MD01G1145600.v1.1

sugar phosphate phosphate translocator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
OG0000810
Physical Location & Seq
Forward (+)
25549636 .. 25552498
2863 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1145600.v1.1.491

Sequence Viewer

Length: 924 bp
ATGAAGGGGAAGAGCCGCTTGTTCACGATCGGGCTCGTCACCGCCTGGTACTCATCCAACATTGGGGTTTTGCTGCTGAACAAGTACTTGCTCAGCAACTATGGCTTCAAGTACCCGATCTTCCTCACCATGTGCCACATGACGGCTTGCTCTCTGCTCAGCTACGTCGCAATTGCTTGGATGAAGATGGTTCCGATGCAGACCATTCGATCCCGGGTCCAATTCTTGAAGATCATGGCGCTCAGCCTGGTGTTTTGTGTCTCCGTCGTGTTTGGGAACATTTCGCTGCGGTATTTGCCGGTGTCGTTTAACCAGGCTATTGGCGCCACCACGCCGTTCTTCACTGCGGTTTTCGCCTACTTAATGACTCTCAAAAAGGAGGCTTGGCTCACGTATCTCACCCTCGTTCCTGTTGTTACTGGAGTCGTCATTGCAAGTGGGGGTGAACCAAGTTTCCATTTATTTGGTTTCTTAATATGCATAGCAGCAACCGCTGCCAGGGCGCTTAAATCAGTGCTACAAGGGATTTTGCTTTCTTCTGAAGGGGAGAAGCTGAATTCTATGAACCTCCTTCTGTATATGGCTCCGATAGCCGTTGTTTTCTTACTTCCCGCAACACTTATCATGGAAGAAAATGTTGTCGGTATAACACTAGCTCTTGCAAGAGATGATGTCAAGATCATATGGTACCTACTATTCAATTCGACGTTGGCATATTTTGTAAATCTGACCAACTTTTTGGTCACAAAGCACACCAGTGCTCTAACTCTTCAGGTTCTAGGGAATGCTAAAGGAGCTGTAGCTGTGGTGGTCTCGATATTAATTTTTAAAAATCCAGTTTCTGTGACTGGAATGATGGGTTACACTCTTACAGTCTTTGGAGTGATCCTATACAGCGAAGCCAAGAAACGAAGTAAATCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPT

Protein Analysis

308

Amino Acids

33.72

Weight (kDa)

9.74

Isoelectric Point (pI)

30.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPT PF03151 12 - 299 5.3e-47 Triose-phosphate Transporter family
UAA PF08449 26 - 301 2e-14 UAA transporter family
EamA PF00892 38 - 146 1e-05 EamA-like transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 687
AccB1I GGYRCC 2 cut(s) 323, 687
AciI CCGC 6 cut(s) 16, 42, 289, 347, 492, 612
AclWI GGATC 2 cut(s) 204, 880
AcsI RAATTY 1 cut(s) 556
AcuI CTGAAG 2 cut(s) 561, 755
AcyI GRCGYC 1 cut(s) 324
AdeI CACNNNGTG 1 cut(s) 132
AfaI GTAC 4 cut(s) 50, 86, 113, 689
AfiI CCNNNNNNNGG 3 cut(s) 63, 142, 498
AgsI TTSAA 3 cut(s) 109, 229, 700
AjnI CCWGG 4 cut(s) 44, 246, 312, 497
AleI CACNNNNGTG 1 cut(s) 756
AloI GAACNNNNNNTCC 2 cut(s) 438, 470
AluBI AGCT 5 cut(s) 162, 553, 656, 797, 803
AluI AGCT 5 cut(s) 162, 553, 656, 797, 803
Alw21I GWGCWC 1 cut(s) 763
Alw26I GTCTC 2 cut(s) 265, 817
AlwI GGATC 2 cut(s) 204, 880
AlwNI CAGNNNCTG 1 cut(s) 842
Ama87I CYCGRG 1 cut(s) 213
ApeKI GCWGC 4 cut(s) 73, 286, 485, 494
ApoI RAATTY 1 cut(s) 556
ArsI GACNNNNNNTTYG 2 cut(s) 721, 753
AseI ATTAAT 1 cut(s) 821
Asp718I GGTACC 1 cut(s) 687
AspLEI GCGC 3 cut(s) 241, 326, 505
AspS9I GGNCC 1 cut(s) 217
AsuC2I CCSGG 2 cut(s) 214, 215
AsuHPI GGTGA 4 cut(s) 31, 118, 391, 455
AvaI CYCGRG 1 cut(s) 213
AvaII GGWCC 1 cut(s) 217
BanI GGYRCC 2 cut(s) 323, 687
BanII GRGCYC 1 cut(s) 36
BarI GAAGNNNNNNTAC 2 cut(s) 104, 136
Bbv12I GWGCWC 1 cut(s) 763
BbvI GCAGC 4 cut(s) 60, 273, 481, 497
BccI CCATC 2 cut(s) 181, 850
BceAI ACGGC 3 cut(s) 159, 319, 578
BcgI CGANNNNNNTGC 2 cut(s) 188, 222
BciT130I CCWGG 4 cut(s) 46, 248, 314, 499
BcnI CCSGG 2 cut(s) 214, 215
BcoDI GTCTC 2 cut(s) 265, 817
BfaI CTAG 2 cut(s) 653, 779
BfmI CTRYAG 1 cut(s) 798
BfoI RGCGCY 3 cut(s) 242, 327, 506
BisI GCNGC 5 cut(s) 16, 74, 287, 486, 495
BlpI GCTNAGC 3 cut(s) 92, 158, 242
BlsI GCNGC 5 cut(s) 17, 75, 288, 487, 496
BmcAI AGTACT 1 cut(s) 86
Bme1390I CCNGG 6 cut(s) 46, 214, 215, 248, 314, 499
Bme18I GGWCC 1 cut(s) 217
BmeT110I CYCGRG 1 cut(s) 213
BmgT120I GGNCC 1 cut(s) 217
BmiI GGNNCC 5 cut(s) 192, 218, 325, 585, 689
BmrFI CCNGG 6 cut(s) 46, 214, 215, 248, 314, 499
BmsI GCATC 1 cut(s) 186
BpmI CTGGAG 1 cut(s) 441
Bpu1102I GCTNAGC 3 cut(s) 92, 158, 242
BpuMI CCSGG 2 cut(s) 214, 215
BsaAI YACGTR 1 cut(s) 393
BsaHI GRCGYC 1 cut(s) 324
BsaI GGTCTC 1 cut(s) 817
BsaJI CCNNGG 2 cut(s) 213, 498
Bsc4I CCNNNNNNNGG 3 cut(s) 63, 142, 498
Bse118I RCCGGY 1 cut(s) 298
Bse1I ACTGG 4 cut(s) 424, 756, 836, 853
Bse3DI GCAATG 1 cut(s) 429
BseBI CCWGG 4 cut(s) 46, 248, 314, 499
BseDI CCNNGG 2 cut(s) 213, 498
BseGI GGATG 2 cut(s) 53, 186
BseLI CCNNNNNNNGG 3 cut(s) 63, 142, 498
BseMI GCAATG 1 cut(s) 429
BseMII CTCAG 3 cut(s) 106, 172, 256
BseNI ACTGG 4 cut(s) 424, 756, 836, 853
BseXI GCAGC 4 cut(s) 60, 273, 481, 497
Bsh1285I CGRYCG 1 cut(s) 30
BshNI GGYRCC 2 cut(s) 323, 687
BsiEI CGRYCG 1 cut(s) 30
BsiHKAI GWGCWC 1 cut(s) 763
BsiHKCI CYCGRG 1 cut(s) 213
BsiSI CCGG 2 cut(s) 214, 299
BslI CCNNNNNNNGG 3 cut(s) 63, 142, 498
BsmAI GTCTC 2 cut(s) 265, 817
BsmI GAATGC 1 cut(s) 790
Bso31I GGTCTC 1 cut(s) 817
BsoBI CYCGRG 1 cut(s) 213
Bsp1286I GDGCHC 2 cut(s) 36, 763
Bsp143I GATC 6 cut(s) 27, 117, 209, 231, 678, 885
Bsp1720I GCTNAGC 3 cut(s) 92, 158, 242
BspACI CCGC 6 cut(s) 16, 42, 289, 347, 492, 612
BspCNI CTCAG 3 cut(s) 105, 171, 255
BspLI GGNNCC 5 cut(s) 192, 218, 325, 585, 689
BspPI GGATC 2 cut(s) 204, 880
BspQI GCTCTTC 1 cut(s) 5
BspT107I GGYRCC 2 cut(s) 323, 687
BspTNI GGTCTC 1 cut(s) 817
BsrDI GCAATG 1 cut(s) 429
BsrFI RCCGGY 1 cut(s) 298
BsrI ACTGG 4 cut(s) 424, 756, 836, 853
BssAI RCCGGY 1 cut(s) 298
BssECI CCNNGG 2 cut(s) 213, 498
BssMI GATC 6 cut(s) 27, 117, 209, 231, 678, 885
BssNI GRCGYC 1 cut(s) 324
Bst2UI CCWGG 4 cut(s) 46, 248, 314, 499
Bst4CI ACNGT 1 cut(s) 874
Bst6I CTCTTC 2 cut(s) 5, 774
BstACI GRCGYC 1 cut(s) 324
BstAPI GCANNNNNTGC 1 cut(s) 494
BstBAI YACGTR 1 cut(s) 393
BstC8I GCNNGC 1 cut(s) 148
BstDEI CTNAG 3 cut(s) 92, 158, 242
BstF5I GGATG 2 cut(s) 53, 186
BstH2I RGCGCY 3 cut(s) 242, 327, 506
BstHHI GCGC 3 cut(s) 241, 326, 505
BstKTI GATC 6 cut(s) 30, 120, 212, 234, 681, 888
BstMAI GTCTC 2 cut(s) 265, 817
BstMBI GATC 6 cut(s) 27, 117, 209, 231, 678, 885
BstMCI CGRYCG 1 cut(s) 30
BstMWI GCNNNNNNNGC 9 cut(s) 102, 295, 323, 353, 491, 494, 500, 590, 794
BstNI CCWGG 4 cut(s) 46, 248, 314, 499
BstSCI CCNGG 6 cut(s) 44, 212, 213, 246, 312, 497
BstSFI CTRYAG 1 cut(s) 798
BstV1I GCAGC 4 cut(s) 60, 273, 481, 497
BstXI CCANNNNNNTGG 3 cut(s) 320, 464, 739
BtsCI GGATG 2 cut(s) 53, 186
BtsI GCAGTG 1 cut(s) 342
BtsIMutI CAGTG 3 cut(s) 342, 519, 763
Cac8I GCNNGC 1 cut(s) 148
CaiI CAGNNNCTG 1 cut(s) 842
CfoI GCGC 3 cut(s) 241, 326, 505
Cfr10I RCCGGY 1 cut(s) 298
Cfr13I GGNCC 1 cut(s) 217
Cfr9I CCCGGG 1 cut(s) 213
Csp6I GTAC 4 cut(s) 49, 85, 112, 688
CviAII CATG 4 cut(s) 130, 139, 235, 625
CviQI GTAC 4 cut(s) 49, 85, 112, 688
DdeI CTNAG 3 cut(s) 92, 158, 242
DinI GGCGCC 1 cut(s) 325
DpnI GATC 6 cut(s) 29, 119, 211, 233, 680, 887
DpnII GATC 6 cut(s) 27, 117, 209, 231, 678, 885
DraI TTTAAA 1 cut(s) 829
DraIII CACNNNGTG 1 cut(s) 132
Eam1104I CTCTTC 2 cut(s) 5, 774
EarI CTCTTC 2 cut(s) 5, 774
Eco24I GRGCYC 1 cut(s) 36
Eco31I GGTCTC 1 cut(s) 817
Eco47I GGWCC 1 cut(s) 217
Eco57I CTGAAG 2 cut(s) 561, 755
Eco88I CYCGRG 1 cut(s) 213
EcoRI GAATTC 1 cut(s) 556
EcoRII CCWGG 4 cut(s) 44, 246, 312, 497
EcoT22I ATGCAT 1 cut(s) 482
EcoT38I GRGCYC 1 cut(s) 36
EgeI GGCGCC 1 cut(s) 325
EheI GGCGCC 1 cut(s) 325
FaeI CATG 4 cut(s) 133, 142, 238, 628
FalI AAGNNNNNCTT 1 cut(s) 34
FatI CATG 4 cut(s) 129, 138, 234, 624
FauI CCCGC 1 cut(s) 619
FauNDI CATATG 1 cut(s) 683
Fnu4HI GCNGC 5 cut(s) 16, 74, 287, 486, 495
FokI GGATG 2 cut(s) 40, 193
FriOI GRGCYC 1 cut(s) 36
Fsp4HI GCNGC 5 cut(s) 16, 74, 287, 486, 495
FspBI CTAG 2 cut(s) 653, 779
GlaI GCGC 3 cut(s) 240, 325, 504
GluI GCNGC 5 cut(s) 16, 74, 287, 486, 495
GsuI CTGGAG 1 cut(s) 441
HaeII RGCGCY 3 cut(s) 242, 327, 506
HapII CCGG 2 cut(s) 214, 299
HhaI GCGC 3 cut(s) 241, 326, 505
Hin1I GRCGYC 1 cut(s) 324
Hin1II CATG 4 cut(s) 133, 142, 238, 628
Hin6I GCGC 3 cut(s) 239, 324, 503
HinP1I GCGC 3 cut(s) 239, 324, 503
HinfI GANTC 2 cut(s) 367, 423
HpaII CCGG 2 cut(s) 214, 299
HphI GGTGA 4 cut(s) 31, 118, 391, 455
Hpy166II GTNNAC 2 cut(s) 24, 446
Hpy188I TCNGA 4 cut(s) 195, 541, 588, 729
Hpy188III TCNNGA 4 cut(s) 25, 226, 676, 814
Hpy8I GTNNAC 2 cut(s) 24, 446
Hpy99I CGWCG 3 cut(s) 170, 269, 709
HpyAV CCTTC 2 cut(s) 536, 581
HpyCH4III ACNGT 1 cut(s) 874
HpyCH4IV ACGT 3 cut(s) 165, 392, 707
HpyCH4V TGCA 4 cut(s) 199, 434, 480, 662
HpyF10VI GCNNNNNNNGC 9 cut(s) 102, 295, 323, 353, 491, 494, 500, 590, 794
HpyF3I CTNAG 3 cut(s) 92, 158, 242
HpySE526I ACGT 3 cut(s) 165, 392, 707
Hsp92I GRCGYC 1 cut(s) 324
Hsp92II CATG 4 cut(s) 133, 142, 238, 628
HspAI GCGC 3 cut(s) 239, 324, 503
KasI GGCGCC 1 cut(s) 323
KpnI GGTACC 1 cut(s) 691
Kzo9I GATC 6 cut(s) 27, 117, 209, 231, 678, 885
LguI GCTCTTC 1 cut(s) 5
LmnI GCTCC 2 cut(s) 589, 794
Lsp1109I GCAGC 4 cut(s) 60, 273, 481, 497
LweI GCATC 1 cut(s) 186
MaeI CTAG 2 cut(s) 653, 779
MaeII ACGT 3 cut(s) 165, 392, 707
MaeIII GTNAC 5 cut(s) 37, 415, 742, 844, 860
MalI GATC 6 cut(s) 29, 119, 211, 233, 680, 887
MboI GATC 6 cut(s) 27, 117, 209, 231, 678, 885
MboII GAAGA 8 cut(s) 22, 112, 196, 241, 331, 528, 641, 761
MfeI CAATTG 1 cut(s) 171
MhlI GDGCHC 2 cut(s) 36, 763
MluCI AATT 5 cut(s) 171, 221, 556, 700, 822
Mly113I GGCGCC 1 cut(s) 324
MlyI GAGTC 2 cut(s) 361, 432
MmeI TCCRAC 1 cut(s) 81
MnlI CCTC 4 cut(s) 134, 373, 413, 578
Mph1103I ATGCAT 1 cut(s) 482
MseI TTAA 6 cut(s) 309, 362, 473, 507, 821, 828
MslI CAYNNNNRTG 1 cut(s) 756
MspA1I CMGCKG 1 cut(s) 494
MspI CCGG 2 cut(s) 214, 299
MspR9I CCNGG 6 cut(s) 46, 214, 215, 248, 314, 499
MunI CAATTG 1 cut(s) 171
Mva1269I GAATGC 1 cut(s) 790
MvaI CCWGG 4 cut(s) 46, 248, 314, 499
MwoI GCNNNNNNNGC 9 cut(s) 102, 295, 323, 353, 491, 494, 500, 590, 794
NarI GGCGCC 1 cut(s) 324
NciI CCSGG 2 cut(s) 214, 215
NdeI CATATG 1 cut(s) 683
NdeII GATC 6 cut(s) 27, 117, 209, 231, 678, 885
NlaIII CATG 4 cut(s) 133, 142, 238, 628
NlaIV GGNNCC 5 cut(s) 192, 218, 325, 585, 689
NmuCI GTSAC 3 cut(s) 37, 742, 844
NsiI ATGCAT 1 cut(s) 482
OliI CACNNNNGTG 1 cut(s) 756
PciSI GCTCTTC 1 cut(s) 5
PctI GAATGC 1 cut(s) 790
PkrI GCNGC 5 cut(s) 17, 75, 288, 487, 496
Ple19I CGATCG 1 cut(s) 30
PleI GAGTC 2 cut(s) 361, 431
PluTI GGCGCC 1 cut(s) 327
PpsI GAGTC 2 cut(s) 361, 431
Ppu21I YACGTR 1 cut(s) 393
PshBI ATTAAT 1 cut(s) 821
Psp6I CCWGG 4 cut(s) 44, 246, 312, 497
PspGI CCWGG 4 cut(s) 44, 246, 312, 497
PspN4I GGNNCC 5 cut(s) 192, 218, 325, 585, 689
PspPI GGNCC 1 cut(s) 217
PstNI CAGNNNCTG 1 cut(s) 842
PvuI CGATCG 1 cut(s) 30
RsaI GTAC 4 cut(s) 50, 86, 113, 689
RsaNI GTAC 4 cut(s) 49, 85, 112, 688
RseI CAYNNNNRTG 1 cut(s) 756
SapI GCTCTTC 1 cut(s) 5
SaqAI TTAA 6 cut(s) 309, 362, 473, 507, 821, 828
SatI GCNGC 5 cut(s) 16, 74, 287, 486, 495
Sau3AI GATC 6 cut(s) 27, 117, 209, 231, 678, 885
Sau96I GGNCC 1 cut(s) 217
ScaI AGTACT 1 cut(s) 86
SchI GAGTC 2 cut(s) 361, 432
ScrFI CCNGG 6 cut(s) 46, 214, 215, 248, 314, 499
SduI GDGCHC 2 cut(s) 36, 763
SfaNI GCATC 1 cut(s) 186
SfcI CTRYAG 1 cut(s) 798
SfoI GGCGCC 1 cut(s) 325
SinI GGWCC 1 cut(s) 217
SmaI CCCGGG 1 cut(s) 215
SmiMI CAYNNNNRTG 1 cut(s) 756
Sse9I AATT 5 cut(s) 171, 221, 556, 700, 822
SsiI CCGC 6 cut(s) 16, 42, 289, 347, 492, 612
SspDI GGCGCC 1 cut(s) 323
SspMI CTAG 2 cut(s) 653, 779
StyD4I CCNGG 6 cut(s) 44, 212, 213, 246, 312, 497
TaaI ACNGT 1 cut(s) 874
TaiI ACGT 3 cut(s) 168, 395, 710
TaqI TCGA 3 cut(s) 208, 704, 815
TasI AATT 5 cut(s) 171, 221, 556, 700, 822
TatI WGTACW 1 cut(s) 84
TauI GCSGC 1 cut(s) 18
Tru1I TTAA 6 cut(s) 309, 362, 473, 507, 821, 828
Tru9I TTAA 6 cut(s) 309, 362, 473, 507, 821, 828
TscAI CASTG 3 cut(s) 349, 519, 763
TseFI GTSAC 3 cut(s) 37, 742, 844
TseI GCWGC 4 cut(s) 73, 286, 485, 494
Tsp45I GTSAC 3 cut(s) 37, 742, 844
TspDTI ATGAA 3 cut(s) 17, 197, 578
TspGWI ACGGA 1 cut(s) 253
TspMI CCCGGG 1 cut(s) 213
TspRI CASTG 3 cut(s) 349, 519, 763
VpaK11BI GGWCC 1 cut(s) 217
VspI ATTAAT 1 cut(s) 821
XapI RAATTY 1 cut(s) 556
XmaI CCCGGG 1 cut(s) 213
XspI CTAG 2 cut(s) 653, 779
ZrmI AGTACT 1 cut(s) 86
Zsp2I ATGCAT 1 cut(s) 482
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.