MD03G1078400.v1.1

Sugar phosphate phosphate translocator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0000810
Physical Location & Seq
Reverse (-)
6348196 .. 6350626
2431 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1078400.v1.1.491

Sequence Viewer

Length: 912 bp
ATGTCGAAGTTCGTCACGGTCGGATTAATAACAGCATGGTACTCGTCGAACATCGGAGTTTTGCTGTTGAACAAGTTTCTCCTGAGCAATTACGGGTTCAAGTACCCGATTTTCTTGACCCTTTGCCACATGCTCGCGTGCTCCCTCCTCAGCTACGTAGCCATTTCGTGGATGAAGGTCGTTCCCATGCAGAGCATCAAGTCACGCGTCCAGTTCTTCAAGATATCGTCCCTCGGTCTCATCTTCTGTTTGTCTGTCGTTGGCGGGAACATCTCGCTCCGGTACCTCGCCGTGTCGTTTAACCAGGCCATCGGCGCCACCACGCCGTTCTTCACGGCTGTGTTTGCGTATATTATGACTCTCAAAAAGGAGGGCTGGGTCACGTACGTTACTCTTATTCCGGTTGTCACCGGCGTTATCATTGCCAGCGGGGGAGAACCAAGTTTTCACCTGTTTGGATTTATAATGTGTATTGGTGCTACAGCAGCAAGGGCACTCAAGTCAGTGCTTCAAGGGATACTCCTCTCCTCTGAAGGGGAAAAGCTGAATTCCATGAACCTGCTCATGTACATGGCTCCTGTAGCCGTGGCAATCCTTCTCCCTGCAGCTCTTTTGATGGAAGAGAACGTAGTTGGAATAACAATTGCACTTGCAAGAGATGACGTGTCAATCGTCTGGTACCTGGTGTTCAACTCCGCTCTTGCATATTTTGTCAATTTGACCAACTTCGTGGTAACCAAACACACTAGTGCCTTGACTCTCCAGGTGTTGGGAAATGCAAAAGGAGCGGTTGCAGTGGTGGTTTCAATTTTGATATTCAGAAATCCGGTTTCAGTGACCGGAATGCTCGGTTACGGTCTCACAGTAACAGGGGTCATCCTCTACGGCGAAGCCAAGAAACGAGGGAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPT

Protein Analysis

304

Amino Acids

32.76

Weight (kDa)

9.63

Isoelectric Point (pI)

27.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPT PF03151 8 - 295 8e-46 Triose-phosphate Transporter family
UAA PF08449 27 - 297 3.2e-12 UAA transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 464
Acc36I ACCTGC 1 cut(s) 567
Acc65I GGTACC 2 cut(s) 282, 678
AccB1I GGYRCC 3 cut(s) 282, 314, 678
AccB7I CCANNNNNTGG 2 cut(s) 168, 769
AccBSI CCGCTC 2 cut(s) 698, 788
AccII CGCG 2 cut(s) 137, 207
AciI CCGC 4 cut(s) 264, 429, 696, 788
AcsI RAATTY 1 cut(s) 547
AcuI CTGAAG 1 cut(s) 552
AcyI GRCGYC 1 cut(s) 315
AfaI GTAC 6 cut(s) 41, 104, 284, 386, 569, 680
AfiI CCNNNNNNNGG 3 cut(s) 168, 534, 769
AflIII ACRYGT 2 cut(s) 205, 663
AgsI TTSAA 6 cut(s) 70, 100, 220, 512, 691, 807
AhlI ACTAGT 1 cut(s) 746
AjiI CACGTC 1 cut(s) 664
AjnI CCWGG 3 cut(s) 303, 681, 762
AleI CACNNNNGTG 2 cut(s) 338, 747
AluBI AGCT 3 cut(s) 153, 544, 608
AluI AGCT 3 cut(s) 153, 544, 608
Alw21I GWGCWC 1 cut(s) 143
Alw26I GTCTC 2 cut(s) 242, 863
AoxI GGCC 1 cut(s) 306
ApeKI GCWGC 2 cut(s) 485, 605
ApoI RAATTY 1 cut(s) 547
AseI ATTAAT 1 cut(s) 26
Asp718I GGTACC 2 cut(s) 282, 678
AspLEI GCGC 1 cut(s) 317
AsuHPI GGTGA 2 cut(s) 400, 440
BaeGI GKGCMC 1 cut(s) 496
BanI GGYRCC 3 cut(s) 282, 314, 678
Bbv12I GWGCWC 1 cut(s) 143
BbvCI CCTCAGC 1 cut(s) 149
BbvI GCAGC 2 cut(s) 497, 617
BccI CCATC 2 cut(s) 317, 610
BceAI ACGGC 5 cut(s) 275, 310, 351, 569, 901
BcgI CGANNNNNNTGC 2 cut(s) 24, 58
BciT130I CCWGG 3 cut(s) 305, 683, 764
BciVI GTATCC 1 cut(s) 510
BcoDI GTCTC 2 cut(s) 242, 863
BcuI ACTAGT 1 cut(s) 746
BfaI CTAG 1 cut(s) 747
BfmI CTRYAG 3 cut(s) 480, 579, 603
BfoI RGCGCY 1 cut(s) 318
BfuAI ACCTGC 1 cut(s) 567
BfuI GTATCC 1 cut(s) 510
BisI GCNGC 2 cut(s) 486, 606
BlsI GCNGC 2 cut(s) 487, 607
Bme1390I CCNGG 3 cut(s) 305, 683, 764
BmgBI CACGTC 1 cut(s) 664
BmiI GGNNCC 4 cut(s) 284, 316, 576, 680
BmrFI CCNGG 3 cut(s) 305, 683, 764
BmsI GCATC 1 cut(s) 204
BpmI CTGGAG 1 cut(s) 746
Bpu10I CCTNAGC 2 cut(s) 83, 149
BpuEI CTTGAG 1 cut(s) 482
BsaAI YACGTR 2 cut(s) 157, 384
BsaHI GRCGYC 1 cut(s) 315
BsaI GGTCTC 2 cut(s) 242, 863
BsaJI CCNNGG 2 cut(s) 232, 585
BsaWI WCCGGW 4 cut(s) 279, 400, 826, 839
Bsc4I CCNNNNNNNGG 3 cut(s) 168, 534, 769
Bse118I RCCGGY 1 cut(s) 410
Bse1I ACTGG 1 cut(s) 211
Bse3DI GCAATG 1 cut(s) 420
BseBI CCWGG 3 cut(s) 305, 683, 764
BseDI CCNNGG 2 cut(s) 232, 585
BseGI GGATG 2 cut(s) 177, 876
BseLI CCNNNNNNNGG 3 cut(s) 168, 534, 769
BseMI GCAATG 1 cut(s) 420
BseMII CTCAG 2 cut(s) 74, 163
BseNI ACTGG 1 cut(s) 211
BseRI GAGGAG 3 cut(s) 137, 512, 517
BseSI GKGCMC 1 cut(s) 496
BseXI GCAGC 2 cut(s) 497, 617
BseYI CCCAGC 1 cut(s) 375
Bsh1236I CGCG 2 cut(s) 137, 207
Bsh1285I CGRYCG 1 cut(s) 21
BshFI GGCC 1 cut(s) 308
BshNI GGYRCC 3 cut(s) 282, 314, 678
BsiEI CGRYCG 1 cut(s) 21
BsiHKAI GWGCWC 1 cut(s) 143
BsiSI CCGG 5 cut(s) 280, 401, 411, 827, 840
BsiWI CGTACG 1 cut(s) 384
BslFI GGGAC 1 cut(s) 214
BslI CCNNNNNNNGG 3 cut(s) 168, 534, 769
BsmAI GTCTC 2 cut(s) 242, 863
BsmFI GGGAC 1 cut(s) 214
BsmI GAATGC 1 cut(s) 849
BsnI GGCC 1 cut(s) 308
Bso31I GGTCTC 2 cut(s) 242, 863
Bsp1286I GDGCHC 2 cut(s) 143, 496
Bsp1407I TGTACA 1 cut(s) 567
BspACI CCGC 4 cut(s) 264, 429, 696, 788
BspANI GGCC 1 cut(s) 308
BspCNI CTCAG 2 cut(s) 75, 162
BspFNI CGCG 2 cut(s) 137, 207
BspLI GGNNCC 4 cut(s) 284, 316, 576, 680
BspMAI CTGCAG 1 cut(s) 607
BspMI ACCTGC 1 cut(s) 567
BspT107I GGYRCC 3 cut(s) 282, 314, 678
BspTNI GGTCTC 2 cut(s) 242, 863
BsrBI CCGCTC 2 cut(s) 698, 788
BsrDI GCAATG 1 cut(s) 420
BsrFI RCCGGY 1 cut(s) 410
BsrGI TGTACA 1 cut(s) 567
BsrI ACTGG 1 cut(s) 211
BssAI RCCGGY 1 cut(s) 410
BssECI CCNNGG 2 cut(s) 232, 585
BssNI GRCGYC 1 cut(s) 315
Bst2UI CCWGG 3 cut(s) 305, 683, 764
Bst4CI ACNGT 3 cut(s) 19, 857, 865
Bst6I CTCTTC 1 cut(s) 615
BstACI GRCGYC 1 cut(s) 315
BstAUI TGTACA 1 cut(s) 567
BstBAI YACGTR 2 cut(s) 157, 384
BstC8I GCNNGC 3 cut(s) 135, 139, 427
BstDEI CTNAG 2 cut(s) 83, 149
BstDSI CCRYGG 1 cut(s) 585
BstEII GGTNACC 1 cut(s) 733
BstF5I GGATG 2 cut(s) 177, 876
BstFNI CGCG 2 cut(s) 137, 207
BstH2I RGCGCY 1 cut(s) 318
BstHHI GCGC 1 cut(s) 317
BstMAI GTCTC 2 cut(s) 242, 863
BstMCI CGRYCG 1 cut(s) 21
BstMWI GCNNNNNNNGC 6 cut(s) 314, 344, 485, 491, 581, 785
BstNI CCWGG 3 cut(s) 305, 683, 764
BstNSI RCATGY 1 cut(s) 133
BstPI GGTNACC 1 cut(s) 733
BstSCI CCNGG 3 cut(s) 303, 681, 762
BstSFI CTRYAG 3 cut(s) 480, 579, 603
BstSLI GKGCMC 1 cut(s) 496
BstSNI TACGTA 1 cut(s) 157
BstUI CGCG 2 cut(s) 137, 207
BstV1I GCAGC 2 cut(s) 497, 617
BstXI CCANNNNNNTGG 1 cut(s) 730
BsuI GTATCC 1 cut(s) 510
BsuRI GGCC 1 cut(s) 308
BtgI CCRYGG 1 cut(s) 585
BtrI CACGTC 1 cut(s) 664
BtsCI GGATG 2 cut(s) 177, 876
BtsI GCAGTG 1 cut(s) 801
BtsIMutI CAGTG 3 cut(s) 510, 801, 840
BveI ACCTGC 1 cut(s) 567
Cac8I GCNNGC 3 cut(s) 135, 139, 427
CfoI GCGC 1 cut(s) 317
Cfr10I RCCGGY 1 cut(s) 410
CseI GACGC 1 cut(s) 196
CsiI ACCWGGT 1 cut(s) 681
Csp6I GTAC 6 cut(s) 40, 103, 283, 385, 568, 679
CviAII CATG 6 cut(s) 36, 130, 187, 553, 565, 571
CviQI GTAC 6 cut(s) 40, 103, 283, 385, 568, 679
DdeI CTNAG 2 cut(s) 83, 149
DinI GGCGCC 1 cut(s) 316
Eam1104I CTCTTC 1 cut(s) 615
EarI CTCTTC 1 cut(s) 615
Eco105I TACGTA 1 cut(s) 157
Eco31I GGTCTC 2 cut(s) 242, 863
Eco32I GATATC 1 cut(s) 225
Eco57I CTGAAG 1 cut(s) 552
Eco91I GGTNACC 1 cut(s) 733
EcoO65I GGTNACC 1 cut(s) 733
EcoRI GAATTC 1 cut(s) 547
EcoRII CCWGG 3 cut(s) 303, 681, 762
EcoRV GATATC 1 cut(s) 225
EgeI GGCGCC 1 cut(s) 316
EheI GGCGCC 1 cut(s) 316
FaeI CATG 6 cut(s) 39, 133, 190, 556, 568, 574
FaqI GGGAC 1 cut(s) 214
FatI CATG 6 cut(s) 35, 129, 186, 552, 564, 570
FauI CCCGC 2 cut(s) 257, 422
Fnu4HI GCNGC 2 cut(s) 486, 606
FokI GGATG 2 cut(s) 184, 863
Fsp4HI GCNGC 2 cut(s) 486, 606
FspBI CTAG 1 cut(s) 747
GlaI GCGC 1 cut(s) 316
GluI GCNGC 2 cut(s) 486, 606
GsaI CCCAGC 1 cut(s) 379
GsuI CTGGAG 1 cut(s) 746
HaeII RGCGCY 1 cut(s) 318
HaeIII GGCC 1 cut(s) 308
HapII CCGG 5 cut(s) 280, 401, 411, 827, 840
HgaI GACGC 1 cut(s) 196
HhaI GCGC 1 cut(s) 317
Hin1I GRCGYC 1 cut(s) 315
Hin1II CATG 6 cut(s) 39, 133, 190, 556, 568, 574
Hin6I GCGC 1 cut(s) 315
HinP1I GCGC 1 cut(s) 315
HinfI GANTC 2 cut(s) 358, 757
HpaII CCGG 5 cut(s) 280, 401, 411, 827, 840
HphI GGTGA 2 cut(s) 400, 440
Hpy188I TCNGA 4 cut(s) 23, 56, 532, 821
Hpy188III TCNNGA 3 cut(s) 82, 115, 220
Hpy99I CGWCG 1 cut(s) 49
HpyAV CCTTC 3 cut(s) 169, 527, 605
HpyCH4III ACNGT 3 cut(s) 19, 857, 865
HpyCH4IV ACGT 5 cut(s) 156, 383, 387, 627, 663
HpyCH4V TGCA 7 cut(s) 190, 605, 647, 653, 704, 779, 794
HpyF10VI GCNNNNNNNGC 6 cut(s) 314, 344, 485, 491, 581, 785
HpyF3I CTNAG 2 cut(s) 83, 149
HpySE526I ACGT 5 cut(s) 156, 383, 387, 627, 663
Hsp92I GRCGYC 1 cut(s) 315
Hsp92II CATG 6 cut(s) 39, 133, 190, 556, 568, 574
HspAI GCGC 1 cut(s) 315
KasI GGCGCC 1 cut(s) 314
KpnI GGTACC 2 cut(s) 286, 682
LmnI GCTCC 4 cut(s) 146, 282, 580, 785
Lsp1109I GCAGC 2 cut(s) 497, 617
LweI GCATC 1 cut(s) 204
MabI ACCWGGT 1 cut(s) 681
MaeI CTAG 1 cut(s) 747
MaeII ACGT 5 cut(s) 156, 383, 387, 627, 663
MaeIII GTNAC 9 cut(s) 13, 201, 379, 388, 406, 733, 835, 851, 865
MbiI CCGCTC 2 cut(s) 698, 788
MboII GAAGA 4 cut(s) 208, 235, 322, 632
MfeI CAATTG 1 cut(s) 642
MhlI GDGCHC 2 cut(s) 143, 496
MluCI AATT 5 cut(s) 88, 547, 642, 715, 807
MluI ACGCGT 1 cut(s) 205
Mly113I GGCGCC 1 cut(s) 315
MlyI GAGTC 2 cut(s) 352, 751
MmeI TCCRAC 1 cut(s) 613
MseI TTAA 2 cut(s) 26, 300
MslI CAYNNNNRTG 3 cut(s) 338, 569, 747
MspA1I CMGCKG 1 cut(s) 429
MspI CCGG 5 cut(s) 280, 401, 411, 827, 840
MspR9I CCNGG 3 cut(s) 305, 683, 764
MunI CAATTG 1 cut(s) 642
Mva1269I GAATGC 1 cut(s) 849
MvaI CCWGG 3 cut(s) 305, 683, 764
MvnI CGCG 2 cut(s) 137, 207
MwoI GCNNNNNNNGC 6 cut(s) 314, 344, 485, 491, 581, 785
NarI GGCGCC 1 cut(s) 315
NlaIII CATG 6 cut(s) 39, 133, 190, 556, 568, 574
NlaIV GGNNCC 4 cut(s) 284, 316, 576, 680
NmuCI GTSAC 5 cut(s) 13, 201, 379, 406, 835
NspI RCATGY 1 cut(s) 133
OliI CACNNNNGTG 2 cut(s) 338, 747
PcsI WCGNNNNNNNCGW 1 cut(s) 669
PctI GAATGC 1 cut(s) 849
Pfl23II CGTACG 1 cut(s) 384
PflMI CCANNNNNTGG 2 cut(s) 168, 769
PkrI GCNGC 2 cut(s) 487, 607
PleI GAGTC 2 cut(s) 352, 751
PluTI GGCGCC 1 cut(s) 318
PpsI GAGTC 2 cut(s) 352, 751
Ppu21I YACGTR 2 cut(s) 157, 384
PshBI ATTAAT 1 cut(s) 26
PsiI TTATAA 1 cut(s) 464
Psp6I CCWGG 3 cut(s) 303, 681, 762
PspEI GGTNACC 1 cut(s) 733
PspFI CCCAGC 1 cut(s) 375
PspGI CCWGG 3 cut(s) 303, 681, 762
PspLI CGTACG 1 cut(s) 384
PspN4I GGNNCC 4 cut(s) 284, 316, 576, 680
PsrI GAACNNNNNNTAC 2 cut(s) 671, 703
PstI CTGCAG 1 cut(s) 607
RsaI GTAC 6 cut(s) 41, 104, 284, 386, 569, 680
RsaNI GTAC 6 cut(s) 40, 103, 283, 385, 568, 679
RseI CAYNNNNRTG 3 cut(s) 338, 569, 747
SaqAI TTAA 2 cut(s) 26, 300
SatI GCNGC 2 cut(s) 486, 606
SchI GAGTC 2 cut(s) 352, 751
ScrFI CCNGG 3 cut(s) 305, 683, 764
SduI GDGCHC 2 cut(s) 143, 496
SexAI ACCWGGT 1 cut(s) 681
SfaNI GCATC 1 cut(s) 204
SfcI CTRYAG 3 cut(s) 480, 579, 603
SfoI GGCGCC 1 cut(s) 316
SgrAI CRCCGGYG 1 cut(s) 410
SmiMI CAYNNNNRTG 3 cut(s) 338, 569, 747
SmlI CTYRAG 1 cut(s) 497
SmoI CTYRAG 1 cut(s) 497
SnaBI TACGTA 1 cut(s) 157
SpeI ACTAGT 1 cut(s) 746
Sse9I AATT 5 cut(s) 88, 547, 642, 715, 807
SsiI CCGC 4 cut(s) 264, 429, 696, 788
SspDI GGCGCC 1 cut(s) 314
SspMI CTAG 1 cut(s) 747
StyD4I CCNGG 3 cut(s) 303, 681, 762
TaaI ACNGT 3 cut(s) 19, 857, 865
TaiI ACGT 5 cut(s) 159, 386, 390, 630, 666
TaqI TCGA 2 cut(s) 5, 47
TaqII GACCGA 1 cut(s) 224
TasI AATT 5 cut(s) 88, 547, 642, 715, 807
TatI WGTACW 1 cut(s) 567
Tru1I TTAA 2 cut(s) 26, 300
Tru9I TTAA 2 cut(s) 26, 300
TscAI CASTG 3 cut(s) 510, 801, 840
TseFI GTSAC 5 cut(s) 13, 201, 379, 406, 835
TseI GCWGC 2 cut(s) 485, 605
Tsp45I GTSAC 5 cut(s) 13, 201, 379, 406, 835
TspDTI ATGAA 2 cut(s) 188, 569
TspRI CASTG 3 cut(s) 510, 801, 840
Van91I CCANNNNNTGG 2 cut(s) 168, 769
VspI ATTAAT 1 cut(s) 26
XapI RAATTY 1 cut(s) 547
XceI RCATGY 1 cut(s) 133
XspI CTAG 1 cut(s) 747
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.