pycom03g06280

Sugar phosphate phosphate translocator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0000810
Physical Location & Seq
Reverse (-)
4923343 .. 4923786
444 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g06280.1

Sequence Viewer

Length: 444 bp
ATGTCGAAGTTCGTCACGGTCGGATTAATAACAGCATGGTACTCGTCGAACATCGGAGTTTTGTTGTTGAACAAGTTTCTCCTGAGCAATTACGGGTTCAAGTACCCGATTTTCTTGACCCTTTGCCACATGCTCGCGTGCTCCCTCCTCAGCTACGTAGCCATTTCGTGGATGAAGGTCGTTCCCATGCAGAGCATCAAGTCTCGCGTCCAGTTCTTCAAGATATCGTCCCTCGGTCTCATCTTCTGTTTGTCTGTCGTTGGCGGGAACATCTCGCTCCGGTACCTCGCCGTGTCGTTTAACCAGGCCATCGGCGCCACCACGCCGTTCTTCACGGCTGTGTTTGCGTATATTATGACTCTCAAGAAGGAGGGCTGGGTCACGTATGTTACTCTTATTCCGGTTGTCACCGGCGTTATCATTGCCAGCGGGGTAAGACCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPT

Protein Analysis

148

Amino Acids

16.22

Weight (kDa)

9.86

Isoelectric Point (pI)

30.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPT PF03151 8 - 143 1.4e-21 Triose-phosphate Transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 282
AccB1I GGYRCC 2 cut(s) 282, 314
AccB7I CCANNNNNTGG 1 cut(s) 168
AccII CGCG 2 cut(s) 137, 207
AciI CCGC 2 cut(s) 264, 429
AcyI GRCGYC 1 cut(s) 315
AfaI GTAC 3 cut(s) 41, 104, 284
AfiI CCNNNNNNNGG 1 cut(s) 168
AgsI TTSAA 3 cut(s) 70, 100, 220
AjnI CCWGG 1 cut(s) 303
AleI CACNNNNGTG 1 cut(s) 338
AluBI AGCT 1 cut(s) 153
AluI AGCT 1 cut(s) 153
Alw21I GWGCWC 1 cut(s) 143
Alw26I GTCTC 2 cut(s) 207, 242
AoxI GGCC 1 cut(s) 306
AseI ATTAAT 1 cut(s) 26
Asp718I GGTACC 1 cut(s) 282
AspLEI GCGC 1 cut(s) 317
AsuHPI GGTGA 1 cut(s) 400
BanI GGYRCC 2 cut(s) 282, 314
Bbv12I GWGCWC 1 cut(s) 143
BbvCI CCTCAGC 1 cut(s) 149
BccI CCATC 1 cut(s) 317
BceAI ACGGC 3 cut(s) 275, 310, 351
BcgI CGANNNNNNTGC 2 cut(s) 24, 58
BciT130I CCWGG 1 cut(s) 305
BcoDI GTCTC 2 cut(s) 207, 242
BfoI RGCGCY 1 cut(s) 318
Bme1390I CCNGG 1 cut(s) 305
BmiI GGNNCC 2 cut(s) 284, 316
BmrFI CCNGG 1 cut(s) 305
BmsI GCATC 1 cut(s) 204
Bpu10I CCTNAGC 2 cut(s) 83, 149
BpuEI CTTGAG 1 cut(s) 347
BsaAI YACGTR 2 cut(s) 157, 384
BsaHI GRCGYC 1 cut(s) 315
BsaI GGTCTC 1 cut(s) 242
BsaJI CCNNGG 1 cut(s) 232
BsaWI WCCGGW 2 cut(s) 279, 400
Bsc4I CCNNNNNNNGG 1 cut(s) 168
Bse118I RCCGGY 1 cut(s) 410
Bse1I ACTGG 1 cut(s) 211
Bse3DI GCAATG 1 cut(s) 420
BseBI CCWGG 1 cut(s) 305
BseDI CCNNGG 1 cut(s) 232
BseGI GGATG 1 cut(s) 177
BseLI CCNNNNNNNGG 1 cut(s) 168
BseMI GCAATG 1 cut(s) 420
BseMII CTCAG 2 cut(s) 74, 163
BseNI ACTGG 1 cut(s) 211
BseRI GAGGAG 1 cut(s) 137
BseYI CCCAGC 1 cut(s) 375
Bsh1236I CGCG 2 cut(s) 137, 207
Bsh1285I CGRYCG 1 cut(s) 21
BshFI GGCC 1 cut(s) 308
BshNI GGYRCC 2 cut(s) 282, 314
BsiEI CGRYCG 1 cut(s) 21
BsiHKAI GWGCWC 1 cut(s) 143
BsiSI CCGG 3 cut(s) 280, 401, 411
BslFI GGGAC 1 cut(s) 214
BslI CCNNNNNNNGG 1 cut(s) 168
BsmAI GTCTC 2 cut(s) 207, 242
BsmFI GGGAC 1 cut(s) 214
BsnI GGCC 1 cut(s) 308
Bso31I GGTCTC 1 cut(s) 242
Bsp1286I GDGCHC 1 cut(s) 143
BspACI CCGC 2 cut(s) 264, 429
BspANI GGCC 1 cut(s) 308
BspCNI CTCAG 2 cut(s) 75, 162
BspFNI CGCG 2 cut(s) 137, 207
BspLI GGNNCC 2 cut(s) 284, 316
BspT107I GGYRCC 2 cut(s) 282, 314
BspTNI GGTCTC 1 cut(s) 242
BsrDI GCAATG 1 cut(s) 420
BsrFI RCCGGY 1 cut(s) 410
BsrI ACTGG 1 cut(s) 211
BssAI RCCGGY 1 cut(s) 410
BssECI CCNNGG 1 cut(s) 232
BssNI GRCGYC 1 cut(s) 315
Bst2UI CCWGG 1 cut(s) 305
Bst4CI ACNGT 2 cut(s) 19, 441
BstACI GRCGYC 1 cut(s) 315
BstBAI YACGTR 2 cut(s) 157, 384
BstC8I GCNNGC 3 cut(s) 135, 139, 427
BstDEI CTNAG 2 cut(s) 83, 149
BstF5I GGATG 1 cut(s) 177
BstFNI CGCG 2 cut(s) 137, 207
BstH2I RGCGCY 1 cut(s) 318
BstHHI GCGC 1 cut(s) 317
BstMAI GTCTC 2 cut(s) 207, 242
BstMCI CGRYCG 1 cut(s) 21
BstMWI GCNNNNNNNGC 2 cut(s) 314, 344
BstNI CCWGG 1 cut(s) 305
BstNSI RCATGY 1 cut(s) 133
BstSCI CCNGG 1 cut(s) 303
BstSNI TACGTA 1 cut(s) 157
BstUI CGCG 2 cut(s) 137, 207
BsuRI GGCC 1 cut(s) 308
BtsCI GGATG 1 cut(s) 177
Cac8I GCNNGC 3 cut(s) 135, 139, 427
CfoI GCGC 1 cut(s) 317
Cfr10I RCCGGY 1 cut(s) 410
CseI GACGC 1 cut(s) 196
Csp6I GTAC 3 cut(s) 40, 103, 283
CviAII CATG 3 cut(s) 36, 130, 187
CviJI RGCY 5 cut(s) 153, 161, 308, 338, 375
CviKI_1 RGCY 5 cut(s) 153, 161, 308, 338, 375
CviQI GTAC 3 cut(s) 40, 103, 283
DdeI CTNAG 2 cut(s) 83, 149
DinI GGCGCC 1 cut(s) 316
Eco105I TACGTA 1 cut(s) 157
Eco31I GGTCTC 1 cut(s) 242
Eco32I GATATC 1 cut(s) 225
EcoRII CCWGG 1 cut(s) 303
EcoRV GATATC 1 cut(s) 225
EgeI GGCGCC 1 cut(s) 316
EheI GGCGCC 1 cut(s) 316
FaeI CATG 3 cut(s) 39, 133, 190
FaiI YATR 6 cut(s) 37, 131, 188, 351, 356, 387
FaqI GGGAC 1 cut(s) 214
FatI CATG 3 cut(s) 35, 129, 186
FauI CCCGC 2 cut(s) 257, 422
FokI GGATG 1 cut(s) 184
GlaI GCGC 1 cut(s) 316
GsaI CCCAGC 1 cut(s) 379
HaeII RGCGCY 1 cut(s) 318
HaeIII GGCC 1 cut(s) 308
HapII CCGG 3 cut(s) 280, 401, 411
HgaI GACGC 1 cut(s) 196
HhaI GCGC 1 cut(s) 317
Hin1I GRCGYC 1 cut(s) 315
Hin1II CATG 3 cut(s) 39, 133, 190
Hin6I GCGC 1 cut(s) 315
HinP1I GCGC 1 cut(s) 315
HinfI GANTC 1 cut(s) 358
HpaII CCGG 3 cut(s) 280, 401, 411
HphI GGTGA 1 cut(s) 400
Hpy188I TCNGA 2 cut(s) 23, 56
Hpy188III TCNNGA 4 cut(s) 82, 115, 220, 364
Hpy99I CGWCG 1 cut(s) 49
HpyAV CCTTC 2 cut(s) 169, 361
HpyCH4III ACNGT 2 cut(s) 19, 441
HpyCH4IV ACGT 2 cut(s) 156, 383
HpyCH4V TGCA 1 cut(s) 190
HpyF10VI GCNNNNNNNGC 2 cut(s) 314, 344
HpyF3I CTNAG 2 cut(s) 83, 149
HpySE526I ACGT 2 cut(s) 156, 383
Hsp92I GRCGYC 1 cut(s) 315
Hsp92II CATG 3 cut(s) 39, 133, 190
HspAI GCGC 1 cut(s) 315
KasI GGCGCC 1 cut(s) 314
KpnI GGTACC 1 cut(s) 286
LmnI GCTCC 2 cut(s) 146, 282
LpnPI CCDG 9 cut(s) 95, 224, 290, 293, 317, 361, 414, 424, 439
LweI GCATC 1 cut(s) 204
MaeII ACGT 2 cut(s) 156, 383
MaeIII GTNAC 4 cut(s) 13, 379, 388, 406
MboII GAAGA 3 cut(s) 208, 235, 322
MhlI GDGCHC 1 cut(s) 143
MluCI AATT 1 cut(s) 88
Mly113I GGCGCC 1 cut(s) 315
MlyI GAGTC 1 cut(s) 352
MnlI CCTC 5 cut(s) 155, 158, 242, 296, 364
MseI TTAA 2 cut(s) 26, 300
MslI CAYNNNNRTG 1 cut(s) 338
MspA1I CMGCKG 1 cut(s) 429
MspI CCGG 3 cut(s) 280, 401, 411
MspR9I CCNGG 1 cut(s) 305
MvaI CCWGG 1 cut(s) 305
MvnI CGCG 2 cut(s) 137, 207
MwoI GCNNNNNNNGC 2 cut(s) 314, 344
NarI GGCGCC 1 cut(s) 315
NlaIII CATG 3 cut(s) 39, 133, 190
NlaIV GGNNCC 2 cut(s) 284, 316
NmuCI GTSAC 3 cut(s) 13, 379, 406
NspI RCATGY 1 cut(s) 133
OliI CACNNNNGTG 1 cut(s) 338
PflMI CCANNNNNTGG 1 cut(s) 168
PleI GAGTC 1 cut(s) 352
PluTI GGCGCC 1 cut(s) 318
PpsI GAGTC 1 cut(s) 352
Ppu21I YACGTR 2 cut(s) 157, 384
PshBI ATTAAT 1 cut(s) 26
Psp6I CCWGG 1 cut(s) 303
PspFI CCCAGC 1 cut(s) 375
PspGI CCWGG 1 cut(s) 303
PspN4I GGNNCC 2 cut(s) 284, 316
RsaI GTAC 3 cut(s) 41, 104, 284
RsaNI GTAC 3 cut(s) 40, 103, 283
RseI CAYNNNNRTG 1 cut(s) 338
SaqAI TTAA 2 cut(s) 26, 300
SchI GAGTC 1 cut(s) 352
ScrFI CCNGG 1 cut(s) 305
SduI GDGCHC 1 cut(s) 143
SetI ASST 5 cut(s) 155, 159, 180, 288, 386
SfaNI GCATC 1 cut(s) 204
SfoI GGCGCC 1 cut(s) 316
SgrAI CRCCGGYG 1 cut(s) 410
SmiMI CAYNNNNRTG 1 cut(s) 338
SmlI CTYRAG 1 cut(s) 362
SmoI CTYRAG 1 cut(s) 362
SnaBI TACGTA 1 cut(s) 157
Sse9I AATT 1 cut(s) 88
SsiI CCGC 2 cut(s) 264, 429
SspDI GGCGCC 1 cut(s) 314
StyD4I CCNGG 1 cut(s) 303
TaaI ACNGT 2 cut(s) 19, 441
TaiI ACGT 2 cut(s) 159, 386
TaqI TCGA 2 cut(s) 5, 47
TaqII GACCGA 1 cut(s) 224
TasI AATT 1 cut(s) 88
Tru1I TTAA 2 cut(s) 26, 300
Tru9I TTAA 2 cut(s) 26, 300
TseFI GTSAC 3 cut(s) 13, 379, 406
Tsp45I GTSAC 3 cut(s) 13, 379, 406
TspDTI ATGAA 1 cut(s) 188
Van91I CCANNNNNTGG 1 cut(s) 168
VspI ATTAAT 1 cut(s) 26
XceI RCATGY 1 cut(s) 133
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.