MD04G1144900.v1.1

Sugar phosphate phosphate translocator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
OG0000810
Physical Location & Seq
Forward (+)
23363142 .. 23365439
2298 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1144900.v1.1.491

Sequence Viewer

Length: 933 bp
ATGTCGGCGGCGATCCAATGGACGACGGTCGGGATGGTCGCCGCCTGGTACGGCTCCAACATCGGTGTCCTGCTTCTGAACAAGTACCTGCTCACGAACTACGGCTTCCGGTTTCCAATTTTTCTGACGCTCTGCCACATGACGGCTTGTTCGGTGCTCAGCTACGTCGCCATAGCTGTGATGAAGGTGGCCCCACTGCAGAGCGTGAAGTCAAAGGTTCAGTTCGCCAAGATCGCCGGGCTCAGTGTCTTTTTCTGCTTCTCCGTCGTTTGCGGTAACGTATCGCTCAAGTACCTTCCCGTATCGTTTAATCAGGCCGTCGGCGCCACCACCCCCTTTTTTACCGCCGTTTTCTCGTTTTTGATCATCAAGAAGAGGGAGGCGTCGCTTACTTATGCCGCACTCATGCCTGTTGTTGCAGGTGTCATCGTTGCTAGTGGGGGTGAACCAAGCTTCCATCTTTTCGGGTTTGTTATGTGTATTACAGCTACAGCTGCAAGGGCATTCAAATCGGTGCTTCAAGAAATTTTGCTTTCCTCTGACGGGGAAAAATTGAACTCTATGAACCTGCTGTTGTACATGGCGCCAATGGCGGTGGCGTTCTTGCTTCCTGCAACCCTGTTGATGGAGGAAAATGTGGTCGGAATCACAATTGAACTTGCTCGAAAAGATATCAAACTTATTTGGTACCTCTTCTTCAATTCTTCCTTAGCGTATTTCGTCAACTTGACCAATTTCTTGGTCACCAAGCATACAAGTGCCTTGACCCTTCAGGTGCTAGGAAATGCAAAAGGGGCAGTTGCTGTGGTGGTTTCAATTTTGATATTTAAAAATCCAGTGTCATTCATAGGGATGGTGGGTTATGCACTCACTGTCCTTGGAGTTATTTTGTACAGTGAAGCCAAGAAGAGGTATACTTCAATCCATCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPT

Protein Analysis

311

Amino Acids

33.68

Weight (kDa)

9.52

Isoelectric Point (pI)

31.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPT PF03151 11 - 299 2.6e-48 Triose-phosphate Transporter family
UAA PF08449 26 - 301 4.4e-19 UAA transporter family
EamA PF00892 39 - 146 2.9e-06 EamA-like transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 410
Acc36I ACCTGC 3 cut(s) 96, 410, 576
Acc65I GGTACC 1 cut(s) 687
AccB1I GGYRCC 3 cut(s) 323, 583, 687
AccI GTMKAC 1 cut(s) 914
AciI CCGC 6 cut(s) 8, 42, 273, 345, 399, 593
AclWI GGATC 1 cut(s) 7
AcsI RAATTY 1 cut(s) 525
AcuI CTGAAG 1 cut(s) 755
AcyI GRCGYC 3 cut(s) 324, 383, 584
AfaI GTAC 6 cut(s) 50, 86, 293, 578, 689, 893
AfiI CCNNNNNNNGG 4 cut(s) 142, 543, 625, 909
AgsI TTSAA 7 cut(s) 508, 521, 556, 656, 700, 816, 921
AjnI CCWGG 1 cut(s) 44
AloI GAACNNNNNNTCC 2 cut(s) 438, 470
AluBI AGCT 5 cut(s) 162, 176, 453, 488, 494
AluI AGCT 5 cut(s) 162, 176, 453, 488, 494
Alw21I GWGCWC 1 cut(s) 159
AlwI GGATC 1 cut(s) 7
AlwNI CAGNNNCTG 1 cut(s) 803
AoxI GGCC 2 cut(s) 189, 315
ApeKI GCWGC 1 cut(s) 494
ApoI RAATTY 1 cut(s) 525
ArsI GACNNNNNNTTYG 2 cut(s) 133, 165
Asp718I GGTACC 1 cut(s) 687
AspLEI GCGC 2 cut(s) 326, 586
AspS9I GGNCC 1 cut(s) 190
AsuC2I CCSGG 1 cut(s) 238
AsuHPI GGTGA 2 cut(s) 455, 736
BanI GGYRCC 3 cut(s) 323, 583, 687
BanII GRGCYC 1 cut(s) 243
BarI GAAGNNNNNNTAC 2 cut(s) 680, 712
Bbv12I GWGCWC 1 cut(s) 159
BbvI GCAGC 1 cut(s) 481
BccI CCATC 4 cut(s) 28, 465, 619, 847
BceAI ACGGC 5 cut(s) 67, 118, 159, 302, 332
BcgI CGANNNNNNTGC 2 cut(s) 492, 526
BciT130I CCWGG 1 cut(s) 46
BclI TGATCA 1 cut(s) 363
BcnI CCSGG 1 cut(s) 238
BfaI CTAG 3 cut(s) 435, 779, 931
BfmI CTRYAG 2 cut(s) 197, 489
BfoI RGCGCY 2 cut(s) 327, 587
BfuAI ACCTGC 3 cut(s) 96, 410, 576
BisI GCNGC 4 cut(s) 9, 42, 399, 495
BlpI GCTNAGC 1 cut(s) 158
BlsI GCNGC 4 cut(s) 10, 43, 400, 496
Bme1390I CCNGG 2 cut(s) 46, 238
BmgT120I GGNCC 1 cut(s) 190
BmiI GGNNCC 5 cut(s) 55, 192, 325, 585, 689
BmrFI CCNGG 2 cut(s) 46, 238
BoxI GACNNNNGTC 1 cut(s) 26
Bpu10I CCTNAGC 1 cut(s) 709
Bpu1102I GCTNAGC 1 cut(s) 158
BpuEI CTTGAG 1 cut(s) 272
BpuMI CCSGG 1 cut(s) 238
BsaHI GRCGYC 3 cut(s) 324, 383, 584
BsaJI CCNNGG 1 cut(s) 877
BsaWI WCCGGW 1 cut(s) 108
Bsc4I CCNNNNNNNGG 4 cut(s) 142, 543, 625, 909
Bse1I ACTGG 1 cut(s) 836
BseBI CCWGG 1 cut(s) 46
BseDI CCNNGG 1 cut(s) 877
BseGI GGATG 2 cut(s) 39, 858
BseLI CCNNNNNNNGG 4 cut(s) 142, 543, 625, 909
BseMII CTCAG 2 cut(s) 172, 256
BseNI ACTGG 1 cut(s) 836
BseXI GCAGC 1 cut(s) 481
Bsh1285I CGRYCG 1 cut(s) 30
BshFI GGCC 2 cut(s) 191, 317
BshNI GGYRCC 3 cut(s) 323, 583, 687
BsiEI CGRYCG 1 cut(s) 30
BsiHKAI GWGCWC 1 cut(s) 159
BsiSI CCGG 2 cut(s) 109, 237
BslI CCNNNNNNNGG 4 cut(s) 142, 543, 625, 909
BsmI GAATGC 1 cut(s) 503
BsnI GGCC 2 cut(s) 191, 317
Bsp1286I GDGCHC 2 cut(s) 159, 243
Bsp1407I TGTACA 2 cut(s) 576, 891
Bsp143I GATC 3 cut(s) 12, 231, 363
Bsp1720I GCTNAGC 1 cut(s) 158
BspACI CCGC 6 cut(s) 8, 42, 273, 345, 399, 593
BspANI GGCC 2 cut(s) 191, 317
BspCNI CTCAG 2 cut(s) 171, 255
BspLI GGNNCC 5 cut(s) 55, 192, 325, 585, 689
BspMAI CTGCAG 1 cut(s) 201
BspMI ACCTGC 3 cut(s) 96, 410, 576
BspPI GGATC 1 cut(s) 7
BspT107I GGYRCC 3 cut(s) 323, 583, 687
BsrGI TGTACA 2 cut(s) 576, 891
BsrI ACTGG 1 cut(s) 836
BssECI CCNNGG 1 cut(s) 877
BssMI GATC 3 cut(s) 12, 231, 363
BssNAI GTATAC 1 cut(s) 915
BssNI GRCGYC 3 cut(s) 324, 383, 584
BssT1I CCWWGG 1 cut(s) 877
Bst1107I GTATAC 1 cut(s) 915
Bst2UI CCWGG 1 cut(s) 46
Bst4CI ACNGT 3 cut(s) 28, 874, 896
Bst6I CTCTTC 3 cut(s) 368, 698, 902
BstACI GRCGYC 3 cut(s) 324, 383, 584
BstAUI TGTACA 2 cut(s) 576, 891
BstDEI CTNAG 3 cut(s) 158, 242, 709
BstEII GGTNACC 1 cut(s) 742
BstF5I GGATG 2 cut(s) 39, 858
BstH2I RGCGCY 2 cut(s) 327, 587
BstHHI GCGC 2 cut(s) 326, 586
BstKTI GATC 3 cut(s) 15, 234, 366
BstMBI GATC 3 cut(s) 12, 231, 363
BstMCI CGRYCG 1 cut(s) 30
BstMWI GCNNNNNNNGC 6 cut(s) 233, 323, 494, 500, 590, 794
BstNI CCWGG 1 cut(s) 46
BstPAI GACNNNNGTC 1 cut(s) 26
BstPI GGTNACC 1 cut(s) 742
BstSCI CCNGG 2 cut(s) 44, 236
BstSFI CTRYAG 2 cut(s) 197, 489
BstV1I GCAGC 1 cut(s) 481
BstXI CCANNNNNNTGG 1 cut(s) 739
BstZ17I GTATAC 1 cut(s) 915
BsuRI GGCC 2 cut(s) 191, 317
BtsCI GGATG 2 cut(s) 39, 858
BtsI GCAGTG 1 cut(s) 194
BtsIMutI CAGTG 5 cut(s) 194, 250, 843, 870, 901
BveI ACCTGC 3 cut(s) 96, 410, 576
CaiI CAGNNNCTG 1 cut(s) 803
CfoI GCGC 2 cut(s) 326, 586
Cfr13I GGNCC 1 cut(s) 190
CseI GACGC 2 cut(s) 136, 372
Csp6I GTAC 6 cut(s) 49, 85, 292, 577, 688, 892
CspCI CAANNNNNGTGG 2 cut(s) 576, 611
CviAII CATG 3 cut(s) 139, 406, 580
CviQI GTAC 6 cut(s) 49, 85, 292, 577, 688, 892
DdeI CTNAG 3 cut(s) 158, 242, 709
DinI GGCGCC 2 cut(s) 325, 585
DpnI GATC 3 cut(s) 14, 233, 365
DpnII GATC 3 cut(s) 12, 231, 363
DraI TTTAAA 1 cut(s) 829
Eam1104I CTCTTC 3 cut(s) 368, 698, 902
EarI CTCTTC 3 cut(s) 368, 698, 902
Eco130I CCWWGG 1 cut(s) 877
Eco24I GRGCYC 1 cut(s) 243
Eco32I GATATC 1 cut(s) 673
Eco57I CTGAAG 1 cut(s) 755
Eco91I GGTNACC 1 cut(s) 742
EcoO65I GGTNACC 1 cut(s) 742
EcoRII CCWGG 1 cut(s) 44
EcoRV GATATC 1 cut(s) 673
EcoT14I CCWWGG 1 cut(s) 877
EcoT38I GRGCYC 1 cut(s) 243
EgeI GGCGCC 2 cut(s) 325, 585
EheI GGCGCC 2 cut(s) 325, 585
ErhI CCWWGG 1 cut(s) 877
FaeI CATG 3 cut(s) 142, 409, 583
FatI CATG 3 cut(s) 138, 405, 579
FbaI TGATCA 1 cut(s) 363
FblI GTMKAC 1 cut(s) 914
Fnu4HI GCNGC 4 cut(s) 9, 42, 399, 495
FokI GGATG 2 cut(s) 46, 865
FriOI GRGCYC 1 cut(s) 243
Fsp4HI GCNGC 4 cut(s) 9, 42, 399, 495
FspBI CTAG 3 cut(s) 435, 779, 931
GlaI GCGC 2 cut(s) 325, 585
GluI GCNGC 4 cut(s) 9, 42, 399, 495
HaeII RGCGCY 2 cut(s) 327, 587
HaeIII GGCC 2 cut(s) 191, 317
HapII CCGG 2 cut(s) 109, 237
HgaI GACGC 2 cut(s) 136, 372
HhaI GCGC 2 cut(s) 326, 586
Hin1I GRCGYC 3 cut(s) 324, 383, 584
Hin1II CATG 3 cut(s) 142, 409, 583
Hin6I GCGC 2 cut(s) 324, 584
HinP1I GCGC 2 cut(s) 324, 584
HincII GTYRAC 1 cut(s) 724
HindII GTYRAC 1 cut(s) 724
HindIII AAGCTT 1 cut(s) 451
HinfI GANTC 1 cut(s) 645
HpaII CCGG 2 cut(s) 109, 237
HphI GGTGA 2 cut(s) 455, 736
Hpy166II GTNNAC 3 cut(s) 446, 724, 915
Hpy188I TCNGA 4 cut(s) 78, 126, 541, 644
Hpy188III TCNNGA 4 cut(s) 31, 94, 370, 521
Hpy8I GTNNAC 3 cut(s) 446, 724, 915
Hpy99I CGWCG 5 cut(s) 28, 170, 269, 323, 388
HpyAV CCTTC 3 cut(s) 178, 305, 779
HpyCH4III ACNGT 3 cut(s) 28, 874, 896
HpyCH4IV ACGT 2 cut(s) 165, 279
HpyCH4V TGCA 6 cut(s) 199, 419, 497, 614, 788, 866
HpyF10VI GCNNNNNNNGC 6 cut(s) 233, 323, 494, 500, 590, 794
HpyF3I CTNAG 3 cut(s) 158, 242, 709
HpySE526I ACGT 2 cut(s) 165, 279
Hsp92I GRCGYC 3 cut(s) 324, 383, 584
Hsp92II CATG 3 cut(s) 142, 409, 583
HspAI GCGC 2 cut(s) 324, 584
KasI GGCGCC 2 cut(s) 323, 583
KpnI GGTACC 1 cut(s) 691
Ksp22I TGATCA 1 cut(s) 363
Kzo9I GATC 3 cut(s) 12, 231, 363
LmnI GCTCC 1 cut(s) 59
Lsp1109I GCAGC 1 cut(s) 481
MaeI CTAG 3 cut(s) 435, 779, 931
MaeII ACGT 2 cut(s) 165, 279
MaeIII GTNAC 2 cut(s) 275, 742
MalI GATC 3 cut(s) 14, 233, 365
MboI GATC 3 cut(s) 12, 231, 363
MboII GAAGA 5 cut(s) 385, 685, 688, 696, 919
MfeI CAATTG 1 cut(s) 651
MhlI GDGCHC 2 cut(s) 159, 243
MluCI AATT 7 cut(s) 117, 525, 551, 651, 700, 733, 816
Mly113I GGCGCC 2 cut(s) 324, 584
MmeI TCCRAC 2 cut(s) 81, 622
MnlI CCTC 6 cut(s) 369, 373, 547, 622, 701, 903
MseI TTAA 2 cut(s) 309, 828
MslI CAYNNNNRTG 3 cut(s) 176, 756, 851
MspA1I CMGCKG 1 cut(s) 494
MspI CCGG 2 cut(s) 109, 237
MspR9I CCNGG 2 cut(s) 46, 238
MunI CAATTG 1 cut(s) 651
Mva1269I GAATGC 1 cut(s) 503
MvaI CCWGG 1 cut(s) 46
MwoI GCNNNNNNNGC 6 cut(s) 233, 323, 494, 500, 590, 794
NarI GGCGCC 2 cut(s) 324, 584
NciI CCSGG 1 cut(s) 238
NdeII GATC 3 cut(s) 12, 231, 363
NlaIII CATG 3 cut(s) 142, 409, 583
NlaIV GGNNCC 5 cut(s) 55, 192, 325, 585, 689
NmuCI GTSAC 1 cut(s) 742
PaqCI CACCTGC 1 cut(s) 410
PctI GAATGC 1 cut(s) 503
PfeI GAWTC 1 cut(s) 645
PkrI GCNGC 4 cut(s) 10, 43, 400, 496
PluTI GGCGCC 2 cut(s) 327, 587
PshAI GACNNNNGTC 1 cut(s) 26
Psp6I CCWGG 1 cut(s) 44
PspEI GGTNACC 1 cut(s) 742
PspGI CCWGG 1 cut(s) 44
PspN4I GGNNCC 5 cut(s) 55, 192, 325, 585, 689
PspPI GGNCC 1 cut(s) 190
PstI CTGCAG 1 cut(s) 201
PstNI CAGNNNCTG 1 cut(s) 803
PvuII CAGCTG 1 cut(s) 494
RsaI GTAC 6 cut(s) 50, 86, 293, 578, 689, 893
RsaNI GTAC 6 cut(s) 49, 85, 292, 577, 688, 892
RseI CAYNNNNRTG 3 cut(s) 176, 756, 851
SaqAI TTAA 2 cut(s) 309, 828
SatI GCNGC 4 cut(s) 9, 42, 399, 495
Sau3AI GATC 3 cut(s) 12, 231, 363
Sau96I GGNCC 1 cut(s) 190
ScrFI CCNGG 2 cut(s) 46, 238
SduI GDGCHC 2 cut(s) 159, 243
SfcI CTRYAG 2 cut(s) 197, 489
SfoI GGCGCC 2 cut(s) 325, 585
SmiMI CAYNNNNRTG 3 cut(s) 176, 756, 851
SmlI CTYRAG 1 cut(s) 287
SmoI CTYRAG 1 cut(s) 287
Sse9I AATT 7 cut(s) 117, 525, 551, 651, 700, 733, 816
SsiI CCGC 6 cut(s) 8, 42, 273, 345, 399, 593
SspDI GGCGCC 2 cut(s) 323, 583
SspMI CTAG 3 cut(s) 435, 779, 931
StyD4I CCNGG 2 cut(s) 44, 236
StyI CCWWGG 1 cut(s) 877
TaaI ACNGT 3 cut(s) 28, 874, 896
TaiI ACGT 2 cut(s) 168, 282
TaqI TCGA 1 cut(s) 664
TasI AATT 7 cut(s) 117, 525, 551, 651, 700, 733, 816
TatI WGTACW 2 cut(s) 576, 891
TauI GCSGC 3 cut(s) 11, 44, 401
TfiI GAWTC 1 cut(s) 645
Tru1I TTAA 2 cut(s) 309, 828
Tru9I TTAA 2 cut(s) 309, 828
TscAI CASTG 5 cut(s) 201, 250, 843, 877, 901
TseFI GTSAC 1 cut(s) 742
TseI GCWGC 1 cut(s) 494
Tsp45I GTSAC 1 cut(s) 742
TspDTI ATGAA 3 cut(s) 197, 578, 835
TspGWI ACGGA 1 cut(s) 253
TspRI CASTG 5 cut(s) 201, 250, 843, 877, 901
XapI RAATTY 1 cut(s) 525
XmiI GTMKAC 1 cut(s) 914
XspI CTAG 3 cut(s) 435, 779, 931
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.