 1 cut(s) 461
BseYI CCCAGC 1 cut(s) 757
Bsh1236I CGCG 1 cut(s) 211
Bsh1285I CGRYCG 1 cut(s) 264
BshFI GGCC 1 cut(s) 487
BshNI GGYRCC 1 cut(s) 320
BsiEI CGRYCG 1 cut(s) 264
BsiHKAI GWGCWC 1 cut(s) 149
BsiSI CCGG 3 cut(s) 13, 286, 417
BslFI GGGAC 1 cut(s) 645
BslI CCNNNNNNNGG 7 cut(s) 99, 139, 174, 292, 316, 679, 810
BsmAI GTCTC 1 cut(s) 773
BsmFI GGGAC 1 cut(s) 645
BsnI GGCC 1 cut(s) 487
Bso31I GGTCTC 1 cut(s) 773
Bsp1286I GDGCHC 1 cut(s) 149
Bsp1407I TGTACA 1 cut(s) 477
Bsp143I GATC 1 cut(s) 114
BspACI CCGC 7 cut(s) 211, 270, 296, 314, 344, 435, 515
BspANI GGCC 1 cut(s) 487
BspFNI CGCG 1 cut(s) 211
BspLI GGNNCC 3 cut(s) 189, 322, 486
BspT107I GGYRCC 1 cut(s) 320
BspTI CTTAAG 1 cut(s) 154
BspTNI GGTCTC 1 cut(s) 773
BsrDI GCAATG 1 cut(s) 552
BsrFI RCCGGY 1 cut(s) 416
BsrGI TGTACA 1 cut(s) 477
BsrI ACTGG 2 cut(s) 737, 754
BssAI RCCGGY 1 cut(s) 416
BssECI CCNNGG 1 cut(s) 24
BssMI GATC 1 cut(s) 114
BssNI GRCGYC 2 cut(s) 321, 329
Bst2UI CCWGG 2 cut(s) 311, 674
Bst4CI ACNGT 4 cut(s) 25, 767, 775, 797
BstACI GRCGYC 2 cut(s) 321, 329
BstAFI CTTAAG 1 cut(s) 154
BstAUI TGTACA 1 cut(s) 477
BstBAI YACGTR 1 cut(s) 390
BstC8I GCNNGC 6 cut(s) 141, 145, 383, 433, 496, 513
BstDSI CCRYGG 1 cut(s) 24
BstEII GGTNACC 1 cut(s) 643
BstF5I GGATG 3 cut(s) 50, 531, 759
BstFNI CGCG 1 cut(s) 211
BstH2I RGCGCY 1 cut(s) 324
BstHHI GCGC 1 cut(s) 323
BstKTI GATC 1 cut(s) 117
BstMAI GTCTC 1 cut(s) 773
BstMBI GATC 1 cut(s) 114
BstMCI CGRYCG 1 cut(s) 264
BstMWI GCNNNNNNNGC 3 cut(s) 320, 350, 695
BstNI CCWGG 2 cut(s) 311, 674
BstNSI RCATGY 1 cut(s) 139
BstPI GGTNACC 1 cut(s) 643
BstSCI CCNGG 3 cut(s) 12, 309, 672
BstSFI CTRYAG 2 cut(s) 489, 793
BstUI CGCG 1 cut(s) 211
BstV2I GAAGAC 1 cut(s) 10
BstXI CCANNNNNNTGG 1 cut(s) 640
BsuRI GGCC 1 cut(s) 487
BtgI CCRYGG 1 cut(s) 24
BtsCI GGATG 3 cut(s) 50, 531, 759
BtsIMutI CAGTG 1 cut(s) 802
Cac8I GCNNGC 6 cut(s) 141, 145, 383, 433, 496, 513
CaiI CAGNNNCTG 1 cut(s) 749
CfoI GCGC 1 cut(s) 323
Cfr10I RCCGGY 1 cut(s) 416
Cfr13I GGNCC 1 cut(s) 485
CseI GACGC 1 cut(s) 337
Csp6I GTAC 6 cut(s) 46, 109, 355, 391, 404, 478
CviAII CATG 5 cut(s) 42, 136, 193, 475, 481
CviQI GTAC 6 cut(s) 46, 109, 355, 391, 404, 478
DinI GGCGCC 1 cut(s) 322
DpnI GATC 1 cut(s) 116
DpnII GATC 1 cut(s) 114
Eco31I GGTCTC 1 cut(s) 773
Eco32I GATATC 1 cut(s) 231
Eco57I CTGAAG 1 cut(s) 389
Eco91I GGTNACC 1 cut(s) 643
EcoO109I RGGNCCY 1 cut(s) 485
EcoO65I GGTNACC 1 cut(s) 643
EcoRII CCWGG 2 cut(s) 309, 672
EcoRV GATATC 1 cut(s) 231
EgeI GGCGCC 1 cut(s) 322
EheI GGCGCC 1 cut(s) 322
FaeI CATG 5 cut(s) 45, 139, 196, 478, 484
FaqI GGGAC 1 cut(s) 645
FatI CATG 5 cut(s) 41, 135, 192, 474, 480
FauI CCCGC 3 cut(s) 204, 263, 428
FauNDI CATATG 1 cut(s) 584
FblI GTMKAC 1 cut(s) 5
Fnu4HI GCNGC 1 cut(s) 516
FokI GGATG 3 cut(s) 37, 538, 766
Fsp4HI GCNGC 1 cut(s) 516
GlaI GCGC 1 cut(s) 322
GluI GCNGC 1 cut(s) 516
GsaI CCCAGC 1 cut(s) 761
GsuI CTGGAG 1 cut(s) 656
HaeII RGCGCY 1 cut(s) 324
HaeIII GGCC 1 cut(s) 487
HapII CCGG 3 cut(s) 13, 286, 417
HgaI GACGC 1 cut(s) 337
HhaI GCGC 1 cut(s) 323
Hin1I GRCGYC 2 cut(s) 321, 329
Hin1II CATG 5 cut(s) 45, 139, 196, 478, 484
Hin6I GCGC 1 cut(s) 321
HinP1I GCGC 1 cut(s) 321
HincII GTYRAC 1 cut(s) 6
HindII GTYRAC 1 cut(s) 6
HinfI GANTC 2 cut(s) 364, 667
HpaII CCGG 3 cut(s) 13, 286, 417
HphI GGTGA 2 cut(s) 13, 406
Hpy166II GTNNAC 1 cut(s) 6
Hpy188I TCNGA 2 cut(s) 369, 731
Hpy188III TCNNGA 2 cut(s) 121, 226
Hpy8I GTNNAC 1 cut(s) 6
Hpy99I CGWCG 4 cut(s) 10, 238, 269, 331
HpyAV CCTTC 2 cut(s) 367, 515
HpyCH4III ACNGT 4 cut(s) 25, 767, 775, 797
HpyCH4IV ACGT 2 cut(s) 162, 389
HpyCH4V TGCA 4 cut(s) 196, 563, 614, 689
HpyF10VI GCNNNNNNNGC 3 cut(s) 320, 350, 695
HpySE526I ACGT 2 cut(s) 162, 389
Hsp92I GRCGYC 2 cut(s) 321, 329
Hsp92II CATG 5 cut(s) 45, 139, 196, 478, 484
HspAI GCGC 1 cut(s) 321
KasI GGCGCC 1 cut(s) 320
Kzo9I GATC 1 cut(s) 114
LmnI GCTCC 2 cut(s) 288, 695
LweI GCATC 3 cut(s) 210, 588, 744
MaeII ACGT 2 cut(s) 162, 389
MaeIII GTNAC 5 cut(s) 412, 643, 745, 761, 775
MalI GATC 1 cut(s) 116
MboI GATC 1 cut(s) 114
MboII GAAGA 4 cut(s) 10, 109, 241, 382
MhlI GDGCHC 1 cut(s) 149
MluCI AATT 5 cut(s) 94, 457, 601, 625, 717
Mly113I GGCGCC 1 cut(s) 321
MlyI GAGTC 2 cut(s) 358, 661
MnlI CCTC 6 cut(s) 95, 137, 370, 479, 482, 800
MroXI GAANNNNTTC 1 cut(s) 80
MseI TTAA 1 cut(s) 155
MslI CAYNNNNRTG 1 cut(s) 479
MspA1I CMGCKG 1 cut(s) 435
MspCI CTTAAG 1 cut(s) 154
MspI CCGG 3 cut(s) 13, 286, 417
MspR9I CCNGG 3 cut(s) 14, 311, 674
MvaI CCWGG 2 cut(s) 311, 674
MvnI CGCG 1 cut(s) 211
MwoI GCNNNNNNNGC 3 cut(s) 320, 350, 695
NarI GGCGCC 1 cut(s) 321
NciI CCSGG 1 cut(s) 14
NdeI CATATG 1 cut(s) 584
NdeII GATC 1 cut(s) 114
NlaIII CATG 5 cut(s) 45, 139, 196, 478, 484
NlaIV GGNNCC 3 cut(s) 189, 322, 486
NmuCI GTSAC 1 cut(s) 412
NspI RCATGY 1 cut(s) 139
PcsI WCGNNNNNNNCGW 1 cut(s) 417
PdmI GAANNNNTTC 1 cut(s) 80
PflMI CCANNNNNTGG 4 cut(s) 139, 174, 316, 679
PkrI GCNGC 1 cut(s) 517
PleI GAGTC 2 cut(s) 358, 661
PluTI GGCGCC 1 cut(s) 324
PpsI GAGTC 2 cut(s) 358, 661
Ppu21I YACGTR 1 cut(s) 390
Psp6I CCWGG 2 cut(s) 309, 672
PspEI GGTNACC 1 cut(s) 643
PspFI CCCAGC 1 cut(s) 757
PspGI CCWGG 2 cut(s) 309, 672
PspN4I GGNNCC 3 cut(s) 189, 322, 486
PspPI GGNCC 1 cut(s) 485
PstNI CAGNNNCTG 1 cut(s) 749
RsaI GTAC 6 cut(s) 47, 110, 356, 392, 405, 479
RsaNI GTAC 6 cut(s) 46, 109, 355, 391, 404, 478
RseI CAYNNNNRTG 1 cut(s) 479
SalI GTCGAC 1 cut(s) 4
SaqAI TTAA 1 cut(s) 155
SatI GCNGC 1 cut(s) 516
Sau3AI GATC 1 cut(s) 114
Sau96I GGNCC 1 cut(s) 485
SchI GAGTC 2 cut(s) 358, 661
ScrFI CCNGG 3 cut(s) 14, 311, 674
SduI GDGCHC 1 cut(s) 149
SfaNI GCATC 3 cut(s) 210, 588, 744
SfcI CTRYAG 2 cut(s) 489, 793
SfoI GGCGCC 1 cut(s) 322
SgrAI CRCCGGYG 1 cut(s) 416
SmiMI CAYNNNNRTG 1 cut(s) 479
SmlI CTYRAG 2 cut(s) 154, 179
SmoI CTYRAG 2 cut(s) 154, 179
Sse9I AATT 5 cut(s) 94, 457, 601, 625, 717
SsiI CCGC 7 cut(s) 211, 270, 296, 314, 344, 435, 515
SspDI GGCGCC 1 cut(s) 320
SspI AATATT 1 cut(s) 597
StyD4I CCNGG 3 cut(s) 12, 309, 672
TaaI ACNGT 4 cut(s) 25, 767, 775, 797
TaiI ACGT 2 cut(s) 165, 392
TaqI TCGA 1 cut(s) 5
TaqII GACCGA 1 cut(s) 250
TasI AATT 5 cut(s) 94, 457, 601, 625, 717
TatI WGTACW 1 cut(s) 477
TauI GCSGC 1 cut(s) 518
Tru1I TTAA 1 cut(s) 155
Tru9I TTAA 1 cut(s) 155
TscAI CASTG 1 cut(s) 802
TseFI GTSAC 1 cut(s) 412
Tsp45I GTSAC 1 cut(s) 412
TspDTI ATGAA 2 cut(s) 235, 479
TspGWI ACGGA 1 cut(s) 461
TspRI CASTG 1 cut(s) 802
Van91I CCANNNNNTGG 4 cut(s) 139, 174, 316, 679
Vha464I CTTAAG 1 cut(s) 154
XapI RAATTY 2 cut(s) 457, 625
XceI RCATGY 1 cut(s) 139
XmiI GTMKAC 1 cut(s) 5
XmnI GAANNNNTTC 1 cut(s) 80
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.