Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0000810

Physical Location & Seq

Genomic Coordinates Forward (+)

46490570 .. 46507727

Gene Structure 17158 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00365160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

ATGGTTTTGGACTGGAGGCCGGGAATGCTTGGGTTGTTGTTTGAGGCTTGCTTGAAAGATGTATTGTTTAGAGGTTCTGAACTCGTTGCTTGGAGCATTTGGCTCGTCAAGAGGTGCCACAAGCCTGATCTCAAAGTGGAATTACAAGAATTTCTTGGTTTATGGCAGAGTGAGCTGAGCTTTCATTTCTTTGGATTTGTTATGTGCATTAGTGCAACTGGTCCGATGGCATTCAAATCTGTTCTTGAGGATTATGATTCTAGGTTTTGGATGCCTATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006810 GO:0007275 GO:0008150 GO:0008152 GO:0009791 GO:0009987 GO:0010154 GO:0010191 GO:0010214 GO:0012505 GO:0015780 GO:0015931 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048359 GO:0048608 GO:0048731 GO:0048856 GO:0051179 GO:0051234 GO:0055085 GO:0061458 GO:0071702 GO:0071705 GO:1901264

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

93

Amino Acids

10.89

Weight (kDa)

5.56

Isoelectric Point (pI)

53.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000810)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11320 AT5G05820
fragaria_vesca	FvH4_3g37700 FvH4_6g12230 FvH4_6g12230 FvH4_7g23830 FvH4_7g23830 FvH4_7g23830 FvH4_7g23830 FvH4_7g23830
malus_domestica	MD01G1145600.v1.1 MD03G1078400.v1.1 MD04G1144900.v1.1 MD07G1212700.v1.1 MD12G1158900.v1.1
prunus_persica	Prupe.2G244900_v2.0.a1 Prupe.2G244900_v2.0.a1 Prupe.2G244900_v2.0.a1 Prupe.6G063400_v2.0.a1 Prupe.6G269300_v2.0.a1 Prupe.6G269300_v2.0.a1
pyrus_communis	pycom01g16510 pycom03g06280 pycom07g19540 pycom12g15080
rosa_chinensis	RchiOBHm_Chr1g0369201 RchiOBHm_Chr3g0464031 RchiOBHm_Chr5g0067971 RchiOBHm_Chr7g0183791
rosa_laevigata	RLG00000024727 RLG00000027147 RLG00000035948
rosa_multiflora	Rmu_co8032292.1_g000001 Rmu_sc0000435.1_g000038 Rmu_sc0001203.1_g000001 Rmu_sc0004616.1_g000004 Rmu_sc0005807.1_g000004 Rmu_sc0019331.1_g000001 Rmu_sc0028685.1_g000001
rosa_roxburghii	Rroxscaffold_1G00012630 Rroxscaffold_1G00013340 Rroxscaffold_4G00287870 Rroxscaffold_4G00291440 Rroxscaffold_5G00365160 Rroxscaffold_6G00416050
rosa_rugosa	Rorug01G0348800 Rorug01G0348800 Rorug01G0348800 Rorug01G0348900 Rorug03G0070200 Rorug04G0183800 Rorug05G0386900
rosa_samantha	Rh1AG355800 Rh1BG319400 Rh1CG333400 Rh1DG350100 Rh3BG131300 Rh3CG133600 Rh3DG132600 Rh5AG445800 Rh5AG536100 Rh5BG463300 Rh5CG485200 Rh5DG477300 Rh7CG459800
rosa_wichuraiana	Rw1G031400 Rw3G010730 Rw5G041630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	114
AcsI	RAATTY	1 cut(s)	149
AgsI	TTSAA	2 cut(s)	55, 235
AluBI	AGCT	2 cut(s)	175, 180
AluI	AGCT	2 cut(s)	175, 180
AoxI	GGCC	1 cut(s)	17
ApoI	RAATTY	1 cut(s)	149
AspS9I	GGNCC	1 cut(s)	221
AsuC2I	CCSGG	1 cut(s)	21
AvaII	GGWCC	1 cut(s)	221
BanI	GGYRCC	1 cut(s)	114
BccI	CCATC	1 cut(s)	220
BcgI	CGANNNNNNTGC	2 cut(s)	85, 119
BcnI	CCSGG	1 cut(s)	21
BfaI	CTAG	1 cut(s)	261
BlpI	GCTNAGC	1 cut(s)	176
Bme1390I	CCNGG	1 cut(s)	21
Bme18I	GGWCC	1 cut(s)	221
BmgT120I	GGNCC	1 cut(s)	221
BmiI	GGNNCC	1 cut(s)	116
BmrFI	CCNGG	1 cut(s)	21
BmsI	GCATC	1 cut(s)	261
BpmI	CTGGAG	1 cut(s)	34
Bpu1102I	GCTNAGC	1 cut(s)	176
BpuEI	CTTGAG	1 cut(s)	266
BpuMI	CCSGG	1 cut(s)	21
Bse1I	ACTGG	2 cut(s)	17, 223
BseGI	GGATG	1 cut(s)	276
BseMII	CTCAG	1 cut(s)	167
BseNI	ACTGG	2 cut(s)	17, 223
BshFI	GGCC	1 cut(s)	19
BshNI	GGYRCC	1 cut(s)	114
BsiSI	CCGG	1 cut(s)	20
BsmI	GAATGC	2 cut(s)	30, 230
BsnI	GGCC	1 cut(s)	19
Bsp143I	GATC	1 cut(s)	127
Bsp1720I	GCTNAGC	1 cut(s)	176
BspANI	GGCC	1 cut(s)	19
BspCNI	CTCAG	1 cut(s)	168
BspLI	GGNNCC	1 cut(s)	116
BspT107I	GGYRCC	1 cut(s)	114
BsrI	ACTGG	2 cut(s)	17, 223
BssMI	GATC	1 cut(s)	127
BstC8I	GCNNGC	1 cut(s)	49
BstDEI	CTNAG	1 cut(s)	176
BstF5I	GGATG	1 cut(s)	276
BstKTI	GATC	1 cut(s)	130
BstMBI	GATC	1 cut(s)	127
BstMWI	GCNNNNNNNGC	2 cut(s)	25, 172
BstSCI	CCNGG	1 cut(s)	19
BsuRI	GGCC	1 cut(s)	19
BtsCI	GGATG	1 cut(s)	276
Cac8I	GCNNGC	1 cut(s)	49
Cfr13I	GGNCC	1 cut(s)	221
CviJI	RGCY	6 cut(s)	19, 47, 103, 124, 175, 180
CviKI_1	RGCY	6 cut(s)	19, 47, 103, 124, 175, 180
DdeI	CTNAG	1 cut(s)	176
DpnI	GATC	1 cut(s)	129
DpnII	GATC	1 cut(s)	127
Eco47I	GGWCC	1 cut(s)	221
FaiI	YATR	5 cut(s)	163, 203, 255, 278, 280
FalI	AAGNNNNNCTT	2 cut(s)	138, 170
FspBI	CTAG	1 cut(s)	261
GsuI	CTGGAG	1 cut(s)	34
HaeIII	GGCC	1 cut(s)	19
HapII	CCGG	1 cut(s)	20
HinfI	GANTC	1 cut(s)	257
HpaII	CCGG	1 cut(s)	20
Hpy188I	TCNGA	2 cut(s)	79, 225
Hpy188III	TCNNGA	2 cut(s)	109, 245
HpyCH4V	TGCA	2 cut(s)	207, 215
HpyF10VI	GCNNNNNNNGC	2 cut(s)	25, 172
HpyF3I	CTNAG	1 cut(s)	176
Kzo9I	GATC	1 cut(s)	127
LmnI	GCTCC	1 cut(s)	93
LpnPI	CCDG	3 cut(s)	33, 138, 204
LweI	GCATC	1 cut(s)	261
MaeI	CTAG	1 cut(s)	261
MalI	GATC	1 cut(s)	129
MboI	GATC	1 cut(s)	127
MluCI	AATT	2 cut(s)	140, 149
MnlI	CCTC	5 cut(s)	9, 37, 65, 105, 241
MspI	CCGG	1 cut(s)	20
MspR9I	CCNGG	1 cut(s)	21
Mva1269I	GAATGC	2 cut(s)	30, 230
MwoI	GCNNNNNNNGC	2 cut(s)	25, 172
NciI	CCSGG	1 cut(s)	21
NdeII	GATC	1 cut(s)	127
NlaIV	GGNNCC	1 cut(s)	116
PctI	GAATGC	2 cut(s)	30, 230
PfeI	GAWTC	1 cut(s)	257
PspN4I	GGNNCC	1 cut(s)	116
PspPI	GGNCC	1 cut(s)	221
Sau3AI	GATC	1 cut(s)	127
Sau96I	GGNCC	1 cut(s)	221
ScrFI	CCNGG	1 cut(s)	21
SetI	ASST	5 cut(s)	76, 116, 177, 182, 266
SfaNI	GCATC	1 cut(s)	261
SinI	GGWCC	1 cut(s)	221
SmlI	CTYRAG	1 cut(s)	245
SmoI	CTYRAG	1 cut(s)	245
Sse9I	AATT	2 cut(s)	140, 149
SspMI	CTAG	1 cut(s)	261
StyD4I	CCNGG	1 cut(s)	19
TasI	AATT	2 cut(s)	140, 149
TfiI	GAWTC	1 cut(s)	257
TspDTI	ATGAA	1 cut(s)	173
VpaK11BI	GGWCC	1 cut(s)	221
XapI	RAATTY	1 cut(s)	149
XspI	CTAG	1 cut(s)	261

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.