pycom12g15080

sugar phosphate phosphate translocator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
OG0000810
Physical Location & Seq
Forward (+)
17480222 .. 17481628
1407 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12g15080.1

Sequence Viewer

Length: 804 bp
ATGACGATGTCTGCGCCGATCGAATGGACGACGGTCTGGATGGTCGCCGCCTGGTACGGCTCCAACATCGGCGTCCTGCTTCTAAACAAGTACCTGCTCACGAACTACGGGTTCAGGTTTCCGATTTTTCTGACGCTCTGCCACATGACGGCGTGTTCGGTGTTCAGCTACGTCGCCATAGCTGTGATGAAGGTGGCCCTACTGCAGAGCCTGAAGTCAAAGGTTCAGTTCGCCAAGATCGCCGGGCTCAGTGTCGTTTTCTGCTTCTCCGTCGTTTGCGGTAACGTGTCGTTGAGGTACATTCCCGTGTCGTTTAATCAGGCCGTCAGCGCCACCACCCCGTTTTTCACCGCCGTTTTTGCTTTCTTGATCATCAAGAAGAGGGAGGCTTGGCTTACTTATGCCGCCCTCATTCCTGTTGTTGCAGGTGTCATCGTTGCTAGTGGGGGCGAACCAAGCTTCCAATTTTTCGGGTTTATTATGTGTATTACAGCTACATCTGCAAGGGCATTCAAATCGGTTCTTCAAGAAATTTTGCTTTCCTCTGACGGGGAAAAACTGGACTCTATGAACCTGCTGTTGTACATGGCACCATTAGCCGTGGCGTTCTTACTTCCTGCAACACTGTTGATGGAGAAAAATGTGGTTGGAATCACAATCGAACTTGCTCGAAAAGATATCAAACTTATTTGGTACCTGTTCTTCAATTCTTCAATGGCTTATTTTGTTAACTTGACCAATTTCTTGGTCACCAAGCATACAAGTGCTTTGACCCTTCAGGTAATAATTGTGTTCACACAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPT

Protein Analysis

268

Amino Acids

29.56

Weight (kDa)

9.3

Isoelectric Point (pI)

32.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPT PF03151 13 - 261 2.1e-35 Triose-phosphate Transporter family
UAA PF08449 27 - 263 2.8e-11 UAA transporter family
EamA PF00892 41 - 148 4.1e-06 EamA-like transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 416
Acc36I ACCTGC 3 cut(s) 102, 416, 582
Acc65I GGTACC 1 cut(s) 693
AccB1I GGYRCC 2 cut(s) 589, 693
AciI CCGC 4 cut(s) 48, 279, 351, 405
AcsI RAATTY 1 cut(s) 531
AcuI CTGAAG 2 cut(s) 233, 761
AcyI GRCGYC 1 cut(s) 72
AfaI GTAC 5 cut(s) 56, 92, 299, 584, 695
AfiI CCNNNNNNNGG 2 cut(s) 148, 549
AflIII ACRYGT 1 cut(s) 285
AgsI TTSAA 4 cut(s) 514, 527, 706, 714
AjnI CCWGG 1 cut(s) 50
AloI GAACNNNNNNTCC 2 cut(s) 444, 476
AluBI AGCT 4 cut(s) 168, 182, 459, 494
AluI AGCT 4 cut(s) 168, 182, 459, 494
AlwNI CAGNNNCTG 1 cut(s) 211
AoxI GGCC 2 cut(s) 195, 321
ApoI RAATTY 1 cut(s) 531
ArsI GACNNNNNNTTYG 2 cut(s) 139, 171
Asp718I GGTACC 1 cut(s) 693
AspLEI GCGC 2 cut(s) 16, 332
AspS9I GGNCC 1 cut(s) 196
AsuC2I CCSGG 1 cut(s) 244
AsuHPI GGTGA 2 cut(s) 340, 742
BanI GGYRCC 2 cut(s) 589, 693
BanII GRGCYC 1 cut(s) 249
BarI GAAGNNNNNNTAC 2 cut(s) 686, 718
BccI CCATC 2 cut(s) 34, 625
BceAI ACGGC 5 cut(s) 73, 165, 308, 338, 584
BcgI CGANNNNNNTGC 2 cut(s) 498, 532
BciT130I CCWGG 1 cut(s) 52
BclI TGATCA 1 cut(s) 369
BcnI CCSGG 1 cut(s) 244
BfaI CTAG 1 cut(s) 441
BfmI CTRYAG 1 cut(s) 203
BfoI RGCGCY 1 cut(s) 333
BfuAI ACCTGC 3 cut(s) 102, 416, 582
BisI GCNGC 2 cut(s) 48, 405
BlsI GCNGC 2 cut(s) 49, 406
Bme1390I CCNGG 2 cut(s) 52, 244
BmgT120I GGNCC 1 cut(s) 196
BmiI GGNNCC 3 cut(s) 61, 591, 695
BmrFI CCNGG 2 cut(s) 52, 244
BoxI GACNNNNGTC 1 cut(s) 32
BpuMI CCSGG 1 cut(s) 244
BsaHI GRCGYC 1 cut(s) 72
BsaJI CCNNGG 1 cut(s) 600
Bsc4I CCNNNNNNNGG 2 cut(s) 148, 549
Bse1I ACTGG 1 cut(s) 564
BseBI CCWGG 1 cut(s) 52
BseDI CCNNGG 1 cut(s) 600
BseGI GGATG 1 cut(s) 45
BseLI CCNNNNNNNGG 2 cut(s) 148, 549
BseMII CTCAG 1 cut(s) 262
BseNI ACTGG 1 cut(s) 564
Bsh1285I CGRYCG 1 cut(s) 21
BshFI GGCC 2 cut(s) 197, 323
BshNI GGYRCC 2 cut(s) 589, 693
BsiEI CGRYCG 1 cut(s) 21
BsiSI CCGG 1 cut(s) 243
BslI CCNNNNNNNGG 2 cut(s) 148, 549
BsmI GAATGC 1 cut(s) 509
BsnI GGCC 2 cut(s) 197, 323
Bsp1286I GDGCHC 1 cut(s) 249
Bsp1407I TGTACA 1 cut(s) 582
Bsp143I GATC 3 cut(s) 18, 237, 369
BspACI CCGC 4 cut(s) 48, 279, 351, 405
BspANI GGCC 2 cut(s) 197, 323
BspCNI CTCAG 1 cut(s) 261
BspLI GGNNCC 3 cut(s) 61, 591, 695
BspMAI CTGCAG 1 cut(s) 207
BspMI ACCTGC 3 cut(s) 102, 416, 582
BspT107I GGYRCC 2 cut(s) 589, 693
BsrGI TGTACA 1 cut(s) 582
BsrI ACTGG 1 cut(s) 564
BssECI CCNNGG 1 cut(s) 600
BssMI GATC 3 cut(s) 18, 237, 369
BssNI GRCGYC 1 cut(s) 72
Bst2UI CCWGG 1 cut(s) 52
Bst4CI ACNGT 2 cut(s) 34, 627
Bst6I CTCTTC 1 cut(s) 374
BstACI GRCGYC 1 cut(s) 72
BstAUI TGTACA 1 cut(s) 582
BstDEI CTNAG 1 cut(s) 248
BstDSI CCRYGG 1 cut(s) 600
BstEII GGTNACC 1 cut(s) 748
BstF5I GGATG 1 cut(s) 45
BstH2I RGCGCY 1 cut(s) 333
BstHHI GCGC 2 cut(s) 16, 332
BstKTI GATC 3 cut(s) 21, 240, 372
BstMBI GATC 3 cut(s) 18, 237, 369
BstMCI CGRYCG 1 cut(s) 21
BstMWI GCNNNNNNNGC 6 cut(s) 239, 329, 359, 456, 500, 596
BstNI CCWGG 1 cut(s) 52
BstPAI GACNNNNGTC 1 cut(s) 32
BstPI GGTNACC 1 cut(s) 748
BstSCI CCNGG 2 cut(s) 50, 242
BstSFI CTRYAG 1 cut(s) 203
BstXI CCANNNNNNTGG 1 cut(s) 745
BsuRI GGCC 2 cut(s) 197, 323
BtgI CCRYGG 1 cut(s) 600
BtsCI GGATG 1 cut(s) 45
BtsIMutI CAGTG 2 cut(s) 256, 623
BveI ACCTGC 3 cut(s) 102, 416, 582
CaiI CAGNNNCTG 1 cut(s) 211
CfoI GCGC 2 cut(s) 16, 332
Cfr13I GGNCC 1 cut(s) 196
CseI GACGC 2 cut(s) 61, 142
Csp6I GTAC 5 cut(s) 55, 91, 298, 583, 694
CviAII CATG 2 cut(s) 145, 586
CviQI GTAC 5 cut(s) 55, 91, 298, 583, 694
DdeI CTNAG 1 cut(s) 248
DpnI GATC 3 cut(s) 20, 239, 371
DpnII GATC 3 cut(s) 18, 237, 369
Eam1104I CTCTTC 1 cut(s) 374
EarI CTCTTC 1 cut(s) 374
Eco24I GRGCYC 1 cut(s) 249
Eco32I GATATC 1 cut(s) 679
Eco57I CTGAAG 2 cut(s) 233, 761
Eco91I GGTNACC 1 cut(s) 748
EcoO65I GGTNACC 1 cut(s) 748
EcoRII CCWGG 1 cut(s) 50
EcoRV GATATC 1 cut(s) 679
EcoT38I GRGCYC 1 cut(s) 249
FaeI CATG 2 cut(s) 148, 589
FaiI YATR 7 cut(s) 146, 179, 402, 482, 569, 587, 759
FatI CATG 2 cut(s) 144, 585
FbaI TGATCA 1 cut(s) 369
Fnu4HI GCNGC 2 cut(s) 48, 405
FokI GGATG 1 cut(s) 52
FriOI GRGCYC 1 cut(s) 249
Fsp4HI GCNGC 2 cut(s) 48, 405
FspBI CTAG 1 cut(s) 441
GlaI GCGC 2 cut(s) 15, 331
GluI GCNGC 2 cut(s) 48, 405
HaeII RGCGCY 1 cut(s) 333
HaeIII GGCC 2 cut(s) 197, 323
HapII CCGG 1 cut(s) 243
HgaI GACGC 2 cut(s) 61, 142
HhaI GCGC 2 cut(s) 16, 332
Hin1I GRCGYC 1 cut(s) 72
Hin1II CATG 2 cut(s) 148, 589
Hin6I GCGC 2 cut(s) 14, 330
HinP1I GCGC 2 cut(s) 14, 330
HincII GTYRAC 1 cut(s) 730
HindII GTYRAC 1 cut(s) 730
HindIII AAGCTT 1 cut(s) 457
HinfI GANTC 2 cut(s) 563, 651
HpaI GTTAAC 1 cut(s) 730
HpaII CCGG 1 cut(s) 243
HphI GGTGA 2 cut(s) 340, 742
Hpy166II GTNNAC 2 cut(s) 730, 795
Hpy188I TCNGA 3 cut(s) 123, 132, 547
Hpy188III TCNNGA 5 cut(s) 37, 100, 367, 376, 527
Hpy8I GTNNAC 2 cut(s) 730, 795
Hpy99I CGWCG 3 cut(s) 34, 176, 275
HpyAV CCTTC 2 cut(s) 184, 785
HpyCH4III ACNGT 2 cut(s) 34, 627
HpyCH4IV ACGT 2 cut(s) 171, 285
HpyCH4V TGCA 4 cut(s) 205, 425, 503, 620
HpyF10VI GCNNNNNNNGC 6 cut(s) 239, 329, 359, 456, 500, 596
HpyF3I CTNAG 1 cut(s) 248
HpySE526I ACGT 2 cut(s) 171, 285
Hsp92I GRCGYC 1 cut(s) 72
Hsp92II CATG 2 cut(s) 148, 589
HspAI GCGC 2 cut(s) 14, 330
KpnI GGTACC 1 cut(s) 697
Ksp22I TGATCA 1 cut(s) 369
KspAI GTTAAC 1 cut(s) 730
Kzo9I GATC 3 cut(s) 18, 237, 369
LmnI GCTCC 1 cut(s) 65
MaeI CTAG 1 cut(s) 441
MaeII ACGT 2 cut(s) 171, 285
MaeIII GTNAC 2 cut(s) 281, 748
MalI GATC 3 cut(s) 20, 239, 371
MboI GATC 3 cut(s) 18, 237, 369
MboII GAAGA 4 cut(s) 391, 515, 694, 702
MhlI GDGCHC 1 cut(s) 249
MluCI AATT 5 cut(s) 464, 531, 706, 739, 786
MlyI GAGTC 1 cut(s) 557
MmeI TCCRAC 2 cut(s) 87, 628
MnlI CCTC 5 cut(s) 288, 375, 379, 419, 553
MseI TTAA 2 cut(s) 315, 729
MslI CAYNNNNRTG 3 cut(s) 182, 305, 762
MspI CCGG 1 cut(s) 243
MspR9I CCNGG 2 cut(s) 52, 244
Mva1269I GAATGC 1 cut(s) 509
MvaI CCWGG 1 cut(s) 52
MwoI GCNNNNNNNGC 6 cut(s) 239, 329, 359, 456, 500, 596
NciI CCSGG 1 cut(s) 244
NdeII GATC 3 cut(s) 18, 237, 369
NlaIII CATG 2 cut(s) 148, 589
NlaIV GGNNCC 3 cut(s) 61, 591, 695
NmuCI GTSAC 1 cut(s) 748
PaqCI CACCTGC 1 cut(s) 416
PctI GAATGC 1 cut(s) 509
PfeI GAWTC 1 cut(s) 651
PflFI GACNNNGTC 1 cut(s) 7
PkrI GCNGC 2 cut(s) 49, 406
Ple19I CGATCG 1 cut(s) 21
PleI GAGTC 1 cut(s) 557
PpsI GAGTC 1 cut(s) 557
PshAI GACNNNNGTC 1 cut(s) 32
Psp6I CCWGG 1 cut(s) 50
PspEI GGTNACC 1 cut(s) 748
PspGI CCWGG 1 cut(s) 50
PspN4I GGNNCC 3 cut(s) 61, 591, 695
PspPI GGNCC 1 cut(s) 196
PstI CTGCAG 1 cut(s) 207
PstNI CAGNNNCTG 1 cut(s) 211
PsyI GACNNNGTC 1 cut(s) 7
PvuI CGATCG 1 cut(s) 21
RsaI GTAC 5 cut(s) 56, 92, 299, 584, 695
RsaNI GTAC 5 cut(s) 55, 91, 298, 583, 694
RseI CAYNNNNRTG 3 cut(s) 182, 305, 762
SaqAI TTAA 2 cut(s) 315, 729
SatI GCNGC 2 cut(s) 48, 405
Sau3AI GATC 3 cut(s) 18, 237, 369
Sau96I GGNCC 1 cut(s) 196
SchI GAGTC 1 cut(s) 557
ScrFI CCNGG 2 cut(s) 52, 244
SduI GDGCHC 1 cut(s) 249
SfcI CTRYAG 1 cut(s) 203
SmiMI CAYNNNNRTG 3 cut(s) 182, 305, 762
Sse9I AATT 5 cut(s) 464, 531, 706, 739, 786
SsiI CCGC 4 cut(s) 48, 279, 351, 405
SspMI CTAG 1 cut(s) 441
StyD4I CCNGG 2 cut(s) 50, 242
TaaI ACNGT 2 cut(s) 34, 627
TaiI ACGT 2 cut(s) 174, 288
TaqI TCGA 3 cut(s) 21, 660, 670
TasI AATT 5 cut(s) 464, 531, 706, 739, 786
TatI WGTACW 1 cut(s) 582
TauI GCSGC 2 cut(s) 50, 407
TfiI GAWTC 1 cut(s) 651
Tru1I TTAA 2 cut(s) 315, 729
Tru9I TTAA 2 cut(s) 315, 729
TscAI CASTG 2 cut(s) 256, 630
TseFI GTSAC 1 cut(s) 748
Tsp45I GTSAC 1 cut(s) 748
TspDTI ATGAA 2 cut(s) 203, 584
TspGWI ACGGA 1 cut(s) 259
TspRI CASTG 2 cut(s) 256, 630
Tth111I GACNNNGTC 1 cut(s) 7
XapI RAATTY 1 cut(s) 531
XspI CTAG 1 cut(s) 441
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.