pycom07g19540

sugar phosphate phosphate translocator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0000810
Physical Location & Seq
Forward (+)
21887846 .. 21890251
2406 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g19540.1

Sequence Viewer

Length: 897 bp
ATGAAGGGGAAAAGCCGCTTGTTCACGATCGGGCTCGTTACCGCCTGGTACTCGTCCAACATTGGGGTTTTGCTGCTGAACAAGTACTTGCTAAGCAACTATGGCTTCAAATACCCGATCTTCCTCACCATGTGCCACATGACGGCTTGCTCTCTGCTCAGCTACATCGCAATTGCTTGGATGAAGATGGTTCCGATGCAGACTATTCGATCCCGGGTTCAATTCTTGAAGATCGCGGCGCTCAGCCTGGTGTTTTGTGTCTCCGTCGTGTTTGGGAACATTTCGCTGCGGTATTTGCCGGTGTCGTTTAACCAGGCTATTGGCGCCACCACGCCGTTCTTCACTGCGGTTTTCGCCTACTTTATGACTCTCAAAAGGGAGGCTTGGCTCACGTATCTCACCCTCGTTCCTGTTGTTACAGGAGTCATCATTGCAAGTGGGGGTGAACCAACTGATGCCACTGGTTATCTTCTCTTTTTGGTTAAATGGGTACTTAATGGCTTGCCGTTATATTCCAGGGAGAAGCTGAATTCCATGAACCTCCTTCTGTATATGGCTCCGATAGCCGTTGTTTTCTTACTTCCGGCAACACTTATCATGGAAGAAAATGTTGTTGGTATAACACTAGCTCTTGCAAGAGACGATGTCAAGATCATATGGTACCTACTATTCAATTCGGCGCTGGCATATTTTGTAAATCTGACCAACTTTTTGGTCACAAAGCACACTAGTGCTCTGACTCTTCAGGTGCTAGGGAACGCTAAAGGAGCTGTAGCTGTTGTGGTCTCGATATTGATTTTTAGAAATCCAGTTTCTGTGACAGGAATGCTGGGTTACACTCTTACAGTCTTTGGAGTGATCCTATACAGTGAAGCCAAGAAACGAAGCAAATCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPT

Protein Analysis

299

Amino Acids

33.03

Weight (kDa)

9.79

Isoelectric Point (pI)

29.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPT PF03151 12 - 290 1.9e-37 Triose-phosphate Transporter family
EamA PF00892 38 - 146 4.9e-06 EamA-like transporter family
UAA PF08449 173 - 292 2.1e-10 UAA transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 660
AccB1I GGYRCC 2 cut(s) 323, 660
AccII CGCG 1 cut(s) 236
AciI CCGC 5 cut(s) 16, 42, 236, 289, 347
AclWI GGATC 2 cut(s) 204, 853
AcsI RAATTY 1 cut(s) 529
AcuI CTGAAG 1 cut(s) 728
AcyI GRCGYC 1 cut(s) 324
AdeI CACNNNGTG 1 cut(s) 132
AfaI GTAC 4 cut(s) 50, 86, 492, 662
AfiI CCNNNNNNNGG 2 cut(s) 63, 142
AgsI TTSAA 4 cut(s) 109, 221, 229, 673
AhlI ACTAGT 1 cut(s) 728
AjnI CCWGG 4 cut(s) 44, 246, 312, 515
AjuI GAANNNNNNNTTGG 2 cut(s) 597, 629
AleI CACNNNNGTG 1 cut(s) 729
AluBI AGCT 5 cut(s) 162, 526, 629, 770, 776
AluI AGCT 5 cut(s) 162, 526, 629, 770, 776
Alw21I GWGCWC 1 cut(s) 736
Alw26I GTCTC 3 cut(s) 265, 633, 790
AlwI GGATC 2 cut(s) 204, 853
AlwNI CAGNNNCTG 1 cut(s) 815
Ama87I CYCGRG 1 cut(s) 213
ApeKI GCWGC 2 cut(s) 73, 286
ApoI RAATTY 1 cut(s) 529
ArsI GACNNNNNNTTYG 2 cut(s) 694, 726
Asp718I GGTACC 1 cut(s) 660
AspLEI GCGC 3 cut(s) 241, 326, 682
AsuC2I CCSGG 2 cut(s) 214, 215
AsuHPI GGTGA 3 cut(s) 118, 391, 455
AvaI CYCGRG 1 cut(s) 213
BanI GGYRCC 2 cut(s) 323, 660
BanII GRGCYC 1 cut(s) 36
Bbv12I GWGCWC 1 cut(s) 736
BbvI GCAGC 2 cut(s) 60, 273
BccI CCATC 1 cut(s) 181
BceAI ACGGC 4 cut(s) 159, 319, 490, 551
BcgI CGANNNNNNTGC 2 cut(s) 188, 222
BciT130I CCWGG 4 cut(s) 46, 248, 314, 517
BcnI CCSGG 2 cut(s) 214, 215
BcoDI GTCTC 3 cut(s) 265, 633, 790
BcuI ACTAGT 1 cut(s) 728
BfaI CTAG 3 cut(s) 626, 729, 752
BfmI CTRYAG 1 cut(s) 771
BfoI RGCGCY 3 cut(s) 242, 327, 683
BisI GCNGC 4 cut(s) 16, 74, 237, 287
BlpI GCTNAGC 3 cut(s) 92, 158, 242
BlsI GCNGC 4 cut(s) 17, 75, 238, 288
BmcAI AGTACT 1 cut(s) 86
Bme1390I CCNGG 6 cut(s) 46, 214, 215, 248, 314, 517
BmeT110I CYCGRG 1 cut(s) 213
BmiI GGNNCC 4 cut(s) 192, 325, 558, 662
BmrFI CCNGG 6 cut(s) 46, 214, 215, 248, 314, 517
BmsI GCATC 2 cut(s) 186, 445
Bpu1102I GCTNAGC 3 cut(s) 92, 158, 242
BpuMI CCSGG 2 cut(s) 214, 215
BsaAI YACGTR 1 cut(s) 393
BsaHI GRCGYC 1 cut(s) 324
BsaI GGTCTC 1 cut(s) 790
BsaJI CCNNGG 2 cut(s) 213, 516
Bsc4I CCNNNNNNNGG 2 cut(s) 63, 142
Bse118I RCCGGY 1 cut(s) 298
Bse1I ACTGG 2 cut(s) 466, 809
Bse3DI GCAATG 1 cut(s) 429
BseBI CCWGG 4 cut(s) 46, 248, 314, 517
BseDI CCNNGG 2 cut(s) 213, 516
BseGI GGATG 1 cut(s) 186
BseLI CCNNNNNNNGG 2 cut(s) 63, 142
BseMI GCAATG 1 cut(s) 429
BseMII CTCAG 2 cut(s) 172, 256
BseNI ACTGG 2 cut(s) 466, 809
BseXI GCAGC 2 cut(s) 60, 273
BseYI CCCAGC 1 cut(s) 829
Bsh1236I CGCG 1 cut(s) 236
Bsh1285I CGRYCG 1 cut(s) 30
BshNI GGYRCC 2 cut(s) 323, 660
BsiEI CGRYCG 1 cut(s) 30
BsiHKAI GWGCWC 1 cut(s) 736
BsiHKCI CYCGRG 1 cut(s) 213
BsiSI CCGG 3 cut(s) 214, 299, 584
BslI CCNNNNNNNGG 2 cut(s) 63, 142
BsmAI GTCTC 3 cut(s) 265, 633, 790
BsmBI CGTCTC 1 cut(s) 633
BsmI GAATGC 1 cut(s) 831
Bso31I GGTCTC 1 cut(s) 790
BsoBI CYCGRG 1 cut(s) 213
Bsp1286I GDGCHC 2 cut(s) 36, 736
Bsp143I GATC 6 cut(s) 27, 117, 209, 231, 651, 858
Bsp1720I GCTNAGC 3 cut(s) 92, 158, 242
BspACI CCGC 5 cut(s) 16, 42, 236, 289, 347
BspCNI CTCAG 2 cut(s) 171, 255
BspFNI CGCG 1 cut(s) 236
BspLI GGNNCC 4 cut(s) 192, 325, 558, 662
BspPI GGATC 2 cut(s) 204, 853
BspT107I GGYRCC 2 cut(s) 323, 660
BspTNI GGTCTC 1 cut(s) 790
BsrDI GCAATG 1 cut(s) 429
BsrFI RCCGGY 1 cut(s) 298
BsrI ACTGG 2 cut(s) 466, 809
BssAI RCCGGY 1 cut(s) 298
BssECI CCNNGG 2 cut(s) 213, 516
BssMI GATC 6 cut(s) 27, 117, 209, 231, 651, 858
BssNI GRCGYC 1 cut(s) 324
Bst2UI CCWGG 4 cut(s) 46, 248, 314, 517
Bst4CI ACNGT 2 cut(s) 847, 869
Bst6I CTCTTC 1 cut(s) 747
BstACI GRCGYC 1 cut(s) 324
BstBAI YACGTR 1 cut(s) 393
BstC8I GCNNGC 3 cut(s) 148, 503, 684
BstDEI CTNAG 3 cut(s) 92, 158, 242
BstF5I GGATG 1 cut(s) 186
BstFNI CGCG 1 cut(s) 236
BstH2I RGCGCY 3 cut(s) 242, 327, 683
BstHHI GCGC 3 cut(s) 241, 326, 682
BstKTI GATC 6 cut(s) 30, 120, 212, 234, 654, 861
BstMAI GTCTC 3 cut(s) 265, 633, 790
BstMBI GATC 6 cut(s) 27, 117, 209, 231, 651, 858
BstMCI CGRYCG 1 cut(s) 30
BstMWI GCNNNNNNNGC 6 cut(s) 102, 295, 323, 353, 563, 767
BstNI CCWGG 4 cut(s) 46, 248, 314, 517
BstSCI CCNGG 6 cut(s) 44, 212, 213, 246, 312, 515
BstSFI CTRYAG 1 cut(s) 771
BstUI CGCG 1 cut(s) 236
BstV1I GCAGC 2 cut(s) 60, 273
BstXI CCANNNNNNTGG 2 cut(s) 320, 712
BtgZI GCGATG 1 cut(s) 151
BtsCI GGATG 1 cut(s) 186
BtsI GCAGTG 1 cut(s) 342
BtsIMutI CAGTG 3 cut(s) 342, 459, 874
Cac8I GCNNGC 3 cut(s) 148, 503, 684
CaiI CAGNNNCTG 1 cut(s) 815
CfoI GCGC 3 cut(s) 241, 326, 682
Cfr10I RCCGGY 1 cut(s) 298
Cfr9I CCCGGG 1 cut(s) 213
Csp6I GTAC 4 cut(s) 49, 85, 491, 661
CviAII CATG 4 cut(s) 130, 139, 535, 598
CviQI GTAC 4 cut(s) 49, 85, 491, 661
DdeI CTNAG 3 cut(s) 92, 158, 242
DinI GGCGCC 1 cut(s) 325
DpnI GATC 6 cut(s) 29, 119, 211, 233, 653, 860
DpnII GATC 6 cut(s) 27, 117, 209, 231, 651, 858
DraIII CACNNNGTG 1 cut(s) 132
Eam1104I CTCTTC 1 cut(s) 747
EarI CTCTTC 1 cut(s) 747
Eco24I GRGCYC 1 cut(s) 36
Eco31I GGTCTC 1 cut(s) 790
Eco57I CTGAAG 1 cut(s) 728
Eco88I CYCGRG 1 cut(s) 213
EcoRI GAATTC 1 cut(s) 529
EcoRII CCWGG 4 cut(s) 44, 246, 312, 515
EcoT38I GRGCYC 1 cut(s) 36
EgeI GGCGCC 1 cut(s) 325
EheI GGCGCC 1 cut(s) 325
Esp3I CGTCTC 1 cut(s) 633
FaeI CATG 4 cut(s) 133, 142, 538, 601
FalI AAGNNNNNCTT 2 cut(s) 367, 399
FatI CATG 4 cut(s) 129, 138, 534, 597
FauNDI CATATG 1 cut(s) 656
Fnu4HI GCNGC 4 cut(s) 16, 74, 237, 287
FokI GGATG 1 cut(s) 193
FriOI GRGCYC 1 cut(s) 36
Fsp4HI GCNGC 4 cut(s) 16, 74, 237, 287
FspBI CTAG 3 cut(s) 626, 729, 752
GlaI GCGC 3 cut(s) 240, 325, 681
GluI GCNGC 4 cut(s) 16, 74, 237, 287
GsaI CCCAGC 1 cut(s) 833
HaeII RGCGCY 3 cut(s) 242, 327, 683
HapII CCGG 3 cut(s) 214, 299, 584
HhaI GCGC 3 cut(s) 241, 326, 682
Hin1I GRCGYC 1 cut(s) 324
Hin1II CATG 4 cut(s) 133, 142, 538, 601
Hin6I GCGC 3 cut(s) 239, 324, 680
HinP1I GCGC 3 cut(s) 239, 324, 680
HinfI GANTC 3 cut(s) 367, 423, 739
HpaII CCGG 3 cut(s) 214, 299, 584
HphI GGTGA 3 cut(s) 118, 391, 455
Hpy166II GTNNAC 2 cut(s) 24, 446
Hpy188I TCNGA 4 cut(s) 195, 561, 702, 738
Hpy188III TCNNGA 4 cut(s) 25, 226, 649, 787
Hpy8I GTNNAC 2 cut(s) 24, 446
Hpy99I CGWCG 1 cut(s) 269
HpyAV CCTTC 1 cut(s) 554
HpyCH4III ACNGT 2 cut(s) 847, 869
HpyCH4IV ACGT 1 cut(s) 392
HpyCH4V TGCA 3 cut(s) 199, 434, 635
HpyF10VI GCNNNNNNNGC 6 cut(s) 102, 295, 323, 353, 563, 767
HpyF3I CTNAG 3 cut(s) 92, 158, 242
HpySE526I ACGT 1 cut(s) 392
Hsp92I GRCGYC 1 cut(s) 324
Hsp92II CATG 4 cut(s) 133, 142, 538, 601
HspAI GCGC 3 cut(s) 239, 324, 680
KasI GGCGCC 1 cut(s) 323
KpnI GGTACC 1 cut(s) 664
Kzo9I GATC 6 cut(s) 27, 117, 209, 231, 651, 858
LmnI GCTCC 2 cut(s) 562, 767
Lsp1109I GCAGC 2 cut(s) 60, 273
LweI GCATC 2 cut(s) 186, 445
MaeI CTAG 3 cut(s) 626, 729, 752
MaeII ACGT 1 cut(s) 392
MaeIII GTNAC 5 cut(s) 37, 415, 715, 817, 833
MalI GATC 6 cut(s) 29, 119, 211, 233, 653, 860
MboI GATC 6 cut(s) 27, 117, 209, 231, 651, 858
MboII GAAGA 7 cut(s) 112, 196, 241, 331, 461, 614, 734
MfeI CAATTG 1 cut(s) 171
MhlI GDGCHC 2 cut(s) 36, 736
MluCI AATT 4 cut(s) 171, 221, 529, 673
Mly113I GGCGCC 1 cut(s) 324
MlyI GAGTC 3 cut(s) 361, 432, 733
MmeI TCCRAC 1 cut(s) 81
MnlI CCTC 4 cut(s) 134, 373, 413, 551
MseI TTAA 3 cut(s) 309, 483, 495
MslI CAYNNNNRTG 1 cut(s) 729
MspI CCGG 3 cut(s) 214, 299, 584
MspR9I CCNGG 6 cut(s) 46, 214, 215, 248, 314, 517
MunI CAATTG 1 cut(s) 171
Mva1269I GAATGC 1 cut(s) 831
MvaI CCWGG 4 cut(s) 46, 248, 314, 517
MvnI CGCG 1 cut(s) 236
MwoI GCNNNNNNNGC 6 cut(s) 102, 295, 323, 353, 563, 767
NarI GGCGCC 1 cut(s) 324
NciI CCSGG 2 cut(s) 214, 215
NdeI CATATG 1 cut(s) 656
NdeII GATC 6 cut(s) 27, 117, 209, 231, 651, 858
NlaIII CATG 4 cut(s) 133, 142, 538, 601
NlaIV GGNNCC 4 cut(s) 192, 325, 558, 662
NmuCI GTSAC 2 cut(s) 715, 817
OliI CACNNNNGTG 1 cut(s) 729
PctI GAATGC 1 cut(s) 831
PflFI GACNNNGTC 1 cut(s) 644
PkrI GCNGC 4 cut(s) 17, 75, 238, 288
Ple19I CGATCG 1 cut(s) 30
PleI GAGTC 3 cut(s) 361, 431, 733
PluTI GGCGCC 1 cut(s) 327
PpsI GAGTC 3 cut(s) 361, 431, 733
Ppu21I YACGTR 1 cut(s) 393
Psp6I CCWGG 4 cut(s) 44, 246, 312, 515
PspFI CCCAGC 1 cut(s) 829
PspGI CCWGG 4 cut(s) 44, 246, 312, 515
PspN4I GGNNCC 4 cut(s) 192, 325, 558, 662
PstNI CAGNNNCTG 1 cut(s) 815
PsyI GACNNNGTC 1 cut(s) 644
PvuI CGATCG 1 cut(s) 30
RsaI GTAC 4 cut(s) 50, 86, 492, 662
RsaNI GTAC 4 cut(s) 49, 85, 491, 661
RseI CAYNNNNRTG 1 cut(s) 729
SaqAI TTAA 3 cut(s) 309, 483, 495
SatI GCNGC 4 cut(s) 16, 74, 237, 287
Sau3AI GATC 6 cut(s) 27, 117, 209, 231, 651, 858
ScaI AGTACT 1 cut(s) 86
SchI GAGTC 3 cut(s) 361, 432, 733
ScrFI CCNGG 6 cut(s) 46, 214, 215, 248, 314, 517
SduI GDGCHC 2 cut(s) 36, 736
SetI ASST 9 cut(s) 164, 395, 528, 543, 631, 666, 750, 772, 778
SfaNI GCATC 2 cut(s) 186, 445
SfcI CTRYAG 1 cut(s) 771
SfoI GGCGCC 1 cut(s) 325
SmaI CCCGGG 1 cut(s) 215
SmiMI CAYNNNNRTG 1 cut(s) 729
SpeI ACTAGT 1 cut(s) 728
Sse9I AATT 4 cut(s) 171, 221, 529, 673
SsiI CCGC 5 cut(s) 16, 42, 236, 289, 347
SspDI GGCGCC 1 cut(s) 323
SspMI CTAG 3 cut(s) 626, 729, 752
StyD4I CCNGG 6 cut(s) 44, 212, 213, 246, 312, 515
TaaI ACNGT 2 cut(s) 847, 869
TaiI ACGT 1 cut(s) 395
TaqI TCGA 2 cut(s) 208, 788
TasI AATT 4 cut(s) 171, 221, 529, 673
TatI WGTACW 1 cut(s) 84
TauI GCSGC 2 cut(s) 18, 239
Tru1I TTAA 3 cut(s) 309, 483, 495
Tru9I TTAA 3 cut(s) 309, 483, 495
TscAI CASTG 3 cut(s) 349, 466, 874
TseFI GTSAC 2 cut(s) 715, 817
TseI GCWGC 2 cut(s) 73, 286
Tsp45I GTSAC 2 cut(s) 715, 817
TspDTI ATGAA 3 cut(s) 17, 197, 551
TspGWI ACGGA 1 cut(s) 253
TspMI CCCGGG 1 cut(s) 213
TspRI CASTG 3 cut(s) 349, 466, 874
Tth111I GACNNNGTC 1 cut(s) 644
XapI RAATTY 1 cut(s) 529
XmaI CCCGGG 1 cut(s) 213
XspI CTAG 3 cut(s) 626, 729, 752
ZrmI AGTACT 1 cut(s) 86
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.