Rroxscaffold_6G00416050

Ribosomal protein L35Ae

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
Physical Location & Seq
Forward (+)
38132774 .. 38135661
2888 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00416050.1

Sequence Viewer

Length: 942 bp
ATGACCGCCGCAGACCCGAGTCCAATCCCATGGCCCACGATCGGGTGGGTCGTTTCGTGGTACGGCTCCAACATCGGAGTCCTGCTTCTGAACAAGTATTTGCTGACCAATTACGGGTTCAAGTACCCGATTTTTCTGACGCTGTGTCACATGACGGCGTGTAGTGTTCTGAGCTACGTGGCCATAGCGTTGATGAAGGTCGCTCCTATGCAGAGCGTGAGGTCCAAGGTTCAGCTGGCAAAGATCGCGGGGCTGAGTGTCGTTTTTTGTTTTTCGGTGGTTTGTGGGAACGTGTCGTTGAGGTACCTTCCGGTGTCGTTTAACCAGGCGGTTGGCGCCACCACGCCGTTTTTTACCGCGGTTTTGGCGTTTTTGATGATCAAGAAGAGGGAGGAGTGGGTTACGTACAGCACCCTCATTCCGGTCGTTGCCGGAGTCATCATTGCTAGTGGGGGTGAACCAAGCTTCCAGCTCTTTGGGTTTATTATGTGTGTTACTGCTACGGCTGCCAGGGCATTCAAGTCGGTGCTTCAACAAATTTTGCTTTCTTCTGATGGGGAAAAGCTGAACTCCATGAACTTGCTGTTATACATGGCACCAATAGCTGTAATTTGTTTGCTCCCTGCAACAATATTGATGGAGAAAGATGTTGTTGGGATCACACTAGATCTTGCCAGAAAAGATATCAAACTTATTTGGTACCTCTTGTTCAATTCTTCTCTGGCTTATTTTGTGAACTTGACCAATTTCTTGGTCACCAAACACACAAGCGCTTTGACCCTCCAGGTATTGGGAAATGCAAAGGGAGCTGTTGCTGTAGTTGTTTCAATTATGATATTTAAGAATCCTATTTCATTCATGGGGATGTTAGGCTATGGACTCACTGTTGTTGGAGTCATTTTGTACAGCGAAGCCAAGAAGAGGTATACAGTTAAAAATTGA

Protein Analysis

313

Amino Acids

34.16

Weight (kDa)

9.5

Isoelectric Point (pI)

25.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPT PF03151 17 - 303 7e-48 Triose-phosphate Transporter family
UAA PF08449 33 - 305 6.6e-19 UAA transporter family
EamA PF00892 43 - 150 8.5e-06 EamA-like transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 303, 699
AccB1I GGYRCC 4 cut(s) 303, 335, 595, 699
AccB7I CCANNNNNTGG 1 cut(s) 790
AccI GTMKAC 1 cut(s) 926
AccII CGCG 2 cut(s) 248, 359
AciI CCGC 6 cut(s) 6, 9, 248, 329, 357, 359
AclWI GGATC 1 cut(s) 665
AcoI YGGCCR 1 cut(s) 180
AcsI RAATTY 1 cut(s) 537
AcyI GRCGYC 1 cut(s) 336
AfaI GTAC 6 cut(s) 62, 125, 305, 407, 701, 905
AfeI AGCGCT 1 cut(s) 772
AfiI CCNNNNNNNGG 6 cut(s) 41, 42, 114, 421, 790, 921
AflIII ACRYGT 1 cut(s) 291
AgsI TTSAA 5 cut(s) 121, 520, 533, 712, 828
AhdI GACNNNNNGTC 1 cut(s) 144
AjnI CCWGG 3 cut(s) 324, 509, 783
AjuI GAANNNNNNNTTGG 2 cut(s) 101, 133
AloI GAACNNNNNNTCC 2 cut(s) 450, 482
AluBI AGCT 7 cut(s) 174, 235, 465, 472, 565, 605, 809
AluI AGCT 7 cut(s) 174, 235, 465, 472, 565, 605, 809
AlwI GGATC 1 cut(s) 665
Ama87I CYCGRG 1 cut(s) 16
Aor51HI AGCGCT 1 cut(s) 772
AoxI GGCC 2 cut(s) 32, 180
ApeKI GCWGC 1 cut(s) 506
ApoI RAATTY 1 cut(s) 537
Asp718I GGTACC 2 cut(s) 303, 699
AspLEI GCGC 2 cut(s) 338, 773
AspS9I GGNCC 2 cut(s) 33, 222
AsuHPI GGTGA 2 cut(s) 467, 748
AvaI CYCGRG 1 cut(s) 16
AvaII GGWCC 1 cut(s) 222
BalI TGGCCA 1 cut(s) 182
BanI GGYRCC 4 cut(s) 303, 335, 595, 699
BbvI GCAGC 1 cut(s) 493
BccI CCATC 2 cut(s) 548, 631
BceAI ACGGC 4 cut(s) 79, 171, 331, 519
BcgI CGANNNNNNTGC 2 cut(s) 504, 538
BciT130I CCWGG 3 cut(s) 326, 511, 785
BclI TGATCA 1 cut(s) 378
BfaI CTAG 2 cut(s) 447, 665
BfmI CTRYAG 1 cut(s) 816
BfoI RGCGCY 2 cut(s) 339, 774
BglII AGATCT 1 cut(s) 667
BisI GCNGC 2 cut(s) 9, 507
BlsI GCNGC 2 cut(s) 10, 508
Bme1390I CCNGG 3 cut(s) 326, 511, 785
Bme18I GGWCC 1 cut(s) 222
BmeRI GACNNNNNGTC 1 cut(s) 144
BmeT110I CYCGRG 1 cut(s) 16
BmgT120I GGNCC 2 cut(s) 33, 222
BmiI GGNNCC 5 cut(s) 67, 305, 337, 597, 701
BmrFI CCNGG 3 cut(s) 326, 511, 785
BoxI GACNNNNGTC 1 cut(s) 18
BpmI CTGGAG 1 cut(s) 767
BsaAI YACGTR 2 cut(s) 178, 405
BsaHI GRCGYC 1 cut(s) 336
BsaJI CCNNGG 4 cut(s) 29, 225, 357, 510
BsaWI WCCGGW 2 cut(s) 310, 421
Bsc4I CCNNNNNNNGG 6 cut(s) 41, 42, 114, 421, 790, 921
Bse3DI GCAATG 1 cut(s) 441
BseBI CCWGG 3 cut(s) 326, 511, 785
BseDI CCNNGG 4 cut(s) 29, 225, 357, 510
BseGI GGATG 1 cut(s) 870
BseLI CCNNNNNNNGG 6 cut(s) 41, 42, 114, 421, 790, 921
BseMI GCAATG 1 cut(s) 441
BseMII CTCAG 2 cut(s) 161, 245
BseRI GAGGAG 1 cut(s) 407
BseXI GCAGC 1 cut(s) 493
Bsh1236I CGCG 2 cut(s) 248, 359
Bsh1285I CGRYCG 2 cut(s) 42, 426
BshFI GGCC 2 cut(s) 34, 182
BshNI GGYRCC 4 cut(s) 303, 335, 595, 699
BsiEI CGRYCG 2 cut(s) 42, 426
BsiHKCI CYCGRG 1 cut(s) 16
BsiSI CCGG 3 cut(s) 311, 422, 432
BslI CCNNNNNNNGG 6 cut(s) 41, 42, 114, 421, 790, 921
BsmI GAATGC 1 cut(s) 515
BsnI GGCC 2 cut(s) 34, 182
BsoBI CYCGRG 1 cut(s) 16
Bsp1407I TGTACA 1 cut(s) 903
Bsp143I GATC 5 cut(s) 39, 243, 378, 657, 667
Bsp19I CCATGG 1 cut(s) 29
BspACI CCGC 6 cut(s) 6, 9, 248, 329, 357, 359
BspANI GGCC 2 cut(s) 34, 182
BspCNI CTCAG 2 cut(s) 162, 246
BspFNI CGCG 2 cut(s) 248, 359
BspLI GGNNCC 5 cut(s) 67, 305, 337, 597, 701
BspPI GGATC 1 cut(s) 665
BspT107I GGYRCC 4 cut(s) 303, 335, 595, 699
BsrDI GCAATG 1 cut(s) 441
BsrGI TGTACA 1 cut(s) 903
BssECI CCNNGG 4 cut(s) 29, 225, 357, 510
BssMI GATC 5 cut(s) 39, 243, 378, 657, 667
BssNAI GTATAC 1 cut(s) 927
BssNI GRCGYC 1 cut(s) 336
BssT1I CCWWGG 2 cut(s) 29, 225
Bst1107I GTATAC 1 cut(s) 927
Bst2UI CCWGG 3 cut(s) 326, 511, 785
Bst4CI ACNGT 2 cut(s) 886, 931
Bst6I CTCTTC 2 cut(s) 380, 914
BstACI GRCGYC 1 cut(s) 336
BstAUI TGTACA 1 cut(s) 903
BstBAI YACGTR 2 cut(s) 178, 405
BstC8I GCNNGC 1 cut(s) 237
BstDEI CTNAG 2 cut(s) 170, 254
BstDSI CCRYGG 2 cut(s) 29, 357
BstEII GGTNACC 1 cut(s) 754
BstF5I GGATG 1 cut(s) 870
BstFNI CGCG 2 cut(s) 248, 359
BstH2I RGCGCY 2 cut(s) 339, 774
BstHHI GCGC 2 cut(s) 338, 773
BstKTI GATC 5 cut(s) 42, 246, 381, 660, 670
BstMBI GATC 5 cut(s) 39, 243, 378, 657, 667
BstMCI CGRYCG 2 cut(s) 42, 426
BstMWI GCNNNNNNNGC 7 cut(s) 245, 335, 365, 506, 512, 602, 806
BstNI CCWGG 3 cut(s) 326, 511, 785
BstPAI GACNNNNGTC 1 cut(s) 18
BstPI GGTNACC 1 cut(s) 754
BstSCI CCNGG 3 cut(s) 324, 509, 783
BstSFI CTRYAG 1 cut(s) 816
BstSNI TACGTA 1 cut(s) 405
BstUI CGCG 2 cut(s) 248, 359
BstV1I GCAGC 1 cut(s) 493
BstX2I RGATCY 1 cut(s) 667
BstXI CCANNNNNNTGG 4 cut(s) 30, 332, 476, 751
BstYI RGATCY 1 cut(s) 667
BstZ17I GTATAC 1 cut(s) 927
BsuRI GGCC 2 cut(s) 34, 182
BtgI CCRYGG 2 cut(s) 29, 357
BtsCI GGATG 1 cut(s) 870
BtsIMutI CAGTG 1 cut(s) 882
Cac8I GCNNGC 1 cut(s) 237
CfoI GCGC 2 cut(s) 338, 773
Cfr13I GGNCC 2 cut(s) 33, 222
Cfr42I CCGCGG 1 cut(s) 360
CseI GACGC 1 cut(s) 148
Csp6I GTAC 6 cut(s) 61, 124, 304, 406, 700, 904
CviAII CATG 5 cut(s) 30, 151, 574, 592, 859
CviQI GTAC 6 cut(s) 61, 124, 304, 406, 700, 904
DdeI CTNAG 2 cut(s) 170, 254
DinI GGCGCC 1 cut(s) 337
DpnI GATC 5 cut(s) 41, 245, 380, 659, 669
DpnII GATC 5 cut(s) 39, 243, 378, 657, 667
DriI GACNNNNNGTC 1 cut(s) 144
EaeI YGGCCR 1 cut(s) 180
Eam1104I CTCTTC 2 cut(s) 380, 914
Eam1105I GACNNNNNGTC 1 cut(s) 144
EarI CTCTTC 2 cut(s) 380, 914
Eco105I TACGTA 1 cut(s) 405
Eco130I CCWWGG 2 cut(s) 29, 225
Eco32I GATATC 1 cut(s) 685
Eco47I GGWCC 1 cut(s) 222
Eco47III AGCGCT 1 cut(s) 772
Eco88I CYCGRG 1 cut(s) 16
Eco91I GGTNACC 1 cut(s) 754
EcoO65I GGTNACC 1 cut(s) 754
EcoRII CCWGG 3 cut(s) 324, 509, 783
EcoRV GATATC 1 cut(s) 685
EcoT14I CCWWGG 2 cut(s) 29, 225
EgeI GGCGCC 1 cut(s) 337
EheI GGCGCC 1 cut(s) 337
ErhI CCWWGG 2 cut(s) 29, 225
FaeI CATG 5 cut(s) 33, 154, 577, 595, 862
FatI CATG 5 cut(s) 29, 150, 573, 591, 858
FauI CCCGC 1 cut(s) 241
FbaI TGATCA 1 cut(s) 378
FblI GTMKAC 1 cut(s) 926
Fnu4HI GCNGC 2 cut(s) 9, 507
FokI GGATG 1 cut(s) 877
Fsp4HI GCNGC 2 cut(s) 9, 507
FspBI CTAG 2 cut(s) 447, 665
GlaI GCGC 2 cut(s) 337, 772
GluI GCNGC 2 cut(s) 9, 507
GsuI CTGGAG 1 cut(s) 767
HaeII RGCGCY 2 cut(s) 339, 774
HaeIII GGCC 2 cut(s) 34, 182
HapII CCGG 3 cut(s) 311, 422, 432
HgaI GACGC 1 cut(s) 148
HhaI GCGC 2 cut(s) 338, 773
Hin1I GRCGYC 1 cut(s) 336
Hin1II CATG 5 cut(s) 33, 154, 577, 595, 862
Hin6I GCGC 2 cut(s) 336, 771
HinP1I GCGC 2 cut(s) 336, 771
HindIII AAGCTT 1 cut(s) 463
HinfI GANTC 6 cut(s) 19, 78, 435, 844, 879, 894
HpaII CCGG 3 cut(s) 311, 422, 432
HphI GGTGA 2 cut(s) 467, 748
Hpy166II GTNNAC 3 cut(s) 458, 736, 927
Hpy188I TCNGA 5 cut(s) 77, 90, 138, 171, 553
Hpy188III TCNNGA 1 cut(s) 382
Hpy8I GTNNAC 3 cut(s) 458, 736, 927
HpyAV CCTTC 2 cut(s) 190, 317
HpyCH4III ACNGT 2 cut(s) 886, 931
HpyCH4IV ACGT 3 cut(s) 177, 291, 404
HpyCH4V TGCA 3 cut(s) 211, 626, 800
HpyF10VI GCNNNNNNNGC 7 cut(s) 245, 335, 365, 506, 512, 602, 806
HpyF3I CTNAG 2 cut(s) 170, 254
HpySE526I ACGT 3 cut(s) 177, 291, 404
Hsp92I GRCGYC 1 cut(s) 336
Hsp92II CATG 5 cut(s) 33, 154, 577, 595, 862
HspAI GCGC 2 cut(s) 336, 771
KasI GGCGCC 1 cut(s) 335
KpnI GGTACC 2 cut(s) 307, 703
Ksp22I TGATCA 1 cut(s) 378
KspI CCGCGG 1 cut(s) 360
Kzo9I GATC 5 cut(s) 39, 243, 378, 657, 667
LmnI GCTCC 4 cut(s) 71, 208, 624, 806
Lsp1109I GCAGC 1 cut(s) 493
MaeI CTAG 2 cut(s) 447, 665
MaeII ACGT 3 cut(s) 177, 291, 404
MaeIII GTNAC 4 cut(s) 146, 400, 493, 754
MalI GATC 5 cut(s) 41, 245, 380, 659, 669
MboI GATC 5 cut(s) 39, 243, 378, 657, 667
MboII GAAGA 4 cut(s) 397, 540, 708, 931
MflI RGATCY 1 cut(s) 667
MlsI TGGCCA 1 cut(s) 182
MluCI AATT 7 cut(s) 109, 537, 609, 712, 745, 828, 937
MluNI TGGCCA 1 cut(s) 182
Mly113I GGCGCC 1 cut(s) 336
MlyI GAGTC 5 cut(s) 28, 87, 444, 873, 903
MmeI TCCRAC 2 cut(s) 93, 871
MnlI CCTC 8 cut(s) 213, 294, 381, 385, 425, 713, 791, 915
Mox20I TGGCCA 1 cut(s) 182
MscI TGGCCA 1 cut(s) 182
MseI TTAA 3 cut(s) 321, 840, 933
MslI CAYNNNNRTG 1 cut(s) 863
Msp20I TGGCCA 1 cut(s) 182
MspA1I CMGCKG 2 cut(s) 235, 359
MspI CCGG 3 cut(s) 311, 422, 432
MspR9I CCNGG 3 cut(s) 326, 511, 785
Mva1269I GAATGC 1 cut(s) 515
MvaI CCWGG 3 cut(s) 326, 511, 785
MvnI CGCG 2 cut(s) 248, 359
MwoI GCNNNNNNNGC 7 cut(s) 245, 335, 365, 506, 512, 602, 806
NarI GGCGCC 1 cut(s) 336
NcoI CCATGG 1 cut(s) 29
NdeII GATC 5 cut(s) 39, 243, 378, 657, 667
NlaIII CATG 5 cut(s) 33, 154, 577, 595, 862
NlaIV GGNNCC 5 cut(s) 67, 305, 337, 597, 701
NmuCI GTSAC 2 cut(s) 146, 754
PcsI WCGNNNNNNNCGW 1 cut(s) 48
PctI GAATGC 1 cut(s) 515
PfeI GAWTC 1 cut(s) 844
PflMI CCANNNNNTGG 1 cut(s) 790
PkrI GCNGC 2 cut(s) 10, 508
Ple19I CGATCG 1 cut(s) 42
PleI GAGTC 5 cut(s) 27, 86, 443, 873, 902
PluTI GGCGCC 1 cut(s) 339
PpsI GAGTC 5 cut(s) 27, 86, 443, 873, 902
Ppu21I YACGTR 2 cut(s) 178, 405
PshAI GACNNNNGTC 1 cut(s) 18
Psp6I CCWGG 3 cut(s) 324, 509, 783
PspEI GGTNACC 1 cut(s) 754
PspGI CCWGG 3 cut(s) 324, 509, 783
PspN4I GGNNCC 5 cut(s) 67, 305, 337, 597, 701
PspPI GGNCC 2 cut(s) 33, 222
PsrI GAACNNNNNNTAC 2 cut(s) 692, 724
PsuI RGATCY 1 cut(s) 667
PvuI CGATCG 1 cut(s) 42
PvuII CAGCTG 1 cut(s) 235
RsaI GTAC 6 cut(s) 62, 125, 305, 407, 701, 905
RsaNI GTAC 6 cut(s) 61, 124, 304, 406, 700, 904
RseI CAYNNNNRTG 1 cut(s) 863
SacII CCGCGG 1 cut(s) 360
SaqAI TTAA 3 cut(s) 321, 840, 933
SatI GCNGC 2 cut(s) 9, 507
Sau3AI GATC 5 cut(s) 39, 243, 378, 657, 667
Sau96I GGNCC 2 cut(s) 33, 222
SchI GAGTC 5 cut(s) 28, 87, 444, 873, 903
ScrFI CCNGG 3 cut(s) 326, 511, 785
SfcI CTRYAG 1 cut(s) 816
SfoI GGCGCC 1 cut(s) 337
Sfr303I CCGCGG 1 cut(s) 360
SgrBI CCGCGG 1 cut(s) 360
SinI GGWCC 1 cut(s) 222
SmiMI CAYNNNNRTG 1 cut(s) 863
SnaBI TACGTA 1 cut(s) 405
Sse9I AATT 7 cut(s) 109, 537, 609, 712, 745, 828, 937
SsiI CCGC 6 cut(s) 6, 9, 248, 329, 357, 359
SspDI GGCGCC 1 cut(s) 335
SspI AATATT 1 cut(s) 633
SspMI CTAG 2 cut(s) 447, 665
StyD4I CCNGG 3 cut(s) 324, 509, 783
StyI CCWWGG 2 cut(s) 29, 225
TaaI ACNGT 2 cut(s) 886, 931
TaiI ACGT 3 cut(s) 180, 294, 407
TasI AATT 7 cut(s) 109, 537, 609, 712, 745, 828, 937
TatI WGTACW 1 cut(s) 903
TauI GCSGC 1 cut(s) 11
TfiI GAWTC 1 cut(s) 844
Tru1I TTAA 3 cut(s) 321, 840, 933
Tru9I TTAA 3 cut(s) 321, 840, 933
TscAI CASTG 1 cut(s) 889
TseFI GTSAC 2 cut(s) 146, 754
TseI GCWGC 1 cut(s) 506
Tsp45I GTSAC 2 cut(s) 146, 754
TspDTI ATGAA 4 cut(s) 209, 590, 843, 847
TspRI CASTG 1 cut(s) 889
Van91I CCANNNNNTGG 1 cut(s) 790
VpaK11BI GGWCC 1 cut(s) 222
XapI RAATTY 1 cut(s) 537
XcmI CCANNNNNNNNNTGG 1 cut(s) 232
XmiI GTMKAC 1 cut(s) 926
XspI CTAG 2 cut(s) 447, 665
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.