AT5G05820

organic anion transmembrane transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0000810
Physical Location & Seq
Reverse (-)
1751686 .. 1754361
2676 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G05820.1

Sequence Viewer

Length: 930 bp
ATGAAGATGGCGACGAATGGCCGGTTTTTCACAATCGGGCTAGTCGCGTCTTGGTACTCATCGAACATTGGTGTATTGTTGCTGAACAAGTACTTGCTTAGCAATTACGGATTCAAGTACCCGATCTTTCTCACCATGTGTCACATGACGGCTTGTTCGTTACTCAGCTACGTCGCCATTGCTTGGTTGAAGATGGTTCCGATGCAGACGATTCGATCCAGAGTTCAGTTCTTTAAGATCGCAGCTCTAAGTCTCGTTTTTTGTGTGTCGGTGGTCTTTGGTAACATCTCTCTCCGCTTTCTTCCTGTTTCGTTTAACCAAGCCATTGGTGCTACGACGCCGTTTTTCACCGCCGTGTTTGCTTACCTGATGACGCGTAAGAAAGAGGCTTGGTTGACTTACTTCACTCTCGTCCCTGTCGTCACCGGAGTTGTTATTGCTAGTGGGGGTGAGCCAAGCTTTCACCTGTTTGGATTCCTTATGTGCATTGCAGCAACAGCTGCGAGAGCACTTAAATCAGTGCTTCAAGGAATTTTGCTTTCTTCTGAAGGGGAAAAGCTGAACTCCATGAATCTCCTCCTTTACATGGCTCCAATAGCTGTCGTGCTCCTTCTGCCTGCTACTCTTATCATGGAGAAAAATGTTGTCGGCATTACAATTGCACTTGCAAGAGATGATTTCAGAATCGTTTGGTATCTTCTATTCAATTCAGCGCTCGCCTATTTAGTCAACTTGACAAATTTCTTAGTCACAAACCACACTAGCGCCCTGACTTTACAGGTGCTAGGAAACGCCAAAGGAGCAGTAGCAGTGGTGGTCTCTATTCTAATCTTCAAGAATCCGGTGTCAGTGACCGGAATGCTGGGTTACTCCCTCACCGTCTGTGGAGTTATCCTGTACAGCGAAGCCAAGAAACGAAACAAAAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPT

Protein Analysis

309

Amino Acids

33.9

Weight (kDa)

9.81

Isoelectric Point (pI)

28.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPT PF03151 14 - 301 1.2e-46 Triose-phosphate Transporter family
UAA PF08449 29 - 303 1.2e-13 UAA transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 183
AccII CGCG 2 cut(s) 47, 376
AciI CCGC 2 cut(s) 295, 351
AclWI GGATC 1 cut(s) 210
AcoI YGGCCR 1 cut(s) 19
AcsI RAATTY 2 cut(s) 531, 739
AcuI CTGAAG 1 cut(s) 567
AcyI GRCGYC 1 cut(s) 338
AdeI CACNNNGTG 1 cut(s) 138
AfaI GTAC 4 cut(s) 56, 92, 119, 899
AfeI AGCGCT 1 cut(s) 714
AfiI CCNNNNNNNGG 2 cut(s) 183, 586
AflIII ACRYGT 1 cut(s) 374
AgsI TTSAA 5 cut(s) 115, 190, 527, 706, 835
AleI CACNNNNGTG 1 cut(s) 353
AluBI AGCT 6 cut(s) 168, 245, 459, 500, 559, 599
AluI AGCT 6 cut(s) 168, 245, 459, 500, 559, 599
Alw21I GWGCWC 2 cut(s) 511, 609
Alw26I GTCTC 2 cut(s) 257, 823
AlwI GGATC 1 cut(s) 210
Aor51HI AGCGCT 1 cut(s) 714
AoxI GGCC 1 cut(s) 19
ApeKI GCWGC 3 cut(s) 242, 491, 500
ApoI RAATTY 2 cut(s) 531, 739
ArsI GACNNNNNNTTYG 2 cut(s) 139, 171
AspLEI GCGC 2 cut(s) 715, 767
AsuHPI GGTGA 6 cut(s) 124, 340, 415, 455, 461, 868
Bbv12I GWGCWC 2 cut(s) 511, 609
BbvI GCAGC 3 cut(s) 254, 487, 503
BccI CCATC 1 cut(s) 187
BceAI ACGGC 3 cut(s) 165, 325, 338
BcgI CGANNNNNNTGC 2 cut(s) 194, 228
BcoDI GTCTC 2 cut(s) 257, 823
BfaI CTAG 4 cut(s) 41, 441, 762, 785
BfoI RGCGCY 2 cut(s) 716, 768
BisI GCNGC 3 cut(s) 243, 492, 501
BlpI GCTNAGC 1 cut(s) 98
BlsI GCNGC 3 cut(s) 244, 493, 502
BmcAI AGTACT 1 cut(s) 92
BmiI GGNNCC 2 cut(s) 198, 591
BmsI GCATC 1 cut(s) 192
Bpu1102I GCTNAGC 1 cut(s) 98
BsaHI GRCGYC 1 cut(s) 338
BsaI GGTCTC 1 cut(s) 823
BsaWI WCCGGW 3 cut(s) 425, 841, 854
Bsc4I CCNNNNNNNGG 2 cut(s) 183, 586
Bse118I RCCGGY 1 cut(s) 21
Bse3DI GCAATG 2 cut(s) 177, 486
BseLI CCNNNNNNNGG 2 cut(s) 183, 586
BseMI GCAATG 2 cut(s) 177, 486
BseMII CTCAG 1 cut(s) 178
BseRI GAGGAG 1 cut(s) 566
BseXI GCAGC 3 cut(s) 254, 487, 503
BseYI CCCAGC 1 cut(s) 862
Bsh1236I CGCG 2 cut(s) 47, 376
BshFI GGCC 1 cut(s) 21
BsiHKAI GWGCWC 2 cut(s) 511, 609
BsiSI CCGG 4 cut(s) 22, 426, 842, 855
BslFI GGGAC 1 cut(s) 398
BslI CCNNNNNNNGG 2 cut(s) 183, 586
BsmAI GTCTC 2 cut(s) 257, 823
BsmFI GGGAC 1 cut(s) 398
BsmI GAATGC 1 cut(s) 864
BsnI GGCC 1 cut(s) 21
Bso31I GGTCTC 1 cut(s) 823
Bsp1286I GDGCHC 2 cut(s) 511, 609
Bsp1407I TGTACA 1 cut(s) 897
Bsp143I GATC 3 cut(s) 123, 215, 237
Bsp1720I GCTNAGC 1 cut(s) 98
BspACI CCGC 2 cut(s) 295, 351
BspANI GGCC 1 cut(s) 21
BspCNI CTCAG 1 cut(s) 177
BspFNI CGCG 2 cut(s) 47, 376
BspLI GGNNCC 2 cut(s) 198, 591
BspPI GGATC 1 cut(s) 210
BspTNI GGTCTC 1 cut(s) 823
BsrDI GCAATG 2 cut(s) 177, 486
BsrFI RCCGGY 1 cut(s) 21
BsrGI TGTACA 1 cut(s) 897
BssAI RCCGGY 1 cut(s) 21
BssMI GATC 3 cut(s) 123, 215, 237
BssNI GRCGYC 1 cut(s) 338
Bst4CI ACNGT 1 cut(s) 880
BstACI GRCGYC 1 cut(s) 338
BstAPI GCANNNNNTGC 1 cut(s) 500
BstAUI TGTACA 1 cut(s) 897
BstC8I GCNNGC 2 cut(s) 618, 717
BstDEI CTNAG 4 cut(s) 98, 164, 248, 745
BstFNI CGCG 2 cut(s) 47, 376
BstH2I RGCGCY 2 cut(s) 716, 768
BstHHI GCGC 2 cut(s) 715, 767
BstKTI GATC 3 cut(s) 126, 218, 240
BstMAI GTCTC 2 cut(s) 257, 823
BstMBI GATC 3 cut(s) 123, 215, 237
BstMWI GCNNNNNNNGC 8 cut(s) 329, 359, 497, 500, 506, 596, 613, 800
BstUI CGCG 2 cut(s) 47, 376
BstV1I GCAGC 3 cut(s) 254, 487, 503
BstXI CCANNNNNNTGG 1 cut(s) 326
BsuRI GGCC 1 cut(s) 21
BtsI GCAGTG 1 cut(s) 816
BtsIMutI CAGTG 3 cut(s) 525, 816, 855
Cac8I GCNNGC 2 cut(s) 618, 717
CfoI GCGC 2 cut(s) 715, 767
Cfr10I RCCGGY 1 cut(s) 21
CseI GACGC 3 cut(s) 36, 346, 382
Csp6I GTAC 4 cut(s) 55, 91, 118, 898
CviAII CATG 5 cut(s) 136, 145, 568, 586, 631
CviQI GTAC 4 cut(s) 55, 91, 118, 898
DdeI CTNAG 4 cut(s) 98, 164, 248, 745
DpnI GATC 3 cut(s) 125, 217, 239
DpnII GATC 3 cut(s) 123, 215, 237
DraIII CACNNNGTG 1 cut(s) 138
EaeI YGGCCR 1 cut(s) 19
Eco31I GGTCTC 1 cut(s) 823
Eco47III AGCGCT 1 cut(s) 714
Eco57I CTGAAG 1 cut(s) 567
FaeI CATG 5 cut(s) 139, 148, 571, 589, 634
FaiI YATR 6 cut(s) 137, 146, 482, 569, 587, 632
FaqI GGGAC 1 cut(s) 398
FatI CATG 5 cut(s) 135, 144, 567, 585, 630
Fnu4HI GCNGC 3 cut(s) 243, 492, 501
Fsp4HI GCNGC 3 cut(s) 243, 492, 501
FspBI CTAG 4 cut(s) 41, 441, 762, 785
GlaI GCGC 2 cut(s) 714, 766
GluI GCNGC 3 cut(s) 243, 492, 501
GsaI CCCAGC 1 cut(s) 866
HaeII RGCGCY 2 cut(s) 716, 768
HaeIII GGCC 1 cut(s) 21
HapII CCGG 4 cut(s) 22, 426, 842, 855
HgaI GACGC 3 cut(s) 36, 346, 382
HhaI GCGC 2 cut(s) 715, 767
Hin1I GRCGYC 1 cut(s) 338
Hin1II CATG 5 cut(s) 139, 148, 571, 589, 634
Hin6I GCGC 2 cut(s) 713, 765
HinP1I GCGC 2 cut(s) 713, 765
HincII GTYRAC 2 cut(s) 396, 730
HindII GTYRAC 2 cut(s) 396, 730
HindIII AAGCTT 1 cut(s) 457
HinfI GANTC 6 cut(s) 111, 211, 474, 571, 684, 838
HpaII CCGG 4 cut(s) 22, 426, 842, 855
HphI GGTGA 6 cut(s) 124, 340, 415, 455, 461, 868
Hpy166II GTNNAC 2 cut(s) 396, 730
Hpy188I TCNGA 3 cut(s) 201, 547, 683
Hpy188III TCNNGA 2 cut(s) 219, 835
Hpy8I GTNNAC 2 cut(s) 396, 730
Hpy99I CGWCG 3 cut(s) 16, 176, 340
HpyAV CCTTC 2 cut(s) 542, 620
HpyCH4III ACNGT 1 cut(s) 880
HpyCH4IV ACGT 1 cut(s) 171
HpyCH4V TGCA 5 cut(s) 205, 486, 491, 662, 668
HpyF10VI GCNNNNNNNGC 8 cut(s) 329, 359, 497, 500, 506, 596, 613, 800
HpyF3I CTNAG 4 cut(s) 98, 164, 248, 745
HpySE526I ACGT 1 cut(s) 171
Hsp92I GRCGYC 1 cut(s) 338
Hsp92II CATG 5 cut(s) 139, 148, 571, 589, 634
HspAI GCGC 2 cut(s) 713, 765
Kzo9I GATC 3 cut(s) 123, 215, 237
LmnI GCTCC 3 cut(s) 595, 612, 800
Lsp1109I GCAGC 3 cut(s) 254, 487, 503
LweI GCATC 1 cut(s) 192
MaeI CTAG 4 cut(s) 41, 441, 762, 785
MaeII ACGT 1 cut(s) 171
MaeIII GTNAC 7 cut(s) 140, 159, 281, 421, 748, 850, 866
MalI GATC 3 cut(s) 125, 217, 239
MboI GATC 3 cut(s) 123, 215, 237
MboII GAAGA 6 cut(s) 16, 202, 293, 534, 689, 823
MfeI CAATTG 1 cut(s) 657
MhlI GDGCHC 2 cut(s) 511, 609
MluCI AATT 6 cut(s) 103, 531, 657, 706, 739, 925
MluI ACGCGT 1 cut(s) 374
MnlI CCTC 3 cut(s) 379, 587, 884
MseI TTAA 3 cut(s) 234, 315, 513
MslI CAYNNNNRTG 1 cut(s) 353
MspA1I CMGCKG 1 cut(s) 500
MspI CCGG 4 cut(s) 22, 426, 842, 855
MunI CAATTG 1 cut(s) 657
Mva1269I GAATGC 1 cut(s) 864
MvnI CGCG 2 cut(s) 47, 376
MwoI GCNNNNNNNGC 8 cut(s) 329, 359, 497, 500, 506, 596, 613, 800
NdeII GATC 3 cut(s) 123, 215, 237
NlaIII CATG 5 cut(s) 139, 148, 571, 589, 634
NlaIV GGNNCC 2 cut(s) 198, 591
NmuCI GTSAC 4 cut(s) 140, 421, 748, 850
OliI CACNNNNGTG 1 cut(s) 353
PcsI WCGNNNNNNNCGW 2 cut(s) 155, 417
PctI GAATGC 1 cut(s) 864
PfeI GAWTC 6 cut(s) 111, 211, 474, 571, 684, 838
PflMI CCANNNNNTGG 1 cut(s) 183
PkrI GCNGC 3 cut(s) 244, 493, 502
PspFI CCCAGC 1 cut(s) 862
PspN4I GGNNCC 2 cut(s) 198, 591
PvuII CAGCTG 1 cut(s) 500
RsaI GTAC 4 cut(s) 56, 92, 119, 899
RsaNI GTAC 4 cut(s) 55, 91, 118, 898
RseI CAYNNNNRTG 1 cut(s) 353
SaqAI TTAA 3 cut(s) 234, 315, 513
SatI GCNGC 3 cut(s) 243, 492, 501
Sau3AI GATC 3 cut(s) 123, 215, 237
ScaI AGTACT 1 cut(s) 92
SduI GDGCHC 2 cut(s) 511, 609
SfaNI GCATC 1 cut(s) 192
SmiMI CAYNNNNRTG 1 cut(s) 353
Sse9I AATT 6 cut(s) 103, 531, 657, 706, 739, 925
SsiI CCGC 2 cut(s) 295, 351
SspMI CTAG 4 cut(s) 41, 441, 762, 785
TaaI ACNGT 1 cut(s) 880
TaiI ACGT 1 cut(s) 174
TaqI TCGA 2 cut(s) 62, 214
TasI AATT 6 cut(s) 103, 531, 657, 706, 739, 925
TatI WGTACW 2 cut(s) 90, 897
TfiI GAWTC 6 cut(s) 111, 211, 474, 571, 684, 838
Tru1I TTAA 3 cut(s) 234, 315, 513
Tru9I TTAA 3 cut(s) 234, 315, 513
TscAI CASTG 3 cut(s) 525, 816, 855
TseFI GTSAC 4 cut(s) 140, 421, 748, 850
TseI GCWGC 3 cut(s) 242, 491, 500
Tsp45I GTSAC 4 cut(s) 140, 421, 748, 850
TspDTI ATGAA 2 cut(s) 17, 584
TspGWI ACGGA 1 cut(s) 123
TspRI CASTG 3 cut(s) 525, 816, 855
Van91I CCANNNNNTGG 1 cut(s) 183
XapI RAATTY 2 cut(s) 531, 739
XspI CTAG 4 cut(s) 41, 441, 762, 785
ZrmI AGTACT 1 cut(s) 92
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.