Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0000810

Physical Location & Seq

Genomic Coordinates Forward (+)

25614310 .. 25616555

Gene Structure 2246 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G269300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGACTCAACAACCCACGACTGCGCCGATCCCATGGACGACGATCGGCATGGTCGTCGCATGGTACGGCTCCAACATCGGCGTTCTTCTCCTCAACAAGTACTTGCTTACAAACTACGGCTTCAAGTACCCGATTTTCCTCACCCTCTGCCACATGACAGCCTGTACGCTGTTCAGCTACATCGCCATAGCCCTGATGAAGGTGGTTCCTCTGCAGACCGTGAAGTCCAAGGTACAGTTTGCGAAGATCTCGGGGCTCAGTGTCGTTTTCTGCTTCTCCGTCGTTTGTGGGAACGTGTCGTTGAGGTACCTTCCTGTGTCGTTTAATCAGGCCATTGGCGCCACCACTCCCTTCTTTACCGCCGTTTTTGCGTTTTTTATCATCAAGAAGAGGGAGGCCTGGCTTACTTACACCACCCTCATTCCTGTTGTTACAGGTGTCATCATTGCTAGTGGGGGTGAACCAAGCTTCCATCTTTTTGGGTTTATTATGTGTATTACAGCTACAGCAGCAAGGGCATTCAAGTCAGTACTTCAGGAAATTTTGCTTTCCTCTGAAGGGGAAAGGCTGAACTCCATGAACTTGCTGCTGTACATGGCGCCAATCGCTGTAACGTGCTTGCTTCCTGCAACCCTGATTATGGAGGAAAATGTGGTTGGGATCACAATAGACCTTGCTAGAAAAGACGTCAAACTTATTTGGTACCTCTTCTTCAATTCTTCTCTGGCATATTTCGTCAACTTGACCAATTTCCTCGTCACCAAACACACCAGCGCTTTGACCCTCCAGGTGCTGGGGAATGCCAAAGGGGCAGTTGCTGTGGTTGTCTCGATTCTGATGTTTAAAAATCCGGTGTCGTTAATGGGGATGGTGGGCTATGCTCTCACTGTTCTTGGAGTTATTTTGTACAGTGAAGCCAAGAAGAGGTATAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

312

Amino Acids

34.15

Weight (kDa)

9.46

Isoelectric Point (pI)

29.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000810)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11320 AT5G05820
fragaria_vesca	FvH4_3g37700 FvH4_6g12230 FvH4_6g12230 FvH4_7g23830 FvH4_7g23830 FvH4_7g23830 FvH4_7g23830 FvH4_7g23830
malus_domestica	MD01G1145600.v1.1 MD03G1078400.v1.1 MD04G1144900.v1.1 MD07G1212700.v1.1 MD12G1158900.v1.1
prunus_persica	Prupe.2G244900_v2.0.a1 Prupe.2G244900_v2.0.a1 Prupe.2G244900_v2.0.a1 Prupe.6G063400_v2.0.a1 Prupe.6G269300_v2.0.a1 Prupe.6G269300_v2.0.a1
pyrus_communis	pycom01g16510 pycom03g06280 pycom07g19540 pycom12g15080
rosa_chinensis	RchiOBHm_Chr1g0369201 RchiOBHm_Chr3g0464031 RchiOBHm_Chr5g0067971 RchiOBHm_Chr7g0183791
rosa_laevigata	RLG00000024727 RLG00000027147 RLG00000035948
rosa_multiflora	Rmu_co8032292.1_g000001 Rmu_sc0000435.1_g000038 Rmu_sc0001203.1_g000001 Rmu_sc0004616.1_g000004 Rmu_sc0005807.1_g000004 Rmu_sc0019331.1_g000001 Rmu_sc0028685.1_g000001
rosa_roxburghii	Rroxscaffold_1G00012630 Rroxscaffold_1G00013340 Rroxscaffold_4G00287870 Rroxscaffold_4G00291440 Rroxscaffold_5G00365160 Rroxscaffold_6G00416050
rosa_rugosa	Rorug01G0348800 Rorug01G0348800 Rorug01G0348800 Rorug01G0348900 Rorug03G0070200 Rorug04G0183800 Rorug05G0386900
rosa_samantha	Rh1AG355800 Rh1BG319400 Rh1CG333400 Rh1DG350100 Rh3BG131300 Rh3CG133600 Rh3DG132600 Rh5AG445800 Rh5AG536100 Rh5BG463300 Rh5CG485200 Rh5DG477300 Rh7CG459800
rosa_wichuraiana	Rw1G031400 Rw3G010730 Rw5G041630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	223
AatII	GACGTC	1 cut(s)	690
Acc65I	GGTACC	2 cut(s)	306, 702
AccB1I	GGYRCC	4 cut(s)	306, 338, 598, 702
AccB7I	CCANNNNNTGG	1 cut(s)	793
AciI	CCGC	1 cut(s)	360
AclWI	GGATC	2 cut(s)	22, 668
AcsI	RAATTY	1 cut(s)	540
AcuI	CTGAAG	2 cut(s)	518, 576
AcyI	GRCGYC	3 cut(s)	339, 599, 687
AfeI	AGCGCT	1 cut(s)	775
AfiI	CCNNNNNNNGG	5 cut(s)	199, 558, 640, 793, 924
AflIII	ACRYGT	1 cut(s)	294
AgsI	TTSAA	3 cut(s)	124, 523, 715
AjnI	CCWGG	2 cut(s)	398, 786
AjuI	GAANNNNNNNTTGG	2 cut(s)	639, 671
AloI	GAACNNNNNNTCC	2 cut(s)	453, 485
AluBI	AGCT	3 cut(s)	177, 468, 503
AluI	AGCT	3 cut(s)	177, 468, 503
Alw26I	GTCTC	1 cut(s)	832
AlwI	GGATC	2 cut(s)	22, 668
AlwNI	CAGNNNCTG	2 cut(s)	793, 818
Ama87I	CYCGRG	1 cut(s)	250
Aor51HI	AGCGCT	1 cut(s)	775
AoxI	GGCC	2 cut(s)	330, 396
ApeKI	GCWGC	2 cut(s)	509, 586
ApoI	RAATTY	1 cut(s)	540
Asp718I	GGTACC	2 cut(s)	306, 702
AspLEI	GCGC	4 cut(s)	25, 341, 601, 776
AsuHPI	GGTGA	3 cut(s)	133, 470, 751
AvaI	CYCGRG	1 cut(s)	250
BanI	GGYRCC	4 cut(s)	306, 338, 598, 702
BanII	GRGCYC	1 cut(s)	258
BarI	GAAGNNNNNNTAC	2 cut(s)	695, 727
BbvI	GCAGC	2 cut(s)	521, 573
BccI	CCATC	2 cut(s)	480, 862
BceAI	ACGGC	3 cut(s)	82, 133, 347
BcgI	CGANNNNNNTGC	2 cut(s)	37, 71
BciT130I	CCWGG	2 cut(s)	400, 788
BcoDI	GTCTC	1 cut(s)	832
BfaI	CTAG	2 cut(s)	450, 678
BfmI	CTRYAG	2 cut(s)	212, 504
BfoI	RGCGCY	3 cut(s)	342, 602, 777
BglI	GCCNNNNNGGC	1 cut(s)	809
BglII	AGATCT	1 cut(s)	246
BisI	GCNGC	2 cut(s)	510, 587
BlsI	GCNGC	2 cut(s)	511, 588
BmcAI	AGTACT	2 cut(s)	101, 531
Bme1390I	CCNGG	2 cut(s)	400, 788
BmeT110I	CYCGRG	1 cut(s)	250
BmiI	GGNNCC	6 cut(s)	70, 207, 308, 340, 600, 704
BmrFI	CCNGG	2 cut(s)	400, 788
BpmI	CTGGAG	1 cut(s)	770
BsaHI	GRCGYC	3 cut(s)	339, 599, 687
BsaJI	CCNNGG	2 cut(s)	32, 228
BsaWI	WCCGGW	1 cut(s)	850
Bsc4I	CCNNNNNNNGG	5 cut(s)	199, 558, 640, 793, 924
Bse3DI	GCAATG	1 cut(s)	444
BseBI	CCWGG	2 cut(s)	400, 788
BseDI	CCNNGG	2 cut(s)	32, 228
BseGI	GGATG	1 cut(s)	873
BseLI	CCNNNNNNNGG	5 cut(s)	199, 558, 640, 793, 924
BseMI	GCAATG	1 cut(s)	444
BseMII	CTCAG	1 cut(s)	271
BseRI	GAGGAG	1 cut(s)	80
BseXI	GCAGC	2 cut(s)	521, 573
BseYI	CCCAGC	1 cut(s)	793
Bsh1285I	CGRYCG	1 cut(s)	45
BshFI	GGCC	2 cut(s)	332, 398
BshNI	GGYRCC	4 cut(s)	306, 338, 598, 702
BsiEI	CGRYCG	1 cut(s)	45
BsiHKCI	CYCGRG	1 cut(s)	250
BsiSI	CCGG	1 cut(s)	851
BslI	CCNNNNNNNGG	5 cut(s)	199, 558, 640, 793, 924
BsmAI	GTCTC	1 cut(s)	832
BsmI	GAATGC	2 cut(s)	518, 805
BsnI	GGCC	2 cut(s)	332, 398
BsoBI	CYCGRG	1 cut(s)	250
Bsp1286I	GDGCHC	1 cut(s)	258
Bsp1407I	TGTACA	2 cut(s)	591, 906
Bsp143I	GATC	4 cut(s)	27, 42, 246, 660
Bsp19I	CCATGG	1 cut(s)	32
BspACI	CCGC	1 cut(s)	360
BspANI	GGCC	2 cut(s)	332, 398
BspCNI	CTCAG	1 cut(s)	270
BspLI	GGNNCC	6 cut(s)	70, 207, 308, 340, 600, 704
BspMAI	CTGCAG	1 cut(s)	216
BspPI	GGATC	2 cut(s)	22, 668
BspT107I	GGYRCC	4 cut(s)	306, 338, 598, 702
BsrDI	GCAATG	1 cut(s)	444
BsrGI	TGTACA	2 cut(s)	591, 906
BssECI	CCNNGG	2 cut(s)	32, 228
BssMI	GATC	4 cut(s)	27, 42, 246, 660
BssNI	GRCGYC	3 cut(s)	339, 599, 687
BssT1I	CCWWGG	2 cut(s)	32, 228
Bst2UI	CCWGG	2 cut(s)	400, 788
Bst4CI	ACNGT	4 cut(s)	220, 237, 889, 911
Bst6I	CTCTTC	3 cut(s)	383, 713, 917
BstACI	GRCGYC	3 cut(s)	339, 599, 687
BstAUI	TGTACA	2 cut(s)	591, 906
BstC8I	GCNNGC	1 cut(s)	620
BstDEI	CTNAG	1 cut(s)	257
BstDSI	CCRYGG	1 cut(s)	32
BstENI	CCTNNNNNAGG	1 cut(s)	197
BstF5I	GGATG	1 cut(s)	873
BstH2I	RGCGCY	3 cut(s)	342, 602, 777
BstHHI	GCGC	4 cut(s)	25, 341, 601, 776
BstKTI	GATC	4 cut(s)	30, 45, 249, 663
BstMAI	GTCTC	1 cut(s)	832
BstMBI	GATC	4 cut(s)	27, 42, 246, 660
BstMCI	CGRYCG	1 cut(s)	45
BstMWI	GCNNNNNNNGC	6 cut(s)	338, 368, 509, 515, 605, 809
BstNI	CCWGG	2 cut(s)	400, 788
BstSCI	CCNGG	2 cut(s)	398, 786
BstSFI	CTRYAG	2 cut(s)	212, 504
BstV1I	GCAGC	2 cut(s)	521, 573
BstX2I	RGATCY	1 cut(s)	246
BstXI	CCANNNNNNTGG	1 cut(s)	479
BstYI	RGATCY	1 cut(s)	246
BsuRI	GGCC	2 cut(s)	332, 398
BtgI	CCRYGG	1 cut(s)	32
BtgZI	GCGATG	1 cut(s)	166
BtsCI	GGATG	1 cut(s)	873
BtsIMutI	CAGTG	3 cut(s)	265, 885, 916
Cac8I	GCNNGC	1 cut(s)	620
CaiI	CAGNNNCTG	2 cut(s)	793, 818
CfoI	GCGC	4 cut(s)	25, 341, 601, 776
CviAII	CATG	6 cut(s)	33, 49, 60, 154, 577, 595
DdeI	CTNAG	1 cut(s)	257
DinI	GGCGCC	2 cut(s)	340, 600
DpnI	GATC	4 cut(s)	29, 44, 248, 662
DpnII	GATC	4 cut(s)	27, 42, 246, 660
DraI	TTTAAA	1 cut(s)	844
DrdI	GACNNNNNNGTC	1 cut(s)	223
DseDI	GACNNNNNNGTC	1 cut(s)	223
Eam1104I	CTCTTC	3 cut(s)	383, 713, 917
EarI	CTCTTC	3 cut(s)	383, 713, 917
Eco130I	CCWWGG	2 cut(s)	32, 228
Eco147I	AGGCCT	1 cut(s)	398
Eco24I	GRGCYC	1 cut(s)	258
Eco47III	AGCGCT	1 cut(s)	775
Eco57I	CTGAAG	2 cut(s)	518, 576
Eco88I	CYCGRG	1 cut(s)	250
EcoNI	CCTNNNNNAGG	1 cut(s)	197
EcoRII	CCWGG	2 cut(s)	398, 786
EcoT14I	CCWWGG	2 cut(s)	32, 228
EcoT38I	GRGCYC	1 cut(s)	258
EgeI	GGCGCC	2 cut(s)	340, 600
EheI	GGCGCC	2 cut(s)	340, 600
ErhI	CCWWGG	2 cut(s)	32, 228
FaeI	CATG	6 cut(s)	36, 52, 63, 157, 580, 598
FatI	CATG	6 cut(s)	32, 48, 59, 153, 576, 594
Fnu4HI	GCNGC	2 cut(s)	510, 587
FokI	GGATG	1 cut(s)	880
FriOI	GRGCYC	1 cut(s)	258
Fsp4HI	GCNGC	2 cut(s)	510, 587
FspBI	CTAG	2 cut(s)	450, 678
GlaI	GCGC	4 cut(s)	24, 340, 600, 775
GluI	GCNGC	2 cut(s)	510, 587
GsaI	CCCAGC	1 cut(s)	797
GsuI	CTGGAG	1 cut(s)	770
HaeII	RGCGCY	3 cut(s)	342, 602, 777
HaeIII	GGCC	2 cut(s)	332, 398
HapII	CCGG	1 cut(s)	851
HhaI	GCGC	4 cut(s)	25, 341, 601, 776
Hin1I	GRCGYC	3 cut(s)	339, 599, 687
Hin1II	CATG	6 cut(s)	36, 52, 63, 157, 580, 598
Hin6I	GCGC	4 cut(s)	23, 339, 599, 774
HinP1I	GCGC	4 cut(s)	23, 339, 599, 774
HincII	GTYRAC	1 cut(s)	739
HindII	GTYRAC	1 cut(s)	739
HindIII	AAGCTT	1 cut(s)	466
HinfI	GANTC	2 cut(s)	4, 832
HpaII	CCGG	1 cut(s)	851
HphI	GGTGA	3 cut(s)	133, 470, 751
Hpy166II	GTNNAC	2 cut(s)	461, 739
Hpy188I	TCNGA	2 cut(s)	556, 837
Hpy188III	TCNNGA	3 cut(s)	385, 536, 829
Hpy8I	GTNNAC	2 cut(s)	461, 739
Hpy99I	CGWCG	3 cut(s)	43, 59, 284
HpyAV	CCTTC	4 cut(s)	193, 320, 361, 551
HpyCH4III	ACNGT	4 cut(s)	220, 237, 889, 911
HpyCH4IV	ACGT	3 cut(s)	294, 614, 687
HpyCH4V	TGCA	2 cut(s)	214, 629
HpyF10VI	GCNNNNNNNGC	6 cut(s)	338, 368, 509, 515, 605, 809
HpyF3I	CTNAG	1 cut(s)	257
HpySE526I	ACGT	3 cut(s)	294, 614, 687
Hsp92I	GRCGYC	3 cut(s)	339, 599, 687
Hsp92II	CATG	6 cut(s)	36, 52, 63, 157, 580, 598
HspAI	GCGC	4 cut(s)	23, 339, 599, 774
KasI	GGCGCC	2 cut(s)	338, 598
KpnI	GGTACC	2 cut(s)	310, 706
Kzo9I	GATC	4 cut(s)	27, 42, 246, 660
LmnI	GCTCC	1 cut(s)	74
Lsp1109I	GCAGC	2 cut(s)	521, 573
MaeI	CTAG	2 cut(s)	450, 678
MaeII	ACGT	3 cut(s)	294, 614, 687
MaeIII	GTNAC	3 cut(s)	430, 610, 757
MalI	GATC	4 cut(s)	29, 44, 248, 662
MboI	GATC	4 cut(s)	27, 42, 246, 660
MboII	GAAGA	7 cut(s)	77, 256, 400, 700, 703, 711, 934
MflI	RGATCY	1 cut(s)	246
MhlI	GDGCHC	1 cut(s)	258
MluCI	AATT	3 cut(s)	540, 715, 748
Mly113I	GGCGCC	2 cut(s)	339, 599
MmeI	TCCRAC	1 cut(s)	96
MseI	TTAA	3 cut(s)	324, 843, 860
MspI	CCGG	1 cut(s)	851
MspR9I	CCNGG	2 cut(s)	400, 788
Mva1269I	GAATGC	2 cut(s)	518, 805
MvaI	CCWGG	2 cut(s)	400, 788
MwoI	GCNNNNNNNGC	6 cut(s)	338, 368, 509, 515, 605, 809
NarI	GGCGCC	2 cut(s)	339, 599
NcoI	CCATGG	1 cut(s)	32
NdeII	GATC	4 cut(s)	27, 42, 246, 660
NlaIII	CATG	6 cut(s)	36, 52, 63, 157, 580, 598
NlaIV	GGNNCC	6 cut(s)	70, 207, 308, 340, 600, 704
NmuCI	GTSAC	1 cut(s)	757
PceI	AGGCCT	1 cut(s)	398
PcsI	WCGNNNNNNNCGW	2 cut(s)	23, 51
PctI	GAATGC	2 cut(s)	518, 805
PfeI	GAWTC	1 cut(s)	832
PflMI	CCANNNNNTGG	1 cut(s)	793
PkrI	GCNGC	2 cut(s)	511, 588
Ple19I	CGATCG	1 cut(s)	45
PluTI	GGCGCC	2 cut(s)	342, 602
Psp6I	CCWGG	2 cut(s)	398, 786
PspFI	CCCAGC	1 cut(s)	793
PspGI	CCWGG	2 cut(s)	398, 786
PspN4I	GGNNCC	6 cut(s)	70, 207, 308, 340, 600, 704
PstI	CTGCAG	1 cut(s)	216
PstNI	CAGNNNCTG	2 cut(s)	793, 818
PsuI	RGATCY	1 cut(s)	246
PvuI	CGATCG	1 cut(s)	45
SaqAI	TTAA	3 cut(s)	324, 843, 860
SatI	GCNGC	2 cut(s)	510, 587
Sau3AI	GATC	4 cut(s)	27, 42, 246, 660
ScaI	AGTACT	2 cut(s)	101, 531
ScrFI	CCNGG	2 cut(s)	400, 788
SduI	GDGCHC	1 cut(s)	258
SfcI	CTRYAG	2 cut(s)	212, 504
SfoI	GGCGCC	2 cut(s)	340, 600
Sse9I	AATT	3 cut(s)	540, 715, 748
SseBI	AGGCCT	1 cut(s)	398
SsiI	CCGC	1 cut(s)	360
SspDI	GGCGCC	2 cut(s)	338, 598
SspMI	CTAG	2 cut(s)	450, 678
StuI	AGGCCT	1 cut(s)	398
StyD4I	CCNGG	2 cut(s)	398, 786
StyI	CCWWGG	2 cut(s)	32, 228
TaaI	ACNGT	4 cut(s)	220, 237, 889, 911
TaiI	ACGT	3 cut(s)	297, 617, 690
TaqI	TCGA	1 cut(s)	830
TasI	AATT	3 cut(s)	540, 715, 748
TatI	WGTACW	4 cut(s)	99, 529, 591, 906
TfiI	GAWTC	1 cut(s)	832
Tru1I	TTAA	3 cut(s)	324, 843, 860
Tru9I	TTAA	3 cut(s)	324, 843, 860
TscAI	CASTG	3 cut(s)	265, 892, 916
TseFI	GTSAC	1 cut(s)	757
TseI	GCWGC	2 cut(s)	509, 586
Tsp45I	GTSAC	1 cut(s)	757
TspDTI	ATGAA	2 cut(s)	212, 593
TspGWI	ACGGA	1 cut(s)	268
TspRI	CASTG	3 cut(s)	265, 892, 916
Van91I	CCANNNNNTGG	1 cut(s)	793
XagI	CCTNNNNNAGG	1 cut(s)	197
XapI	RAATTY	1 cut(s)	540
XspI	CTAG	2 cut(s)	450, 678
ZraI	GACGTC	1 cut(s)	688
ZrmI	AGTACT	2 cut(s)	101, 531

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.