Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0000810

Physical Location & Seq

Genomic Coordinates Forward (+)

60869958 .. 60879223

Gene Structure 9266 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG459800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGCACCTTCAGAATTCATTGAAATTTTTTTTCTACTCATTTATCAGGGCAAGTGTTCCAAAGTTGGATCTAGACTCAACCTTTGAACAGAAGAATGATATCGCCAAAGCTGTGGAAGAAGAACTTGAAAAGGGTGAGTCGAGTTTTCACTTCTTTGGATTTGTTATGTGCATTAGTGCAACTGCTGCAAGGGCATTTAAATCTGTTCTTCAGGATGGAGGGTTCTTGAAAGAGGTGGCGCTAGTTACAAGCAGTGCTAAGTATTATGATCACATCACTTCGCGGAATTGCACTCCTGAGGAAGCACGAGATAAGGTGTTTGCGATGACAATCAACCCGCTGCATAACATGCATTTGGTGAAGAAGTCCAGCGAGCTAGAAAATTTGCAGAGCAAGAAGGATACTCTGCAAAAGAAATTGAATACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0005911 GO:0009506 GO:0009507 GO:0009536 GO:0016020 GO:0019899 GO:0019900 GO:0019901 GO:0030054 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043424 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0055044 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Band_7

Protein Analysis

142

Amino Acids

16.18

Weight (kDa)

7.79

Isoelectric Point (pI)

56.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000810)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11320 AT5G05820
fragaria_vesca	FvH4_3g37700 FvH4_6g12230 FvH4_6g12230 FvH4_7g23830 FvH4_7g23830 FvH4_7g23830 FvH4_7g23830 FvH4_7g23830
malus_domestica	MD01G1145600.v1.1 MD03G1078400.v1.1 MD04G1144900.v1.1 MD07G1212700.v1.1 MD12G1158900.v1.1
prunus_persica	Prupe.2G244900_v2.0.a1 Prupe.2G244900_v2.0.a1 Prupe.2G244900_v2.0.a1 Prupe.6G063400_v2.0.a1 Prupe.6G269300_v2.0.a1 Prupe.6G269300_v2.0.a1
pyrus_communis	pycom01g16510 pycom03g06280 pycom07g19540 pycom12g15080
rosa_chinensis	RchiOBHm_Chr1g0369201 RchiOBHm_Chr3g0464031 RchiOBHm_Chr5g0067971 RchiOBHm_Chr7g0183791
rosa_laevigata	RLG00000024727 RLG00000027147 RLG00000035948
rosa_multiflora	Rmu_co8032292.1_g000001 Rmu_sc0000435.1_g000038 Rmu_sc0001203.1_g000001 Rmu_sc0004616.1_g000004 Rmu_sc0005807.1_g000004 Rmu_sc0019331.1_g000001 Rmu_sc0028685.1_g000001
rosa_roxburghii	Rroxscaffold_1G00012630 Rroxscaffold_1G00013340 Rroxscaffold_4G00287870 Rroxscaffold_4G00291440 Rroxscaffold_5G00365160 Rroxscaffold_6G00416050
rosa_rugosa	Rorug01G0348800 Rorug01G0348800 Rorug01G0348800 Rorug01G0348900 Rorug03G0070200 Rorug04G0183800 Rorug05G0386900
rosa_samantha	Rh1AG355800 Rh1BG319400 Rh1CG333400 Rh1DG350100 Rh3BG131300 Rh3CG133600 Rh3DG132600 Rh5AG445800 Rh5AG536100 Rh5BG463300 Rh5CG485200 Rh5DG477300 Rh7CG459800
rosa_wichuraiana	Rw1G031400 Rw3G010730 Rw5G041630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	283
AciI	CCGC	2 cut(s)	283, 338
AclWI	GGATC	1 cut(s)	75
AcsI	RAATTY	3 cut(s)	13, 23, 382
AcuI	CTGAAG	1 cut(s)	194
AgsI	TTSAA	5 cut(s)	22, 86, 128, 229, 421
AloI	GAACNNNNNNTCC	2 cut(s)	206, 238
AluBI	AGCT	2 cut(s)	110, 376
AluI	AGCT	2 cut(s)	110, 376
AlwI	GGATC	1 cut(s)	75
ApeKI	GCWGC	2 cut(s)	185, 340
ApoI	RAATTY	3 cut(s)	13, 23, 382
ArsI	GACNNNNNNTTYG	2 cut(s)	65, 97
AspLEI	GCGC	1 cut(s)	241
AsuHPI	GGTGA	2 cut(s)	146, 370
AxyI	CCTNAGG	1 cut(s)	297
BauI	CACGAG	1 cut(s)	306
BbvI	GCAGC	2 cut(s)	172, 327
BccI	CCATC	1 cut(s)	209
BciVI	GTATCC	1 cut(s)	394
BclI	TGATCA	1 cut(s)	268
BfaI	CTAG	3 cut(s)	71, 242, 377
BfoI	RGCGCY	1 cut(s)	242
BfuI	GTATCC	1 cut(s)	394
BisI	GCNGC	2 cut(s)	186, 341
BlsI	GCNGC	2 cut(s)	187, 342
BsaBI	GATNNNNATC	1 cut(s)	329
Bse21I	CCTNAGG	1 cut(s)	297
Bse8I	GATNNNNATC	1 cut(s)	329
BseGI	GGATG	1 cut(s)	220
BseJI	GATNNNNATC	1 cut(s)	329
BseMII	CTCAG	1 cut(s)	288
BseXI	GCAGC	2 cut(s)	172, 327
Bsh1236I	CGCG	1 cut(s)	283
Bsp143I	GATC	2 cut(s)	67, 268
BspACI	CCGC	2 cut(s)	283, 338
BspCNI	CTCAG	1 cut(s)	289
BspFNI	CGCG	1 cut(s)	283
BspPI	GGATC	1 cut(s)	75
BssMI	GATC	2 cut(s)	67, 268
BssSI	CACGAG	1 cut(s)	306
Bst2BI	CACGAG	1 cut(s)	306
BstAPI	GCANNNNNTGC	2 cut(s)	185, 349
BstC8I	GCNNGC	1 cut(s)	374
BstDEI	CTNAG	3 cut(s)	258, 297, 426
BstF5I	GGATG	1 cut(s)	220
BstFNI	CGCG	1 cut(s)	283
BstH2I	RGCGCY	1 cut(s)	242
BstHHI	GCGC	1 cut(s)	241
BstKTI	GATC	2 cut(s)	70, 271
BstMBI	GATC	2 cut(s)	67, 268
BstMWI	GCNNNNNNNGC	3 cut(s)	185, 191, 349
BstNSI	RCATGY	1 cut(s)	352
BstUI	CGCG	1 cut(s)	283
BstV1I	GCAGC	2 cut(s)	172, 327
BstX2I	RGATCY	1 cut(s)	67
BstXI	CCANNNNNNTGG	1 cut(s)	112
BstYI	RGATCY	1 cut(s)	67
Bsu36I	CCTNAGG	1 cut(s)	297
BsuI	GTATCC	1 cut(s)	394
BtgZI	GCGATG	1 cut(s)	338
BtsCI	GGATG	1 cut(s)	220
BtsI	GCAGTG	1 cut(s)	259
BtsIMutI	CAGTG	1 cut(s)	259
Cac8I	GCNNGC	1 cut(s)	374
CfoI	GCGC	1 cut(s)	241
CviAII	CATG	1 cut(s)	349
CviJI	RGCY	2 cut(s)	110, 376
CviKI_1	RGCY	2 cut(s)	110, 376
DdeI	CTNAG	3 cut(s)	258, 297, 426
DpnI	GATC	2 cut(s)	69, 270
DpnII	GATC	2 cut(s)	67, 268
DraI	TTTAAA	1 cut(s)	199
Eco32I	GATATC	1 cut(s)	100
Eco57I	CTGAAG	1 cut(s)	194
Eco81I	CCTNAGG	1 cut(s)	297
EcoRI	GAATTC	1 cut(s)	13
EcoRV	GATATC	1 cut(s)	100
EcoT22I	ATGCAT	1 cut(s)	354
FaeI	CATG	1 cut(s)	352
FaiI	YATR	4 cut(s)	167, 267, 345, 350
FalI	AAGNNNNNCTT	2 cut(s)	108, 140
FatI	CATG	1 cut(s)	348
FauI	CCCGC	1 cut(s)	345
FbaI	TGATCA	1 cut(s)	268
Fnu4HI	GCNGC	2 cut(s)	186, 341
FokI	GGATG	1 cut(s)	227
Fsp4HI	GCNGC	2 cut(s)	186, 341
FspBI	CTAG	3 cut(s)	71, 242, 377
GlaI	GCGC	1 cut(s)	240
GluI	GCNGC	2 cut(s)	186, 341
HaeII	RGCGCY	1 cut(s)	242
HhaI	GCGC	1 cut(s)	241
Hin1II	CATG	1 cut(s)	352
Hin6I	GCGC	1 cut(s)	239
HinP1I	GCGC	1 cut(s)	239
HinfI	GANTC	2 cut(s)	74, 137
HphI	GGTGA	2 cut(s)	146, 370
Hpy188I	TCNGA	1 cut(s)	12
Hpy188III	TCNNGA	4 cut(s)	71, 212, 226, 296
HpyAV	CCTTC	2 cut(s)	17, 391
HpyCH4V	TGCA	9 cut(s)	4, 171, 179, 188, 291, 343, 352, 388, 409
HpyF10VI	GCNNNNNNNGC	3 cut(s)	185, 191, 349
HpyF3I	CTNAG	3 cut(s)	258, 297, 426
Hsp92II	CATG	1 cut(s)	352
HspAI	GCGC	1 cut(s)	239
Ksp22I	TGATCA	1 cut(s)	268
Kzo9I	GATC	2 cut(s)	67, 268
LpnPI	CCDG	4 cut(s)	31, 197, 309, 382
Lsp1109I	GCAGC	2 cut(s)	172, 327
MaeI	CTAG	3 cut(s)	71, 242, 377
MaeIII	GTNAC	1 cut(s)	244
MalI	GATC	2 cut(s)	69, 270
MboI	GATC	2 cut(s)	67, 268
MboII	GAAGA	5 cut(s)	103, 128, 131, 200, 373
MflI	RGATCY	1 cut(s)	67
MluCI	AATT	5 cut(s)	13, 23, 286, 382, 416
MlyI	GAGTC	2 cut(s)	68, 146
MmeI	TCCRAC	1 cut(s)	45
MnlI	CCTC	3 cut(s)	212, 226, 292
Mph1103I	ATGCAT	1 cut(s)	354
MseI	TTAA	1 cut(s)	198
MspA1I	CMGCKG	1 cut(s)	340
MvnI	CGCG	1 cut(s)	283
MwoI	GCNNNNNNNGC	3 cut(s)	185, 191, 349
NdeII	GATC	2 cut(s)	67, 268
NlaIII	CATG	1 cut(s)	352
NsiI	ATGCAT	1 cut(s)	354
NspI	RCATGY	1 cut(s)	352
PkrI	GCNGC	2 cut(s)	187, 342
PleI	GAGTC	2 cut(s)	68, 145
PpsI	GAGTC	2 cut(s)	68, 145
PsuI	RGATCY	1 cut(s)	67
SaqAI	TTAA	1 cut(s)	198
SatI	GCNGC	2 cut(s)	186, 341
Sau3AI	GATC	2 cut(s)	67, 268
SchI	GAGTC	2 cut(s)	68, 146
SetI	ASST	6 cut(s)	9, 83, 112, 237, 318, 378
SmiI	ATTTAAAT	1 cut(s)	199
Sse9I	AATT	5 cut(s)	13, 23, 286, 382, 416
SsiI	CCGC	2 cut(s)	283, 338
SspMI	CTAG	3 cut(s)	71, 242, 377
SwaI	ATTTAAAT	1 cut(s)	199
TaqI	TCGA	1 cut(s)	140
TasI	AATT	5 cut(s)	13, 23, 286, 382, 416
Tru1I	TTAA	1 cut(s)	198
Tru9I	TTAA	1 cut(s)	198
TscAI	CASTG	1 cut(s)	259
TseI	GCWGC	2 cut(s)	185, 340
TspDTI	ATGAA	1 cut(s)	6
TspRI	CASTG	1 cut(s)	259
XapI	RAATTY	3 cut(s)	13, 23, 382
XbaI	TCTAGA	1 cut(s)	70
XceI	RCATGY	1 cut(s)	352
XspI	CTAG	3 cut(s)	71, 242, 377
Zsp2I	ATGCAT	1 cut(s)	354

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.