pycom01g16510

sugar phosphate phosphate translocator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0000810
Physical Location & Seq
Forward (+)
16067715 .. 16069607
1893 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g16510.4

Sequence Viewer

Length: 561 bp
ATGACTCTCAAAAAGGAGGCTTGGCTCACGTATCTCACCCTCGTTCCTGTTGTTACAGGAGTCGTCATTGCAAGTGGGGGTGAACCAAGTTTCCATTTATTTGGTTTCTTAATATGCATAGCAGCAACCGCCGCCAGGGCGCTTAAATCAGTTCTACAAGGGATTTTGCTTTCTTCTGAAGGGGAGAAGCTGAATTCTATGAACCTCCTTCTGTATATGGCTCCGATAGCCGTTGTTTTTTTACTTCCCGCAACGCTTATTATGGAAGAAAATGTTGTTGGTATAACACTAGCTCTTGCAAGAGATGATGTCAAGATCATATGGTACCTACTATTCAATTCGACGTTGGCATATTTTGTAAATCTGACCAACTTTTTGGTCACAAAGCACACCAGTGCTCTAACTCTTCAGGTTCTAGGGAATGCTAAAGGAGCTGTAGCTGTGGTGGTCTCGATATTAATATTTAGAAATCCAGTTTCCGTGACTGGAATGATGGGTTACACTCTTACAGTCTTTGGAGTGATCCTATACAGCGAAGCCAAGAAACGAAGTAAATCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPT

Protein Analysis

187

Amino Acids

20.1

Weight (kDa)

9.41

Isoelectric Point (pI)

27.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 324
AccB1I GGYRCC 1 cut(s) 324
AciI CCGC 3 cut(s) 129, 132, 249
AclWI GGATC 1 cut(s) 517
AcsI RAATTY 1 cut(s) 193
AcuI CTGAAG 2 cut(s) 198, 392
AfaI GTAC 1 cut(s) 326
AfiI CCNNNNNNNGG 1 cut(s) 135
AgsI TTSAA 1 cut(s) 337
AjnI CCWGG 1 cut(s) 134
AjuI GAANNNNNNNTTGG 2 cut(s) 261, 293
AleI CACNNNNGTG 1 cut(s) 393
AloI GAACNNNNNNTCC 2 cut(s) 75, 107
AluBI AGCT 4 cut(s) 190, 293, 434, 440
AluI AGCT 4 cut(s) 190, 293, 434, 440
Alw21I GWGCWC 1 cut(s) 400
Alw26I GTCTC 1 cut(s) 454
AlwI GGATC 1 cut(s) 517
ApeKI GCWGC 1 cut(s) 122
ApoI RAATTY 1 cut(s) 193
ArsI GACNNNNNNTTYG 2 cut(s) 358, 390
AseI ATTAAT 1 cut(s) 458
Asp718I GGTACC 1 cut(s) 324
AspLEI GCGC 1 cut(s) 142
AsuHPI GGTGA 2 cut(s) 28, 92
BanI GGYRCC 1 cut(s) 324
Bbv12I GWGCWC 1 cut(s) 400
BbvI GCAGC 1 cut(s) 134
BccI CCATC 1 cut(s) 487
BceAI ACGGC 1 cut(s) 215
BciT130I CCWGG 1 cut(s) 136
BcoDI GTCTC 1 cut(s) 454
BfaI CTAG 2 cut(s) 290, 416
BfmI CTRYAG 1 cut(s) 435
BfoI RGCGCY 1 cut(s) 143
BglI GCCNNNNNGGC 1 cut(s) 137
BisI GCNGC 2 cut(s) 123, 132
BlsI GCNGC 2 cut(s) 124, 133
Bme1390I CCNGG 1 cut(s) 136
BmiI GGNNCC 2 cut(s) 222, 326
BmrFI CCNGG 1 cut(s) 136
BsaAI YACGTR 1 cut(s) 30
BsaI GGTCTC 1 cut(s) 454
BsaJI CCNNGG 1 cut(s) 135
Bsc4I CCNNNNNNNGG 1 cut(s) 135
Bse1I ACTGG 3 cut(s) 393, 473, 490
Bse3DI GCAATG 1 cut(s) 66
BseBI CCWGG 1 cut(s) 136
BseDI CCNNGG 1 cut(s) 135
BseLI CCNNNNNNNGG 1 cut(s) 135
BseMI GCAATG 1 cut(s) 66
BseNI ACTGG 3 cut(s) 393, 473, 490
BseXI GCAGC 1 cut(s) 134
BshNI GGYRCC 1 cut(s) 324
BsiHKAI GWGCWC 1 cut(s) 400
BslI CCNNNNNNNGG 1 cut(s) 135
BsmAI GTCTC 1 cut(s) 454
BsmI GAATGC 1 cut(s) 427
Bso31I GGTCTC 1 cut(s) 454
Bsp1286I GDGCHC 1 cut(s) 400
Bsp143I GATC 2 cut(s) 315, 522
BspACI CCGC 3 cut(s) 129, 132, 249
BspLI GGNNCC 2 cut(s) 222, 326
BspPI GGATC 1 cut(s) 517
BspT107I GGYRCC 1 cut(s) 324
BspTNI GGTCTC 1 cut(s) 454
BsrDI GCAATG 1 cut(s) 66
BsrI ACTGG 3 cut(s) 393, 473, 490
BssECI CCNNGG 1 cut(s) 135
BssMI GATC 2 cut(s) 315, 522
Bst2UI CCWGG 1 cut(s) 136
Bst4CI ACNGT 1 cut(s) 511
Bst6I CTCTTC 1 cut(s) 411
BstBAI YACGTR 1 cut(s) 30
BstH2I RGCGCY 1 cut(s) 143
BstHHI GCGC 1 cut(s) 142
BstKTI GATC 2 cut(s) 318, 525
BstMAI GTCTC 1 cut(s) 454
BstMBI GATC 2 cut(s) 315, 522
BstMWI GCNNNNNNNGC 5 cut(s) 128, 131, 137, 227, 431
BstNI CCWGG 1 cut(s) 136
BstSCI CCNGG 1 cut(s) 134
BstSFI CTRYAG 1 cut(s) 435
BstV1I GCAGC 1 cut(s) 134
BstXI CCANNNNNNTGG 2 cut(s) 101, 376
BtsIMutI CAGTG 1 cut(s) 400
CfoI GCGC 1 cut(s) 142
Csp6I GTAC 1 cut(s) 325
CviJI RGCY 9 cut(s) 20, 25, 190, 221, 230, 293, 434, 440, 539
CviKI_1 RGCY 9 cut(s) 20, 25, 190, 221, 230, 293, 434, 440, 539
CviQI GTAC 1 cut(s) 325
DpnI GATC 2 cut(s) 317, 524
DpnII GATC 2 cut(s) 315, 522
Eam1104I CTCTTC 1 cut(s) 411
EarI CTCTTC 1 cut(s) 411
Eco31I GGTCTC 1 cut(s) 454
Eco57I CTGAAG 2 cut(s) 198, 392
EcoRI GAATTC 1 cut(s) 193
EcoRII CCWGG 1 cut(s) 134
EcoT22I ATGCAT 1 cut(s) 119
FauI CCCGC 1 cut(s) 256
FauNDI CATATG 1 cut(s) 320
Fnu4HI GCNGC 2 cut(s) 123, 132
Fsp4HI GCNGC 2 cut(s) 123, 132
FspBI CTAG 2 cut(s) 290, 416
GlaI GCGC 1 cut(s) 141
GluI GCNGC 2 cut(s) 123, 132
HaeII RGCGCY 1 cut(s) 143
HhaI GCGC 1 cut(s) 142
Hin6I GCGC 1 cut(s) 140
HinP1I GCGC 1 cut(s) 140
HinfI GANTC 2 cut(s) 4, 60
HphI GGTGA 2 cut(s) 28, 92
Hpy166II GTNNAC 1 cut(s) 83
Hpy188I TCNGA 3 cut(s) 178, 225, 366
Hpy188III TCNNGA 2 cut(s) 313, 451
Hpy8I GTNNAC 1 cut(s) 83
Hpy99I CGWCG 1 cut(s) 346
HpyAV CCTTC 2 cut(s) 173, 218
HpyCH4III ACNGT 1 cut(s) 511
HpyCH4IV ACGT 2 cut(s) 29, 344
HpyCH4V TGCA 3 cut(s) 71, 117, 299
HpyF10VI GCNNNNNNNGC 5 cut(s) 128, 131, 137, 227, 431
HpySE526I ACGT 2 cut(s) 29, 344
HspAI GCGC 1 cut(s) 140
KpnI GGTACC 1 cut(s) 328
Kzo9I GATC 2 cut(s) 315, 522
LmnI GCTCC 2 cut(s) 226, 431
LpnPI CCDG 8 cut(s) 42, 60, 121, 148, 395, 406, 471, 486
Lsp1109I GCAGC 1 cut(s) 134
MaeI CTAG 2 cut(s) 290, 416
MaeII ACGT 2 cut(s) 29, 344
MaeIII GTNAC 4 cut(s) 52, 379, 481, 497
MalI GATC 2 cut(s) 317, 524
MboI GATC 2 cut(s) 315, 522
MboII GAAGA 3 cut(s) 165, 278, 398
MhlI GDGCHC 1 cut(s) 400
MluCI AATT 2 cut(s) 193, 337
MlyI GAGTC 1 cut(s) 69
MnlI CCTC 3 cut(s) 10, 50, 215
Mph1103I ATGCAT 1 cut(s) 119
MseI TTAA 3 cut(s) 110, 144, 458
MslI CAYNNNNRTG 1 cut(s) 393
MspR9I CCNGG 1 cut(s) 136
Mva1269I GAATGC 1 cut(s) 427
MvaI CCWGG 1 cut(s) 136
MwoI GCNNNNNNNGC 5 cut(s) 128, 131, 137, 227, 431
NdeI CATATG 1 cut(s) 320
NdeII GATC 2 cut(s) 315, 522
NlaIV GGNNCC 2 cut(s) 222, 326
NmuCI GTSAC 2 cut(s) 379, 481
NsiI ATGCAT 1 cut(s) 119
OliI CACNNNNGTG 1 cut(s) 393
PctI GAATGC 1 cut(s) 427
PkrI GCNGC 2 cut(s) 124, 133
PleI GAGTC 1 cut(s) 68
PpsI GAGTC 1 cut(s) 68
Ppu21I YACGTR 1 cut(s) 30
PshBI ATTAAT 1 cut(s) 458
Psp6I CCWGG 1 cut(s) 134
PspGI CCWGG 1 cut(s) 134
PspN4I GGNNCC 2 cut(s) 222, 326
RsaI GTAC 1 cut(s) 326
RsaNI GTAC 1 cut(s) 325
RseI CAYNNNNRTG 1 cut(s) 393
SaqAI TTAA 3 cut(s) 110, 144, 458
SatI GCNGC 2 cut(s) 123, 132
Sau3AI GATC 2 cut(s) 315, 522
SchI GAGTC 1 cut(s) 69
ScrFI CCNGG 1 cut(s) 136
SduI GDGCHC 1 cut(s) 400
SetI ASST 9 cut(s) 32, 192, 207, 295, 330, 347, 414, 436, 442
SfcI CTRYAG 1 cut(s) 435
SmiMI CAYNNNNRTG 1 cut(s) 393
Sse9I AATT 2 cut(s) 193, 337
SsiI CCGC 3 cut(s) 129, 132, 249
SspI AATATT 1 cut(s) 462
SspMI CTAG 2 cut(s) 290, 416
StyD4I CCNGG 1 cut(s) 134
TaaI ACNGT 1 cut(s) 511
TaiI ACGT 2 cut(s) 32, 347
TaqI TCGA 2 cut(s) 341, 452
TasI AATT 2 cut(s) 193, 337
TauI GCSGC 1 cut(s) 134
Tru1I TTAA 3 cut(s) 110, 144, 458
Tru9I TTAA 3 cut(s) 110, 144, 458
TscAI CASTG 1 cut(s) 400
TseFI GTSAC 2 cut(s) 379, 481
TseI GCWGC 1 cut(s) 122
Tsp45I GTSAC 2 cut(s) 379, 481
TspDTI ATGAA 1 cut(s) 215
TspGWI ACGGA 1 cut(s) 469
TspRI CASTG 1 cut(s) 400
VspI ATTAAT 1 cut(s) 458
XapI RAATTY 1 cut(s) 193
XspI CTAG 2 cut(s) 290, 416
Zsp2I ATGCAT 1 cut(s) 119
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.