Rh1CG333400

Ribosomal protein L35Ae

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
Physical Location & Seq
Forward (+)
60844799 .. 60849380
4582 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG333400.1

Sequence Viewer

Length: 1218 bp
ATGGCACAGATTGCAATATTGTCTGCTTCAGCAAGTCTTATACCCTTCAATAGTGGTGGCTGTGGTGGTGGTGCAAAGCAATTGAGCAAGTCATTGCAGCTTTGTTCTTCAAGAAGATATACAACTTCTACTACTACTAGTTCACCATCATTAACCACAACAAGGTTTAGAAGCAAGAGAATTGGGAAGTTTGATTTTTGGGCAAGAGCAGCAGCTAGTCATGGAAGTTTGGGGGAGGTAGATGAGTGGACATTGCCAGATAGCAAGCCGTCCGATTCAGACCCAGCAGCGCCGGCGATGAAGGGGAAGAGCCGCTTGTTCACGATCGGGCTCGTGACGGCCTGGTACTCATCCAACATTGGCGTTCTGCTGCTGAACAAGTACTTGCTTAGCAACTATGGCTTCAAGTACCCGATCTTCCTCACCATGTGCCACATGACGGCGTGTTCTCTTCTCAGCTACATCGCAATCGCGTGGATGAAGATGGTGCCGATGCAGACCATTCGATCCCGGGTTCAGTTTCTGAAGATCACGGCGTTGAGTCTCGTGTTCTGTGTTTCTGTGGTGTTTGGGAACATTTCGCTGCGGTATTTGCCGGTGTCGTTTAACCAGGCTATAGGGGCAACCACGCCGTTCTTCACTGCCGTTTTCGCTTACTTTATGACCCTGAAAAGAGAGGCTTGGCTGACTTACCTGACGCTCGTTCCTGTGGTTACAGGGGTCATCATTGCCAGTGGGGGTGAACCAAGTTTCCATCTATTTGGGTTCTTAATTTGTATCGCAGCAACAGCTGCCAGGGCTCTTAAGTCAGTGCTACAAGGGATTTTGCTTTCTTCTGAAGGGGAGAAGCTGAATTCGATGAACCTCCTATTGTATATGGCTCCGATAGCCGTTGTTTTCCTACTCCCTGCAACACTTATCATGGAAGATAATGTCGTTGGGATAACATTAGCTCTTGCAAGAGATGATGTCAAGATCATATGGTATCTGTTATTCAATTCAGCATTGGCATATTTTGTAAATCTGACCAACTTTTTGGTCACAAAACACACCAGTGCTCTGACTCTTCAGGTACTAGGAAATGCAAAGGGCGCTGTAGCTGTGGTTGTTTCAATCTTGATTTTTAGAAATCCTGTTTCTGTGACTGGAATGATGGGTTATTCCCTTACAGTCTTTGGAGTAATTCTATACAGTGAAGCGAAGAAAAGAAGTAAATGA

Protein Analysis

405

Amino Acids

43.99

Weight (kDa)

9.78

Isoelectric Point (pI)

36.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPT PF03151 111 - 398 2.6e-46 Triose-phosphate Transporter family
UAA PF08449 125 - 400 1.5e-14 UAA transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 487
AccII CGCG 1 cut(s) 473
AciI CCGC 2 cut(s) 313, 586
AclWI GGATC 1 cut(s) 501
AcsI RAATTY 1 cut(s) 853
AcuI CTGAAG 4 cut(s) 12, 545, 858, 1052
AdeI CACNNNGTG 1 cut(s) 429
AfaI GTAC 4 cut(s) 347, 383, 410, 1074
AfiI CCNNNNNNNGG 2 cut(s) 162, 439
AflII CTTAAG 1 cut(s) 803
AgsI TTSAA 5 cut(s) 49, 111, 406, 997, 1113
AhlI ACTAGT 1 cut(s) 137
AjnI CCWGG 3 cut(s) 341, 609, 794
AleI CACNNNNGTG 1 cut(s) 1053
AloI GAACNNNNNNTCC 2 cut(s) 735, 767
AluBI AGCT 7 cut(s) 100, 215, 459, 791, 850, 953, 1100
AluI AGCT 7 cut(s) 100, 215, 459, 791, 850, 953, 1100
Alw21I GWGCWC 1 cut(s) 1060
Alw26I GTCTC 1 cut(s) 548
AlwI GGATC 1 cut(s) 501
AlwNI CAGNNNCTG 1 cut(s) 523
Ama87I CYCGRG 1 cut(s) 510
AoxI GGCC 1 cut(s) 339
ApeKI GCWGC 8 cut(s) 97, 209, 212, 287, 370, 583, 782, 791
ApoI RAATTY 1 cut(s) 853
ArsI GACNNNNNNTTYG 2 cut(s) 1018, 1050
AspLEI GCGC 2 cut(s) 292, 1094
AsuC2I CCSGG 2 cut(s) 511, 512
AsuHPI GGTGA 3 cut(s) 135, 415, 752
AvaI CYCGRG 1 cut(s) 510
BanI GGYRCC 1 cut(s) 487
BanII GRGCYC 2 cut(s) 333, 802
BarI GAAGNNNNNNTAC 2 cut(s) 401, 433
BauI CACGAG 2 cut(s) 332, 545
Bbv12I GWGCWC 1 cut(s) 1060
BbvI GCAGC 8 cut(s) 109, 221, 224, 299, 357, 570, 778, 794
BccI CCATC 4 cut(s) 154, 478, 762, 1147
BceAI ACGGC 7 cut(s) 253, 354, 456, 549, 616, 629, 875
BcgI CGANNNNNNTGC 2 cut(s) 485, 519
BciT130I CCWGG 3 cut(s) 343, 611, 796
BcnI CCSGG 2 cut(s) 511, 512
BcoDI GTCTC 1 cut(s) 548
BcuI ACTAGT 1 cut(s) 137
BfaI CTAG 3 cut(s) 138, 216, 1076
BfmI CTRYAG 2 cut(s) 615, 1095
BfoI RGCGCY 2 cut(s) 293, 1095
BfrI CTTAAG 1 cut(s) 803
BisI GCNGC 9 cut(s) 98, 210, 213, 288, 313, 371, 584, 783, 792
BlpI GCTNAGC 1 cut(s) 389
BlsI GCNGC 9 cut(s) 99, 211, 214, 289, 314, 372, 585, 784, 793
BmcAI AGTACT 1 cut(s) 383
Bme1390I CCNGG 5 cut(s) 343, 511, 512, 611, 796
BmeT110I CYCGRG 1 cut(s) 510
BmiI GGNNCC 2 cut(s) 489, 882
BmrFI CCNGG 5 cut(s) 343, 511, 512, 611, 796
BmsI GCATC 1 cut(s) 483
Bpu1102I GCTNAGC 1 cut(s) 389
BpuMI CCSGG 2 cut(s) 511, 512
BsaJI CCNNGG 2 cut(s) 510, 795
Bsc4I CCNNNNNNNGG 2 cut(s) 162, 439
Bse118I RCCGGY 2 cut(s) 292, 595
Bse1I ACTGG 3 cut(s) 732, 1053, 1150
Bse3DI GCAATG 3 cut(s) 92, 251, 726
BseBI CCWGG 3 cut(s) 343, 611, 796
BseDI CCNNGG 2 cut(s) 510, 795
BseGI GGATG 2 cut(s) 350, 483
BseLI CCNNNNNNNGG 2 cut(s) 162, 439
BseMI GCAATG 3 cut(s) 92, 251, 726
BseMII CTCAG 1 cut(s) 469
BseNI ACTGG 3 cut(s) 732, 1053, 1150
BseXI GCAGC 8 cut(s) 109, 221, 224, 299, 357, 570, 778, 794
BseYI CCCAGC 1 cut(s) 283
Bsh1236I CGCG 1 cut(s) 473
Bsh1285I CGRYCG 1 cut(s) 327
BshFI GGCC 1 cut(s) 341
BshNI GGYRCC 1 cut(s) 487
BsiEI CGRYCG 1 cut(s) 327
BsiHKAI GWGCWC 1 cut(s) 1060
BsiHKCI CYCGRG 1 cut(s) 510
BsiSI CCGG 3 cut(s) 293, 511, 596
BslI CCNNNNNNNGG 2 cut(s) 162, 439
BsmAI GTCTC 1 cut(s) 548
BsnI GGCC 1 cut(s) 341
BsoBI CYCGRG 1 cut(s) 510
Bsp1286I GDGCHC 3 cut(s) 333, 802, 1060
Bsp143I GATC 5 cut(s) 324, 414, 506, 528, 975
Bsp1720I GCTNAGC 1 cut(s) 389
BspACI CCGC 2 cut(s) 313, 586
BspANI GGCC 1 cut(s) 341
BspCNI CTCAG 1 cut(s) 468
BspFNI CGCG 1 cut(s) 473
BspLI GGNNCC 2 cut(s) 489, 882
BspPI GGATC 1 cut(s) 501
BspQI GCTCTTC 1 cut(s) 302
BspT107I GGYRCC 1 cut(s) 487
BspTI CTTAAG 1 cut(s) 803
BsrDI GCAATG 3 cut(s) 92, 251, 726
BsrFI RCCGGY 2 cut(s) 292, 595
BsrI ACTGG 3 cut(s) 732, 1053, 1150
BssAI RCCGGY 2 cut(s) 292, 595
BssECI CCNNGG 2 cut(s) 510, 795
BssMI GATC 5 cut(s) 324, 414, 506, 528, 975
BssSI CACGAG 2 cut(s) 332, 545
Bst2BI CACGAG 2 cut(s) 332, 545
Bst2UI CCWGG 3 cut(s) 343, 611, 796
Bst4CI ACNGT 2 cut(s) 1171, 1193
Bst6I CTCTTC 3 cut(s) 302, 456, 1071
BstAFI CTTAAG 1 cut(s) 803
BstAPI GCANNNNNTGC 2 cut(s) 11, 791
BstC8I GCNNGC 2 cut(s) 266, 294
BstDEI CTNAG 2 cut(s) 389, 455
BstF5I GGATG 2 cut(s) 350, 483
BstFNI CGCG 1 cut(s) 473
BstH2I RGCGCY 2 cut(s) 293, 1095
BstHHI GCGC 2 cut(s) 292, 1094
BstKTI GATC 5 cut(s) 327, 417, 509, 531, 978
BstMAI GTCTC 1 cut(s) 548
BstMBI GATC 5 cut(s) 324, 414, 506, 528, 975
BstMCI CGRYCG 1 cut(s) 327
BstNI CCWGG 3 cut(s) 343, 611, 796
BstSCI CCNGG 5 cut(s) 341, 509, 510, 609, 794
BstSFI CTRYAG 2 cut(s) 615, 1095
BstUI CGCG 1 cut(s) 473
BstV1I GCAGC 8 cut(s) 109, 221, 224, 299, 357, 570, 778, 794
BstXI CCANNNNNNTGG 2 cut(s) 761, 1036
BsuRI GGCC 1 cut(s) 341
BtgZI GCGATG 2 cut(s) 311, 448
BtsCI GGATG 2 cut(s) 350, 483
BtsI GCAGTG 1 cut(s) 639
BtsIMutI CAGTG 5 cut(s) 639, 739, 816, 1060, 1198
Cac8I GCNNGC 2 cut(s) 266, 294
CaiI CAGNNNCTG 1 cut(s) 523
CfoI GCGC 2 cut(s) 292, 1094
Cfr10I RCCGGY 2 cut(s) 292, 595
Cfr9I CCCGGG 1 cut(s) 510
CseI GACGC 1 cut(s) 706
Csp6I GTAC 4 cut(s) 346, 382, 409, 1073
CspCI CAANNNNNGTGG 2 cut(s) 37, 72
CviAII CATG 4 cut(s) 221, 427, 436, 922
CviQI GTAC 4 cut(s) 346, 382, 409, 1073
DdeI CTNAG 2 cut(s) 389, 455
DpnI GATC 5 cut(s) 326, 416, 508, 530, 977
DpnII GATC 5 cut(s) 324, 414, 506, 528, 975
DraIII CACNNNGTG 1 cut(s) 429
Eam1104I CTCTTC 3 cut(s) 302, 456, 1071
EarI CTCTTC 3 cut(s) 302, 456, 1071
Eco24I GRGCYC 2 cut(s) 333, 802
Eco57I CTGAAG 4 cut(s) 12, 545, 858, 1052
Eco88I CYCGRG 1 cut(s) 510
EcoRI GAATTC 1 cut(s) 853
EcoRII CCWGG 3 cut(s) 341, 609, 794
EcoT38I GRGCYC 2 cut(s) 333, 802
FaeI CATG 4 cut(s) 224, 430, 439, 925
FalI AAGNNNNNCTT 4 cut(s) 299, 331, 664, 696
FatI CATG 4 cut(s) 220, 426, 435, 921
FauNDI CATATG 1 cut(s) 980
Fnu4HI GCNGC 9 cut(s) 98, 210, 213, 288, 313, 371, 584, 783, 792
FokI GGATG 2 cut(s) 337, 490
FriOI GRGCYC 2 cut(s) 333, 802
Fsp4HI GCNGC 9 cut(s) 98, 210, 213, 288, 313, 371, 584, 783, 792
FspBI CTAG 3 cut(s) 138, 216, 1076
GlaI GCGC 2 cut(s) 291, 1093
GluI GCNGC 9 cut(s) 98, 210, 213, 288, 313, 371, 584, 783, 792
GsaI CCCAGC 1 cut(s) 287
HaeII RGCGCY 2 cut(s) 293, 1095
HaeIII GGCC 1 cut(s) 341
HapII CCGG 3 cut(s) 293, 511, 596
HgaI GACGC 1 cut(s) 706
HhaI GCGC 2 cut(s) 292, 1094
Hin1II CATG 4 cut(s) 224, 430, 439, 925
Hin6I GCGC 2 cut(s) 290, 1092
HinP1I GCGC 2 cut(s) 290, 1092
HinfI GANTC 3 cut(s) 275, 541, 1063
HpaII CCGG 3 cut(s) 293, 511, 596
HphI GGTGA 3 cut(s) 135, 415, 752
Hpy166II GTNNAC 4 cut(s) 143, 249, 321, 743
Hpy188I TCNGA 7 cut(s) 274, 280, 525, 838, 885, 1026, 1062
Hpy188III TCNNGA 5 cut(s) 111, 322, 334, 973, 1117
Hpy8I GTNNAC 4 cut(s) 143, 249, 321, 743
HpyAV CCTTC 3 cut(s) 55, 295, 833
HpyCH4III ACNGT 2 cut(s) 1171, 1193
HpyCH4V TGCA 7 cut(s) 14, 74, 97, 496, 911, 959, 1085
HpyF3I CTNAG 2 cut(s) 389, 455
Hsp92II CATG 4 cut(s) 224, 430, 439, 925
HspAI GCGC 2 cut(s) 290, 1092
KroI GCCGGC 1 cut(s) 292
KroNI GCCGGC 1 cut(s) 294
Kzo9I GATC 5 cut(s) 324, 414, 506, 528, 975
LguI GCTCTTC 1 cut(s) 302
LmnI GCTCC 1 cut(s) 886
Lsp1109I GCAGC 8 cut(s) 109, 221, 224, 299, 357, 570, 778, 794
LweI GCATC 1 cut(s) 483
MaeI CTAG 3 cut(s) 138, 216, 1076
MaeIII GTNAC 4 cut(s) 334, 712, 1039, 1141
MalI GATC 5 cut(s) 326, 416, 508, 530, 977
MboI GATC 5 cut(s) 324, 414, 506, 528, 975
MfeI CAATTG 1 cut(s) 80
MhlI GDGCHC 3 cut(s) 333, 802, 1060
MluCI AATT 6 cut(s) 80, 180, 771, 853, 997, 1182
MlyI GAGTC 2 cut(s) 550, 1057
MmeI TCCRAC 1 cut(s) 378
MnlI CCTC 4 cut(s) 229, 431, 670, 875
MreI CGCCGGCG 1 cut(s) 292
MroNI GCCGGC 1 cut(s) 292
MseI TTAA 4 cut(s) 152, 606, 770, 804
MslI CAYNNNNRTG 1 cut(s) 1053
MspA1I CMGCKG 1 cut(s) 791
MspCI CTTAAG 1 cut(s) 803
MspI CCGG 3 cut(s) 293, 511, 596
MspR9I CCNGG 5 cut(s) 343, 511, 512, 611, 796
MunI CAATTG 1 cut(s) 80
MvaI CCWGG 3 cut(s) 343, 611, 796
MvnI CGCG 1 cut(s) 473
NaeI GCCGGC 1 cut(s) 294
NciI CCSGG 2 cut(s) 511, 512
NdeI CATATG 1 cut(s) 980
NdeII GATC 5 cut(s) 324, 414, 506, 528, 975
NgoMIV GCCGGC 1 cut(s) 292
NlaIII CATG 4 cut(s) 224, 430, 439, 925
NlaIV GGNNCC 2 cut(s) 489, 882
NmuCI GTSAC 3 cut(s) 334, 1039, 1141
OliI CACNNNNGTG 1 cut(s) 1053
PciSI GCTCTTC 1 cut(s) 302
PdiI GCCGGC 1 cut(s) 294
PfeI GAWTC 1 cut(s) 275
PkrI GCNGC 9 cut(s) 99, 211, 214, 289, 314, 372, 585, 784, 793
Ple19I CGATCG 1 cut(s) 327
PleI GAGTC 2 cut(s) 549, 1057
PpsI GAGTC 2 cut(s) 549, 1057
Psp6I CCWGG 3 cut(s) 341, 609, 794
PspFI CCCAGC 1 cut(s) 283
PspGI CCWGG 3 cut(s) 341, 609, 794
PspN4I GGNNCC 2 cut(s) 489, 882
PstNI CAGNNNCTG 1 cut(s) 523
PvuI CGATCG 1 cut(s) 327
PvuII CAGCTG 1 cut(s) 791
RsaI GTAC 4 cut(s) 347, 383, 410, 1074
RsaNI GTAC 4 cut(s) 346, 382, 409, 1073
RseI CAYNNNNRTG 1 cut(s) 1053
SapI GCTCTTC 1 cut(s) 302
SaqAI TTAA 4 cut(s) 152, 606, 770, 804
SatI GCNGC 9 cut(s) 98, 210, 213, 288, 313, 371, 584, 783, 792
Sau3AI GATC 5 cut(s) 324, 414, 506, 528, 975
ScaI AGTACT 1 cut(s) 383
SchI GAGTC 2 cut(s) 550, 1057
ScrFI CCNGG 5 cut(s) 343, 511, 512, 611, 796
SduI GDGCHC 3 cut(s) 333, 802, 1060
SfaNI GCATC 1 cut(s) 483
SfcI CTRYAG 2 cut(s) 615, 1095
SgrAI CRCCGGYG 1 cut(s) 292
SmaI CCCGGG 1 cut(s) 512
SmiMI CAYNNNNRTG 1 cut(s) 1053
SmlI CTYRAG 1 cut(s) 803
SmoI CTYRAG 1 cut(s) 803
SpeI ACTAGT 1 cut(s) 137
Sse9I AATT 6 cut(s) 80, 180, 771, 853, 997, 1182
SsiI CCGC 2 cut(s) 313, 586
SspI AATATT 1 cut(s) 18
SspMI CTAG 3 cut(s) 138, 216, 1076
StyD4I CCNGG 5 cut(s) 341, 509, 510, 609, 794
TaaI ACNGT 2 cut(s) 1171, 1193
TaqI TCGA 2 cut(s) 505, 857
TasI AATT 6 cut(s) 80, 180, 771, 853, 997, 1182
TatI WGTACW 1 cut(s) 381
TauI GCSGC 1 cut(s) 315
TfiI GAWTC 1 cut(s) 275
Tru1I TTAA 4 cut(s) 152, 606, 770, 804
Tru9I TTAA 4 cut(s) 152, 606, 770, 804
TscAI CASTG 5 cut(s) 646, 739, 816, 1060, 1198
TseFI GTSAC 3 cut(s) 334, 1039, 1141
TseI GCWGC 8 cut(s) 97, 209, 212, 287, 370, 583, 782, 791
Tsp45I GTSAC 3 cut(s) 334, 1039, 1141
TspDTI ATGAA 3 cut(s) 314, 494, 875
TspMI CCCGGG 1 cut(s) 510
TspRI CASTG 5 cut(s) 646, 739, 816, 1060, 1198
Vha464I CTTAAG 1 cut(s) 803
XapI RAATTY 1 cut(s) 853
XmaI CCCGGG 1 cut(s) 510
XspI CTAG 3 cut(s) 138, 216, 1076
ZrmI AGTACT 1 cut(s) 383
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.