MD12G1158900.v1.1

sugar phosphate phosphate translocator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
OG0000810
Physical Location & Seq
Forward (+)
23920716 .. 23922517
1802 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1158900.v1.1.491

Sequence Viewer

Length: 939 bp
ATGATGATGTCGGCGCCGATCGAATGGACGACGGTCTGGATGGTCGCCGCCTGGTACGGCTCCAACATCGGCGTCCTGCTTCTAAACAAGTACCTGCTCACGAACTACGGGTTCGGGTTTCCCATTTTTCTGACGCTCTGCCACATGACGGCGTGTTCGGTGTTCAGCTACGTCGCCGTAGCTGTGATGAAGGTGGCCTTACTGCAGAGCGTGAAGTCAAAGGCTCAGTTCGCCAAGATCGCCGGGCTCAGTGTCGTTTTCTGCTTCTCCGTCGTTTGCGGTAACGTGTCGTTGAGGTACATTCCCGTGTCGTTTAATCAGGCCGTCAGCGCCACCACCCCTTTTTTCACCGCCATTTTTGCCTTCTTGATCATCAAGAGTAGGGAGGCTTGGCTTACTTATGCCGCACTCATTCCTGTTGTTGCAGGTGTTATCTTTGCTAGTGGGGGCGAACCAAGCTTCCATCTTTTCGGGTTTGTTATGTGTATTACAGCTACATCTGCAAGGGCATTCAAATCGGTTCTTCAAGAAATTTTGCTTTCCTCTGACGGGGAAAAACTGGACTCTATGAACCTGCTGTTGTACATGGCGCCATTAGCCGTGGCGTTCTTACTTCCTGCAACACTGTTGATGGAGAAAAATGCGGTCGGATTCACAATCGAACTTGCTCGAAAAGATATCAAAATTATTTGGTACCTGTTCTTCAATTCTTCAATGGCTTATTTTGTTAACTTGACCCATTTCTTGGTCACCAAGCATACAAGCGCTTTGACCCTTCAGGTGCTGGGGAATGCAAAAGGGGCAGTTGCTGTGGTGGTTTCAGTTTTGATATTTAAAAATCCAGTTTCATTCATGGGGATGGCGGGTTATGCACTCACTGTCCTTGGAGTTATTTTGTACAGTGAAGCCAAGAAGAGGTATAGTCGAATCCATCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPT

Protein Analysis

313

Amino Acids

34.18

Weight (kDa)

9.46

Isoelectric Point (pI)

34.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPT PF03151 13 - 301 1.7e-46 Triose-phosphate Transporter family
UAA PF08449 28 - 303 4.8e-17 UAA transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 416
Acc36I ACCTGC 3 cut(s) 102, 416, 582
Acc65I GGTACC 1 cut(s) 693
AccB1I GGYRCC 3 cut(s) 13, 589, 693
AccB7I CCANNNNNTGG 1 cut(s) 745
AciI CCGC 6 cut(s) 48, 279, 351, 405, 644, 863
AcsI RAATTY 1 cut(s) 531
AcuI CTGAAG 1 cut(s) 761
AcyI GRCGYC 3 cut(s) 14, 72, 590
AfaI GTAC 6 cut(s) 56, 92, 299, 584, 695, 899
AfeI AGCGCT 1 cut(s) 766
AfiI CCNNNNNNNGG 4 cut(s) 148, 549, 745, 915
AflIII ACRYGT 1 cut(s) 285
AgsI TTSAA 4 cut(s) 514, 527, 706, 714
AjnI CCWGG 1 cut(s) 50
AloI GAACNNNNNNTCC 2 cut(s) 444, 476
AluBI AGCT 4 cut(s) 168, 182, 459, 494
AluI AGCT 4 cut(s) 168, 182, 459, 494
AlwNI CAGNNNCTG 2 cut(s) 784, 809
Aor51HI AGCGCT 1 cut(s) 766
AoxI GGCC 2 cut(s) 195, 321
ApoI RAATTY 1 cut(s) 531
ArsI GACNNNNNNTTYG 2 cut(s) 139, 171
Asp718I GGTACC 1 cut(s) 693
AspLEI GCGC 4 cut(s) 16, 332, 592, 767
AsuC2I CCSGG 1 cut(s) 244
AsuHPI GGTGA 2 cut(s) 340, 742
BanI GGYRCC 3 cut(s) 13, 589, 693
BanII GRGCYC 1 cut(s) 249
BarI GAAGNNNNNNTAC 2 cut(s) 686, 718
BccI CCATC 4 cut(s) 34, 471, 625, 853
BceAI ACGGC 5 cut(s) 73, 161, 165, 308, 584
BcgI CGANNNNNNTGC 2 cut(s) 498, 532
BciT130I CCWGG 1 cut(s) 52
BclI TGATCA 1 cut(s) 369
BcnI CCSGG 1 cut(s) 244
BfaI CTAG 2 cut(s) 441, 937
BfmI CTRYAG 1 cut(s) 203
BfoI RGCGCY 4 cut(s) 17, 333, 593, 768
BfuAI ACCTGC 3 cut(s) 102, 416, 582
BisI GCNGC 2 cut(s) 48, 405
BlsI GCNGC 2 cut(s) 49, 406
Bme1390I CCNGG 2 cut(s) 52, 244
BmiI GGNNCC 4 cut(s) 15, 61, 591, 695
BmrFI CCNGG 2 cut(s) 52, 244
BoxI GACNNNNGTC 1 cut(s) 32
BpuMI CCSGG 1 cut(s) 244
BsaHI GRCGYC 3 cut(s) 14, 72, 590
BsaJI CCNNGG 2 cut(s) 600, 883
Bsc4I CCNNNNNNNGG 4 cut(s) 148, 549, 745, 915
Bse1I ACTGG 2 cut(s) 564, 842
BseBI CCWGG 1 cut(s) 52
BseDI CCNNGG 2 cut(s) 600, 883
BseGI GGATG 2 cut(s) 45, 864
BseLI CCNNNNNNNGG 4 cut(s) 148, 549, 745, 915
BseMII CTCAG 2 cut(s) 239, 262
BseNI ACTGG 2 cut(s) 564, 842
BseYI CCCAGC 1 cut(s) 784
Bsh1285I CGRYCG 2 cut(s) 21, 648
BshFI GGCC 2 cut(s) 197, 323
BshNI GGYRCC 3 cut(s) 13, 589, 693
BsiEI CGRYCG 2 cut(s) 21, 648
BsiSI CCGG 1 cut(s) 243
BslI CCNNNNNNNGG 4 cut(s) 148, 549, 745, 915
BsmI GAATGC 2 cut(s) 509, 796
BsnI GGCC 2 cut(s) 197, 323
Bsp1286I GDGCHC 1 cut(s) 249
Bsp1407I TGTACA 2 cut(s) 582, 897
Bsp143I GATC 3 cut(s) 18, 237, 369
BspACI CCGC 6 cut(s) 48, 279, 351, 405, 644, 863
BspANI GGCC 2 cut(s) 197, 323
BspCNI CTCAG 2 cut(s) 238, 261
BspLI GGNNCC 4 cut(s) 15, 61, 591, 695
BspMAI CTGCAG 1 cut(s) 207
BspMI ACCTGC 3 cut(s) 102, 416, 582
BspT107I GGYRCC 3 cut(s) 13, 589, 693
BsrGI TGTACA 2 cut(s) 582, 897
BsrI ACTGG 2 cut(s) 564, 842
BssECI CCNNGG 2 cut(s) 600, 883
BssMI GATC 3 cut(s) 18, 237, 369
BssNI GRCGYC 3 cut(s) 14, 72, 590
BssT1I CCWWGG 1 cut(s) 883
Bst2UI CCWGG 1 cut(s) 52
Bst4CI ACNGT 4 cut(s) 34, 627, 880, 902
Bst6I CTCTTC 1 cut(s) 908
BstACI GRCGYC 3 cut(s) 14, 72, 590
BstAUI TGTACA 2 cut(s) 582, 897
BstDEI CTNAG 2 cut(s) 225, 248
BstDSI CCRYGG 1 cut(s) 600
BstEII GGTNACC 1 cut(s) 748
BstF5I GGATG 2 cut(s) 45, 864
BstH2I RGCGCY 4 cut(s) 17, 333, 593, 768
BstHHI GCGC 4 cut(s) 16, 332, 592, 767
BstKTI GATC 3 cut(s) 21, 240, 372
BstMBI GATC 3 cut(s) 18, 237, 369
BstMCI CGRYCG 2 cut(s) 21, 648
BstMWI GCNNNNNNNGC 9 cut(s) 230, 239, 329, 359, 456, 500, 596, 800, 869
BstNI CCWGG 1 cut(s) 52
BstPAI GACNNNNGTC 1 cut(s) 32
BstPI GGTNACC 1 cut(s) 748
BstSCI CCNGG 2 cut(s) 50, 242
BstSFI CTRYAG 1 cut(s) 203
BsuRI GGCC 2 cut(s) 197, 323
BtgI CCRYGG 1 cut(s) 600
BtsCI GGATG 2 cut(s) 45, 864
BtsIMutI CAGTG 4 cut(s) 256, 623, 876, 907
BveI ACCTGC 3 cut(s) 102, 416, 582
CaiI CAGNNNCTG 2 cut(s) 784, 809
CfoI GCGC 4 cut(s) 16, 332, 592, 767
CseI GACGC 2 cut(s) 61, 142
Csp6I GTAC 6 cut(s) 55, 91, 298, 583, 694, 898
CviAII CATG 3 cut(s) 145, 586, 853
CviQI GTAC 6 cut(s) 55, 91, 298, 583, 694, 898
DdeI CTNAG 2 cut(s) 225, 248
DinI GGCGCC 2 cut(s) 15, 591
DpnI GATC 3 cut(s) 20, 239, 371
DpnII GATC 3 cut(s) 18, 237, 369
DraI TTTAAA 1 cut(s) 835
Eam1104I CTCTTC 1 cut(s) 908
EarI CTCTTC 1 cut(s) 908
Eco130I CCWWGG 1 cut(s) 883
Eco24I GRGCYC 1 cut(s) 249
Eco32I GATATC 1 cut(s) 679
Eco47III AGCGCT 1 cut(s) 766
Eco57I CTGAAG 1 cut(s) 761
Eco91I GGTNACC 1 cut(s) 748
EcoO65I GGTNACC 1 cut(s) 748
EcoRII CCWGG 1 cut(s) 50
EcoRV GATATC 1 cut(s) 679
EcoT14I CCWWGG 1 cut(s) 883
EcoT38I GRGCYC 1 cut(s) 249
EgeI GGCGCC 2 cut(s) 15, 591
EheI GGCGCC 2 cut(s) 15, 591
ErhI CCWWGG 1 cut(s) 883
FaeI CATG 3 cut(s) 148, 589, 856
FaiI YATR 9 cut(s) 146, 402, 482, 569, 587, 759, 854, 870, 921
FalI AAGNNNNNCTT 2 cut(s) 182, 214
FatI CATG 3 cut(s) 144, 585, 852
FauI CCCGC 1 cut(s) 856
FbaI TGATCA 1 cut(s) 369
Fnu4HI GCNGC 2 cut(s) 48, 405
FokI GGATG 2 cut(s) 52, 871
FriOI GRGCYC 1 cut(s) 249
Fsp4HI GCNGC 2 cut(s) 48, 405
FspBI CTAG 2 cut(s) 441, 937
GlaI GCGC 4 cut(s) 15, 331, 591, 766
GluI GCNGC 2 cut(s) 48, 405
GsaI CCCAGC 1 cut(s) 788
HaeII RGCGCY 4 cut(s) 17, 333, 593, 768
HaeIII GGCC 2 cut(s) 197, 323
HapII CCGG 1 cut(s) 243
HgaI GACGC 2 cut(s) 61, 142
HhaI GCGC 4 cut(s) 16, 332, 592, 767
Hin1I GRCGYC 3 cut(s) 14, 72, 590
Hin1II CATG 3 cut(s) 148, 589, 856
Hin6I GCGC 4 cut(s) 14, 330, 590, 765
HinP1I GCGC 4 cut(s) 14, 330, 590, 765
HincII GTYRAC 1 cut(s) 730
HindII GTYRAC 1 cut(s) 730
HindIII AAGCTT 1 cut(s) 457
HinfI GANTC 3 cut(s) 563, 651, 927
HpaI GTTAAC 1 cut(s) 730
HpaII CCGG 1 cut(s) 243
HphI GGTGA 2 cut(s) 340, 742
Hpy166II GTNNAC 1 cut(s) 730
Hpy188I TCNGA 3 cut(s) 132, 547, 650
Hpy188III TCNNGA 5 cut(s) 37, 100, 367, 376, 527
Hpy8I GTNNAC 1 cut(s) 730
Hpy99I CGWCG 3 cut(s) 34, 176, 275
HpyAV CCTTC 3 cut(s) 184, 373, 785
HpyCH4III ACNGT 4 cut(s) 34, 627, 880, 902
HpyCH4IV ACGT 2 cut(s) 171, 285
HpyCH4V TGCA 6 cut(s) 205, 425, 503, 620, 794, 872
HpyF10VI GCNNNNNNNGC 9 cut(s) 230, 239, 329, 359, 456, 500, 596, 800, 869
HpyF3I CTNAG 2 cut(s) 225, 248
HpySE526I ACGT 2 cut(s) 171, 285
Hsp92I GRCGYC 3 cut(s) 14, 72, 590
Hsp92II CATG 3 cut(s) 148, 589, 856
HspAI GCGC 4 cut(s) 14, 330, 590, 765
KasI GGCGCC 2 cut(s) 13, 589
KpnI GGTACC 1 cut(s) 697
Ksp22I TGATCA 1 cut(s) 369
KspAI GTTAAC 1 cut(s) 730
Kzo9I GATC 3 cut(s) 18, 237, 369
LmnI GCTCC 1 cut(s) 65
MaeI CTAG 2 cut(s) 441, 937
MaeII ACGT 2 cut(s) 171, 285
MaeIII GTNAC 2 cut(s) 281, 748
MalI GATC 3 cut(s) 20, 239, 371
MboI GATC 3 cut(s) 18, 237, 369
MboII GAAGA 4 cut(s) 515, 694, 702, 925
MhlI GDGCHC 1 cut(s) 249
MluCI AATT 3 cut(s) 531, 684, 706
Mly113I GGCGCC 2 cut(s) 14, 590
MlyI GAGTC 1 cut(s) 557
MmeI TCCRAC 2 cut(s) 87, 628
MnlI CCTC 4 cut(s) 288, 379, 553, 909
MseI TTAA 3 cut(s) 315, 729, 834
MslI CAYNNNNRTG 2 cut(s) 305, 857
MspI CCGG 1 cut(s) 243
MspR9I CCNGG 2 cut(s) 52, 244
Mva1269I GAATGC 2 cut(s) 509, 796
MvaI CCWGG 1 cut(s) 52
MwoI GCNNNNNNNGC 9 cut(s) 230, 239, 329, 359, 456, 500, 596, 800, 869
NarI GGCGCC 2 cut(s) 14, 590
NciI CCSGG 1 cut(s) 244
NdeII GATC 3 cut(s) 18, 237, 369
NlaIII CATG 3 cut(s) 148, 589, 856
NlaIV GGNNCC 4 cut(s) 15, 61, 591, 695
NmuCI GTSAC 1 cut(s) 748
PaqCI CACCTGC 1 cut(s) 416
PctI GAATGC 2 cut(s) 509, 796
PfeI GAWTC 2 cut(s) 651, 927
PflMI CCANNNNNTGG 1 cut(s) 745
PkrI GCNGC 2 cut(s) 49, 406
Ple19I CGATCG 1 cut(s) 21
PleI GAGTC 1 cut(s) 557
PluTI GGCGCC 2 cut(s) 17, 593
PpsI GAGTC 1 cut(s) 557
PshAI GACNNNNGTC 1 cut(s) 32
Psp6I CCWGG 1 cut(s) 50
PspEI GGTNACC 1 cut(s) 748
PspFI CCCAGC 1 cut(s) 784
PspGI CCWGG 1 cut(s) 50
PspN4I GGNNCC 4 cut(s) 15, 61, 591, 695
PstI CTGCAG 1 cut(s) 207
PstNI CAGNNNCTG 2 cut(s) 784, 809
PvuI CGATCG 1 cut(s) 21
RsaI GTAC 6 cut(s) 56, 92, 299, 584, 695, 899
RsaNI GTAC 6 cut(s) 55, 91, 298, 583, 694, 898
RseI CAYNNNNRTG 2 cut(s) 305, 857
SaqAI TTAA 3 cut(s) 315, 729, 834
SatI GCNGC 2 cut(s) 48, 405
Sau3AI GATC 3 cut(s) 18, 237, 369
SchI GAGTC 1 cut(s) 557
ScrFI CCNGG 2 cut(s) 52, 244
SduI GDGCHC 1 cut(s) 249
SfcI CTRYAG 1 cut(s) 203
SfoI GGCGCC 2 cut(s) 15, 591
SmiMI CAYNNNNRTG 2 cut(s) 305, 857
Sse9I AATT 3 cut(s) 531, 684, 706
SsiI CCGC 6 cut(s) 48, 279, 351, 405, 644, 863
SspDI GGCGCC 2 cut(s) 13, 589
SspMI CTAG 2 cut(s) 441, 937
StyD4I CCNGG 2 cut(s) 50, 242
StyI CCWWGG 1 cut(s) 883
TaaI ACNGT 4 cut(s) 34, 627, 880, 902
TaiI ACGT 2 cut(s) 174, 288
TaqI TCGA 4 cut(s) 21, 660, 670, 925
TasI AATT 3 cut(s) 531, 684, 706
TatI WGTACW 2 cut(s) 582, 897
TauI GCSGC 2 cut(s) 50, 407
TfiI GAWTC 2 cut(s) 651, 927
Tru1I TTAA 3 cut(s) 315, 729, 834
Tru9I TTAA 3 cut(s) 315, 729, 834
TscAI CASTG 4 cut(s) 256, 630, 883, 907
TseFI GTSAC 1 cut(s) 748
Tsp45I GTSAC 1 cut(s) 748
TspDTI ATGAA 4 cut(s) 203, 584, 837, 841
TspGWI ACGGA 1 cut(s) 259
TspRI CASTG 4 cut(s) 256, 630, 883, 907
Van91I CCANNNNNTGG 1 cut(s) 745
XapI RAATTY 1 cut(s) 531
XspI CTAG 2 cut(s) 441, 937
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.