MD07G1212700.v1.1

sugar phosphate phosphate translocator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0000810
Physical Location & Seq
Forward (+)
29067399 .. 29070574
3176 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1212700.v1.1.491

Sequence Viewer

Length: 924 bp
ATGAAGGGGAAAAGCCGCTTGTTCACGATCGGGCTCGTTACCGCCTGGTACTCGTCCAACATTGGGGTTTTGCTGCTGAACAAGTACTTGTTAAGCAACTATGGCTTCAAATACCCGATCTTCCTCACCATGTGCCACATGACGGCTTGCTCTCTGCTCAGTTACATCGCAATTGCTTGGATGAAGATGGTTCCGATGCAGACTATTCGATCCCGGGTTCAATTCTTGAAGATCACGGCGCTCAGCCTGGTGTTTTGTGTCTCCGTCGTGTTTGGGAACATTTCGCTGCGGTATTTGCCGGTGTCGTTTAACCAGGCTATTGGCGCCACCACGCCATTCTTCACTGCGGTTTTCGCCTACTTTATGACTCTCAAAAGGGAGGCTTGGCTCACGTATCTCACCCTCGTTCCTGTTGTTACAGGAGTCATCATTGCAAGTGGGGGTGAACCAAGTTTCCATTTATTTGGTTTCTTAATATGCGTAGCAGCAACCGCTGCCAGGGCGCTTAAATCGGTGCTACAAGGGATTTTGCTTTCTTCTGAAGGGGAGAAGCTGAATTCCATGAACCTCCTTCTGTATATGGCTCCGATAGCCGTCGTTTTCTTACTTCCGGCAACACTTATCATGGAAGAAAATGTTGTCGGTATAACACTAGCTCTTGCAAGAGACGATGTTAAGATCATATGGTACCTACTATTCAATTCGGCGCTGGCATATTTTGTAAATCTGACCAACTTTTTGGTCACAAAGCACACCAGTGCTCTGACTCTTCAGGTGCTAGGGAACGCTAAAGGAGCTGTAGCTGTGGTGGTCTCGATATTGATTTTTAGAAATCCAGTTTCCGTGACAGGAATGATGGGTTACACTCTTACAGTCTTTGGAGTGATCCTATACAGTGAAGCCAAGAAACGAAGCAAATCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPT

Protein Analysis

308

Amino Acids

33.76

Weight (kDa)

9.78

Isoelectric Point (pI)

31.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPT PF03151 12 - 299 2e-46 Triose-phosphate Transporter family
UAA PF08449 26 - 301 3e-14 UAA transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 687
AccB1I GGYRCC 2 cut(s) 323, 687
AciI CCGC 5 cut(s) 16, 42, 289, 347, 492
AclWI GGATC 2 cut(s) 204, 880
AcsI RAATTY 1 cut(s) 556
AcuI CTGAAG 2 cut(s) 561, 755
AcyI GRCGYC 1 cut(s) 324
AdeI CACNNNGTG 1 cut(s) 132
AfaI GTAC 3 cut(s) 50, 86, 689
AfiI CCNNNNNNNGG 3 cut(s) 63, 142, 498
AgsI TTSAA 4 cut(s) 109, 221, 229, 700
AjnI CCWGG 4 cut(s) 44, 246, 312, 497
AleI CACNNNNGTG 1 cut(s) 756
AloI GAACNNNNNNTCC 2 cut(s) 438, 470
AluBI AGCT 4 cut(s) 553, 656, 797, 803
AluI AGCT 4 cut(s) 553, 656, 797, 803
Alw21I GWGCWC 1 cut(s) 763
Alw26I GTCTC 3 cut(s) 265, 660, 817
AlwI GGATC 2 cut(s) 204, 880
Ama87I CYCGRG 1 cut(s) 213
ApeKI GCWGC 4 cut(s) 73, 286, 485, 494
ApoI RAATTY 1 cut(s) 556
ArsI GACNNNNNNTTYG 2 cut(s) 721, 753
Asp718I GGTACC 1 cut(s) 687
AspLEI GCGC 4 cut(s) 241, 326, 505, 709
AsuC2I CCSGG 2 cut(s) 214, 215
AsuHPI GGTGA 3 cut(s) 118, 391, 455
AvaI CYCGRG 1 cut(s) 213
BanI GGYRCC 2 cut(s) 323, 687
BanII GRGCYC 1 cut(s) 36
Bbv12I GWGCWC 1 cut(s) 763
BbvI GCAGC 4 cut(s) 60, 273, 481, 497
BccI CCATC 2 cut(s) 181, 850
BceAI ACGGC 3 cut(s) 159, 252, 578
BcgI CGANNNNNNTGC 2 cut(s) 188, 222
BciT130I CCWGG 4 cut(s) 46, 248, 314, 499
BcnI CCSGG 2 cut(s) 214, 215
BcoDI GTCTC 3 cut(s) 265, 660, 817
BfaI CTAG 2 cut(s) 653, 779
BfmI CTRYAG 1 cut(s) 798
BfoI RGCGCY 4 cut(s) 242, 327, 506, 710
BisI GCNGC 5 cut(s) 16, 74, 287, 486, 495
BlpI GCTNAGC 1 cut(s) 242
BlsI GCNGC 5 cut(s) 17, 75, 288, 487, 496
BmcAI AGTACT 1 cut(s) 86
Bme1390I CCNGG 6 cut(s) 46, 214, 215, 248, 314, 499
BmeT110I CYCGRG 1 cut(s) 213
BmiI GGNNCC 4 cut(s) 192, 325, 585, 689
BmrFI CCNGG 6 cut(s) 46, 214, 215, 248, 314, 499
BmsI GCATC 1 cut(s) 186
Bpu1102I GCTNAGC 1 cut(s) 242
BpuMI CCSGG 2 cut(s) 214, 215
BsaAI YACGTR 1 cut(s) 393
BsaHI GRCGYC 1 cut(s) 324
BsaI GGTCTC 1 cut(s) 817
BsaJI CCNNGG 2 cut(s) 213, 498
Bsc4I CCNNNNNNNGG 3 cut(s) 63, 142, 498
Bse118I RCCGGY 1 cut(s) 298
Bse1I ACTGG 2 cut(s) 756, 836
Bse3DI GCAATG 1 cut(s) 429
BseBI CCWGG 4 cut(s) 46, 248, 314, 499
BseDI CCNNGG 2 cut(s) 213, 498
BseGI GGATG 1 cut(s) 186
BseLI CCNNNNNNNGG 3 cut(s) 63, 142, 498
BseMI GCAATG 1 cut(s) 429
BseMII CTCAG 2 cut(s) 172, 256
BseNI ACTGG 2 cut(s) 756, 836
BseXI GCAGC 4 cut(s) 60, 273, 481, 497
Bsh1285I CGRYCG 1 cut(s) 30
BshNI GGYRCC 2 cut(s) 323, 687
BsiEI CGRYCG 1 cut(s) 30
BsiHKAI GWGCWC 1 cut(s) 763
BsiHKCI CYCGRG 1 cut(s) 213
BsiSI CCGG 3 cut(s) 214, 299, 611
BslI CCNNNNNNNGG 3 cut(s) 63, 142, 498
BsmAI GTCTC 3 cut(s) 265, 660, 817
BsmBI CGTCTC 1 cut(s) 660
Bso31I GGTCTC 1 cut(s) 817
BsoBI CYCGRG 1 cut(s) 213
Bsp1286I GDGCHC 2 cut(s) 36, 763
Bsp143I GATC 6 cut(s) 27, 117, 209, 231, 678, 885
Bsp1720I GCTNAGC 1 cut(s) 242
BspACI CCGC 5 cut(s) 16, 42, 289, 347, 492
BspCNI CTCAG 2 cut(s) 171, 255
BspLI GGNNCC 4 cut(s) 192, 325, 585, 689
BspPI GGATC 2 cut(s) 204, 880
BspT107I GGYRCC 2 cut(s) 323, 687
BspTNI GGTCTC 1 cut(s) 817
BsrDI GCAATG 1 cut(s) 429
BsrFI RCCGGY 1 cut(s) 298
BsrI ACTGG 2 cut(s) 756, 836
BssAI RCCGGY 1 cut(s) 298
BssECI CCNNGG 2 cut(s) 213, 498
BssMI GATC 6 cut(s) 27, 117, 209, 231, 678, 885
BssNI GRCGYC 1 cut(s) 324
Bst2UI CCWGG 4 cut(s) 46, 248, 314, 499
Bst4CI ACNGT 2 cut(s) 874, 896
Bst6I CTCTTC 1 cut(s) 774
BstACI GRCGYC 1 cut(s) 324
BstAPI GCANNNNNTGC 1 cut(s) 494
BstBAI YACGTR 1 cut(s) 393
BstC8I GCNNGC 2 cut(s) 148, 711
BstDEI CTNAG 2 cut(s) 158, 242
BstF5I GGATG 1 cut(s) 186
BstH2I RGCGCY 4 cut(s) 242, 327, 506, 710
BstHHI GCGC 4 cut(s) 241, 326, 505, 709
BstKTI GATC 6 cut(s) 30, 120, 212, 234, 681, 888
BstMAI GTCTC 3 cut(s) 265, 660, 817
BstMBI GATC 6 cut(s) 27, 117, 209, 231, 678, 885
BstMCI CGRYCG 1 cut(s) 30
BstMWI GCNNNNNNNGC 9 cut(s) 102, 295, 323, 353, 491, 494, 500, 590, 794
BstNI CCWGG 4 cut(s) 46, 248, 314, 499
BstSCI CCNGG 6 cut(s) 44, 212, 213, 246, 312, 497
BstSFI CTRYAG 1 cut(s) 798
BstV1I GCAGC 4 cut(s) 60, 273, 481, 497
BstXI CCANNNNNNTGG 3 cut(s) 320, 464, 739
BtgZI GCGATG 1 cut(s) 151
BtsCI GGATG 1 cut(s) 186
BtsI GCAGTG 1 cut(s) 342
BtsIMutI CAGTG 3 cut(s) 342, 763, 901
Cac8I GCNNGC 2 cut(s) 148, 711
CfoI GCGC 4 cut(s) 241, 326, 505, 709
Cfr10I RCCGGY 1 cut(s) 298
Cfr9I CCCGGG 1 cut(s) 213
Csp6I GTAC 3 cut(s) 49, 85, 688
CviAII CATG 4 cut(s) 130, 139, 562, 625
CviQI GTAC 3 cut(s) 49, 85, 688
DdeI CTNAG 2 cut(s) 158, 242
DinI GGCGCC 1 cut(s) 325
DpnI GATC 6 cut(s) 29, 119, 211, 233, 680, 887
DpnII GATC 6 cut(s) 27, 117, 209, 231, 678, 885
DraIII CACNNNGTG 1 cut(s) 132
Eam1104I CTCTTC 1 cut(s) 774
EarI CTCTTC 1 cut(s) 774
Eco24I GRGCYC 1 cut(s) 36
Eco31I GGTCTC 1 cut(s) 817
Eco57I CTGAAG 2 cut(s) 561, 755
Eco88I CYCGRG 1 cut(s) 213
EcoRI GAATTC 1 cut(s) 556
EcoRII CCWGG 4 cut(s) 44, 246, 312, 497
EcoT38I GRGCYC 1 cut(s) 36
EgeI GGCGCC 1 cut(s) 325
EheI GGCGCC 1 cut(s) 325
Esp3I CGTCTC 1 cut(s) 660
FaeI CATG 4 cut(s) 133, 142, 565, 628
FalI AAGNNNNNCTT 2 cut(s) 367, 399
FatI CATG 4 cut(s) 129, 138, 561, 624
FauNDI CATATG 1 cut(s) 683
Fnu4HI GCNGC 5 cut(s) 16, 74, 287, 486, 495
FokI GGATG 1 cut(s) 193
FriOI GRGCYC 1 cut(s) 36
Fsp4HI GCNGC 5 cut(s) 16, 74, 287, 486, 495
FspBI CTAG 2 cut(s) 653, 779
GlaI GCGC 4 cut(s) 240, 325, 504, 708
GluI GCNGC 5 cut(s) 16, 74, 287, 486, 495
HaeII RGCGCY 4 cut(s) 242, 327, 506, 710
HapII CCGG 3 cut(s) 214, 299, 611
HhaI GCGC 4 cut(s) 241, 326, 505, 709
Hin1I GRCGYC 1 cut(s) 324
Hin1II CATG 4 cut(s) 133, 142, 565, 628
Hin6I GCGC 4 cut(s) 239, 324, 503, 707
HinP1I GCGC 4 cut(s) 239, 324, 503, 707
HinfI GANTC 3 cut(s) 367, 423, 766
HpaII CCGG 3 cut(s) 214, 299, 611
HphI GGTGA 3 cut(s) 118, 391, 455
Hpy166II GTNNAC 2 cut(s) 24, 446
Hpy188I TCNGA 5 cut(s) 195, 541, 588, 729, 765
Hpy188III TCNNGA 3 cut(s) 25, 226, 814
Hpy8I GTNNAC 2 cut(s) 24, 446
Hpy99I CGWCG 2 cut(s) 269, 599
HpyAV CCTTC 2 cut(s) 536, 581
HpyCH4III ACNGT 2 cut(s) 874, 896
HpyCH4IV ACGT 1 cut(s) 392
HpyCH4V TGCA 3 cut(s) 199, 434, 662
HpyF10VI GCNNNNNNNGC 9 cut(s) 102, 295, 323, 353, 491, 494, 500, 590, 794
HpyF3I CTNAG 2 cut(s) 158, 242
HpySE526I ACGT 1 cut(s) 392
Hsp92I GRCGYC 1 cut(s) 324
Hsp92II CATG 4 cut(s) 133, 142, 565, 628
HspAI GCGC 4 cut(s) 239, 324, 503, 707
KasI GGCGCC 1 cut(s) 323
KpnI GGTACC 1 cut(s) 691
Kzo9I GATC 6 cut(s) 27, 117, 209, 231, 678, 885
LmnI GCTCC 2 cut(s) 589, 794
Lsp1109I GCAGC 4 cut(s) 60, 273, 481, 497
LweI GCATC 1 cut(s) 186
MaeI CTAG 2 cut(s) 653, 779
MaeII ACGT 1 cut(s) 392
MaeIII GTNAC 6 cut(s) 37, 161, 415, 742, 844, 860
MalI GATC 6 cut(s) 29, 119, 211, 233, 680, 887
MboI GATC 6 cut(s) 27, 117, 209, 231, 678, 885
MboII GAAGA 7 cut(s) 112, 196, 241, 331, 528, 641, 761
MfeI CAATTG 1 cut(s) 171
MhlI GDGCHC 2 cut(s) 36, 763
MluCI AATT 4 cut(s) 171, 221, 556, 700
Mly113I GGCGCC 1 cut(s) 324
MlyI GAGTC 3 cut(s) 361, 432, 760
MmeI TCCRAC 1 cut(s) 81
MnlI CCTC 4 cut(s) 134, 373, 413, 578
MseI TTAA 5 cut(s) 92, 309, 473, 507, 675
MslI CAYNNNNRTG 1 cut(s) 756
MspA1I CMGCKG 1 cut(s) 494
MspI CCGG 3 cut(s) 214, 299, 611
MspR9I CCNGG 6 cut(s) 46, 214, 215, 248, 314, 499
MunI CAATTG 1 cut(s) 171
MvaI CCWGG 4 cut(s) 46, 248, 314, 499
MwoI GCNNNNNNNGC 9 cut(s) 102, 295, 323, 353, 491, 494, 500, 590, 794
NarI GGCGCC 1 cut(s) 324
NciI CCSGG 2 cut(s) 214, 215
NdeI CATATG 1 cut(s) 683
NdeII GATC 6 cut(s) 27, 117, 209, 231, 678, 885
NlaIII CATG 4 cut(s) 133, 142, 565, 628
NlaIV GGNNCC 4 cut(s) 192, 325, 585, 689
NmuCI GTSAC 2 cut(s) 742, 844
OliI CACNNNNGTG 1 cut(s) 756
PkrI GCNGC 5 cut(s) 17, 75, 288, 487, 496
Ple19I CGATCG 1 cut(s) 30
PleI GAGTC 3 cut(s) 361, 431, 760
PluTI GGCGCC 1 cut(s) 327
PpsI GAGTC 3 cut(s) 361, 431, 760
Ppu21I YACGTR 1 cut(s) 393
Psp6I CCWGG 4 cut(s) 44, 246, 312, 497
PspGI CCWGG 4 cut(s) 44, 246, 312, 497
PspN4I GGNNCC 4 cut(s) 192, 325, 585, 689
PvuI CGATCG 1 cut(s) 30
RsaI GTAC 3 cut(s) 50, 86, 689
RsaNI GTAC 3 cut(s) 49, 85, 688
RseI CAYNNNNRTG 1 cut(s) 756
SaqAI TTAA 5 cut(s) 92, 309, 473, 507, 675
SatI GCNGC 5 cut(s) 16, 74, 287, 486, 495
Sau3AI GATC 6 cut(s) 27, 117, 209, 231, 678, 885
ScaI AGTACT 1 cut(s) 86
SchI GAGTC 3 cut(s) 361, 432, 760
ScrFI CCNGG 6 cut(s) 46, 214, 215, 248, 314, 499
SduI GDGCHC 2 cut(s) 36, 763
SetI ASST 8 cut(s) 395, 555, 570, 658, 693, 777, 799, 805
SfaNI GCATC 1 cut(s) 186
SfcI CTRYAG 1 cut(s) 798
SfoI GGCGCC 1 cut(s) 325
SmaI CCCGGG 1 cut(s) 215
SmiMI CAYNNNNRTG 1 cut(s) 756
Sse9I AATT 4 cut(s) 171, 221, 556, 700
SsiI CCGC 5 cut(s) 16, 42, 289, 347, 492
SspDI GGCGCC 1 cut(s) 323
SspMI CTAG 2 cut(s) 653, 779
StyD4I CCNGG 6 cut(s) 44, 212, 213, 246, 312, 497
TaaI ACNGT 2 cut(s) 874, 896
TaiI ACGT 1 cut(s) 395
TaqI TCGA 2 cut(s) 208, 815
TasI AATT 4 cut(s) 171, 221, 556, 700
TatI WGTACW 1 cut(s) 84
TauI GCSGC 1 cut(s) 18
Tru1I TTAA 5 cut(s) 92, 309, 473, 507, 675
Tru9I TTAA 5 cut(s) 92, 309, 473, 507, 675
TscAI CASTG 3 cut(s) 349, 763, 901
TseFI GTSAC 2 cut(s) 742, 844
TseI GCWGC 4 cut(s) 73, 286, 485, 494
Tsp45I GTSAC 2 cut(s) 742, 844
TspDTI ATGAA 3 cut(s) 17, 197, 578
TspGWI ACGGA 2 cut(s) 253, 832
TspMI CCCGGG 1 cut(s) 213
TspRI CASTG 3 cut(s) 349, 763, 901
XapI RAATTY 1 cut(s) 556
XmaI CCCGGG 1 cut(s) 213
XspI CTAG 2 cut(s) 653, 779
ZrmI AGTACT 1 cut(s) 86
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.