Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0000810

Physical Location & Seq

Genomic Coordinates Reverse (-)

5568191 .. 5570374

Gene Structure 2184 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0070200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1680 bp

ATGAGCTTTACCAATTTTTTTCTTCTTATTATTACTCTAGCCTCACTTTCTGTTTTGCCTCATGGATTATCTATATCCTCGGAACAGCCAAATCCTTCCATTCAATCCATGCTTATGCAAACTTGCAACCAAATTGAAAACCAAAGTTCATGCCTCACAAAAGTGCAAGCTGAGCTCCAAAGCATAATGGGGCCTGATCAAAGTCATCAAAACGCTGCTTCTGTAAGAAATTCAATCCTAAGTGCTGCGCTTAGGCACACACTTAATCAAGCGAAATCTGCAGTTGACATGATCACAAAGTTCAATGCTCTATCCATCAGTTACAGAGAACAAGTAGCTATTGAGGATTGCCAGGAGCTCCTTGATTTCTCTGTCTCTGAGTTGGCTTGGTCTTTAGGCGAGATGAACAGAATTCGGACAGGTGACAAAAATGTTCACTATGAAGGAGATCTAAAAGCTTGGCTGAGTGCTGCCCTTAGTAACCAAGATACATGCCTTGAAGGTTTCGAGGGAACTGATAGACGGCTCGAAAATTTCATAAGGGGAAGCTTGAAGCAAGTCACACAGCTCATTGGTAATGTCTTGGCCTTGTACACTCAATTACATGCTTTACCCTTTAAACCTCCAAGGGATCATAGTATGAATACTTTGACAATTGCGAATAAGAGTTCATCGCCGGATCATAATTTTCCGGCATGGATGAGTGAGGGTGATCAAGAGCTGGTTAAGTCAAGTCCACATGATCAATCAGGTATGCATGTAGATGCTGTTGTGGCAACAGATGGGAGTGGGAAGTACCGTTCAATCACAGAAGCTGTTAATGAAGCTCCAGACCACAGCAGCAGGAGGTACATAATATATGTGAAGAAGGGGATTTATAGAGAAAACATTGACATGAAGAAGAAGAAAACCAATATCATGTTTGTAGGGGATGGAATTGGACAAACTGTGGTAACTGGTGACAGAAGTTTCATGCAAGGATGGACTACATTTAGAACTGCAACAGTTGCTGTATCCGGAAAGGGATTTATAGCAAGAGACATGACTTTTCGTAACACGGCCGGTCCTGAAAACCATCAAGGCGTGGCGCTTAGGGTTGACTCGGACCAATCTGCCTTCTTCCGATGCAGCATGGAGGGTCACCAAGACACACTGTATGCTCACTCTCTTCGCCAATTTTATCGTGAATGTGACATCTATGGTACCATAGACTTCATATTTGGCAATGGTGCCGCGGTGCTCCAAAATTGCAAAATCTACACTCGAGTCCCGCTATCACTACAAAAGGTCACCATCACGGCCCAGGGTCGGAAAGATCCGCATCAAAACACTGGATTTTCGATCCAAGATAGCTATGTTTTTGCTACTCAACCGACATATCTGGGGAGGCCATGGAAGCCATACTCTAGGACAGTTTTTATCAACACTTACATGAGTGGTCTAGTGCAGCCTAGAGGGTGGCTTGAGTGGTATGGTAACTTTGCTTTGGGCACATTGTGGTACGGCGAGTATAGAAACTATGGGCCGGGTGCATCACTATCCGGACGGGTCAAGTGGCCAGGTTACCACATCATTCAGGATGCCAACATGGCTAGTTTCTTCACGGTTCGGCGATTTATTGATGGGATGGCTTGGTTGCCGGCCACAGGAGTTAAGTTTACAGTAGGTTTGAGAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0032991 GO:0034641 GO:0034645 GO:0042254 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0071840 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L35Ae

Protein Analysis

559

Amino Acids

62.56

Weight (kDa)

8.51

Isoelectric Point (pI)

39.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMEI	PF04043	38 - 197	1.2e-26	Plant invertase/pectin methylesterase inhibitor
Pectinesterase	PF01095	255 - 542	2.3e-139	Pectinesterase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000810)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11320 AT5G05820
fragaria_vesca	FvH4_3g37700 FvH4_6g12230 FvH4_6g12230 FvH4_7g23830 FvH4_7g23830 FvH4_7g23830 FvH4_7g23830 FvH4_7g23830
malus_domestica	MD01G1145600.v1.1 MD03G1078400.v1.1 MD04G1144900.v1.1 MD07G1212700.v1.1 MD12G1158900.v1.1
prunus_persica	Prupe.2G244900_v2.0.a1 Prupe.2G244900_v2.0.a1 Prupe.2G244900_v2.0.a1 Prupe.6G063400_v2.0.a1 Prupe.6G269300_v2.0.a1 Prupe.6G269300_v2.0.a1
pyrus_communis	pycom01g16510 pycom03g06280 pycom07g19540 pycom12g15080
rosa_chinensis	RchiOBHm_Chr1g0369201 RchiOBHm_Chr3g0464031 RchiOBHm_Chr5g0067971 RchiOBHm_Chr7g0183791
rosa_laevigata	RLG00000024727 RLG00000027147 RLG00000035948
rosa_multiflora	Rmu_co8032292.1_g000001 Rmu_sc0000435.1_g000038 Rmu_sc0001203.1_g000001 Rmu_sc0004616.1_g000004 Rmu_sc0005807.1_g000004 Rmu_sc0019331.1_g000001 Rmu_sc0028685.1_g000001
rosa_roxburghii	Rroxscaffold_1G00012630 Rroxscaffold_1G00013340 Rroxscaffold_4G00287870 Rroxscaffold_4G00291440 Rroxscaffold_5G00365160 Rroxscaffold_6G00416050
rosa_rugosa	Rorug01G0348800 Rorug01G0348800 Rorug01G0348800 Rorug01G0348900 Rorug03G0070200 Rorug04G0183800 Rorug05G0386900
rosa_samantha	Rh1AG355800 Rh1BG319400 Rh1CG333400 Rh1DG350100 Rh3BG131300 Rh3CG133600 Rh3DG132600 Rh5AG445800 Rh5AG536100 Rh5BG463300 Rh5CG485200 Rh5DG477300 Rh7CG459800
rosa_wichuraiana	Rw1G031400 Rw3G010730 Rw5G041630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	1202
AccB1I	GGYRCC	2 cut(s)	1202, 1229
AccII	CGCG	1 cut(s)	1235
AccIII	TCCGGA	2 cut(s)	1016, 1541
AciI	CCGC	4 cut(s)	1233, 1235, 1271, 1319
AclWI	GGATC	4 cut(s)	639, 687, 1310, 1336
AcoI	YGGCCR	3 cut(s)	1059, 1556, 1641
AcsI	RAATTY	3 cut(s)	229, 411, 532
AdeI	CACNNNGTG	1 cut(s)	1497
AfaI	GTAC	5 cut(s)	593, 797, 851, 1204, 1502
AfiI	CCNNNNNNNGG	2 cut(s)	1308, 1646
AgsI	TTSAA	7 cut(s)	104, 137, 234, 304, 500, 553, 804
AjnI	CCWGG	3 cut(s)	351, 1302, 1558
AleI	CACNNNNGTG	1 cut(s)	161
AloI	GAACNNNNNNTCC	2 cut(s)	784, 816
Alw21I	GWGCWC	3 cut(s)	177, 360, 1242
Alw26I	GTCTC	2 cut(s)	379, 1032
AlwI	GGATC	4 cut(s)	639, 687, 1310, 1336
AlwNI	CAGNNNCTG	2 cut(s)	815, 1010
Ama87I	CYCGRG	1 cut(s)	1263
Aor13HI	TCCGGA	2 cut(s)	1016, 1541
AoxI	GGCC	8 cut(s)	191, 585, 1059, 1299, 1388, 1523, 1556, 1641
ApeKI	GCWGC	6 cut(s)	215, 245, 470, 840, 1128, 1447
ApoI	RAATTY	3 cut(s)	229, 411, 532
ArsI	GACNNNNNNTTYG	2 cut(s)	1202, 1234
Asp718I	GGTACC	1 cut(s)	1202
AspLEI	GCGC	2 cut(s)	250, 1090
AspS9I	GGNCC	5 cut(s)	191, 1064, 1105, 1300, 1523
AsuC2I	CCSGG	1 cut(s)	1527
AsuHPI	GGTGA	5 cut(s)	434, 722, 971, 1133, 1282
AvaI	CYCGRG	1 cut(s)	1263
AvaII	GGWCC	2 cut(s)	1064, 1105
BaeGI	GKGCMC	1 cut(s)	1493
BalI	TGGCCA	1 cut(s)	1558
BanI	GGYRCC	2 cut(s)	1202, 1229
BanII	GRGCYC	2 cut(s)	177, 360
Bbv12I	GWGCWC	3 cut(s)	177, 360, 1242
BbvI	GCAGC	6 cut(s)	202, 232, 457, 852, 1140, 1459
BccI	CCATC	8 cut(s)	323, 776, 926, 975, 1083, 1301, 1616, 1621
BceAI	ACGGC	4 cut(s)	539, 1074, 1314, 1519
BciT130I	CCWGG	3 cut(s)	353, 1304, 1560
BciVI	GTATCC	1 cut(s)	1024
BclI	TGATCA	4 cut(s)	196, 291, 712, 742
BcnI	CCSGG	1 cut(s)	1527
BcoDI	GTCTC	2 cut(s)	379, 1032
BfaI	CTAG	5 cut(s)	38, 1407, 1442, 1452, 1593
BfmI	CTRYAG	1 cut(s)	279
BfoI	RGCGCY	1 cut(s)	1091
BfuI	GTATCC	1 cut(s)	1024
BglI	GCCNNNNNGGC	1 cut(s)	1589
BglII	AGATCT	1 cut(s)	448
BisI	GCNGC	7 cut(s)	216, 246, 471, 841, 1129, 1233, 1448
BlpI	GCTNAGC	1 cut(s)	171
BlsI	GCNGC	7 cut(s)	217, 247, 472, 842, 1130, 1234, 1449
Bme1390I	CCNGG	4 cut(s)	353, 1304, 1527, 1560
Bme18I	GGWCC	2 cut(s)	1064, 1105
BmeT110I	CYCGRG	1 cut(s)	1263
BmgT120I	GGNCC	5 cut(s)	191, 1064, 1105, 1300, 1523
BmiI	GGNNCC	3 cut(s)	192, 1204, 1231
BmrFI	CCNGG	4 cut(s)	353, 1304, 1527, 1560
BmsI	GCATC	5 cut(s)	754, 1115, 1330, 1541, 1570
BpmI	CTGGAG	1 cut(s)	813
Bpu10I	CCTNAGC	2 cut(s)	251, 1091
Bpu1102I	GCTNAGC	1 cut(s)	171
BpuEI	CTTGAG	1 cut(s)	1484
BpuMI	CCSGG	1 cut(s)	1527
BsaBI	GATNNNNATC	1 cut(s)	1320
BsaJI	CCNNGG	6 cut(s)	78, 626, 1233, 1302, 1303, 1391
BsaWI	WCCGGW	2 cut(s)	1016, 1541
Bsc4I	CCNNNNNNNGG	2 cut(s)	1308, 1646
Bse118I	RCCGGY	2 cut(s)	1061, 1639
Bse1I	ACTGG	2 cut(s)	961, 1336
Bse3DI	GCAATG	1 cut(s)	1231
Bse8I	GATNNNNATC	1 cut(s)	1320
BseAI	TCCGGA	2 cut(s)	1016, 1541
BseBI	CCWGG	3 cut(s)	353, 1304, 1560
BseDI	CCNNGG	6 cut(s)	78, 626, 1233, 1302, 1303, 1391
BseGI	GGATG	5 cut(s)	705, 937, 986, 1585, 1632
BseJI	GATNNNNATC	1 cut(s)	1320
BseLI	CCNNNNNNNGG	2 cut(s)	1308, 1646
BseMI	GCAATG	1 cut(s)	1231
BseMII	CTCAG	3 cut(s)	162, 369, 455
BseNI	ACTGG	2 cut(s)	961, 1336
BseSI	GKGCMC	1 cut(s)	1493
BseX3I	CGGCCG	1 cut(s)	1059
BseXI	GCAGC	6 cut(s)	202, 232, 457, 852, 1140, 1459
BsgI	GTGCAG	1 cut(s)	1466
Bsh1236I	CGCG	1 cut(s)	1235
Bsh1285I	CGRYCG	1 cut(s)	1062
BshFI	GGCC	8 cut(s)	193, 587, 1061, 1301, 1390, 1525, 1558, 1643
BshNI	GGYRCC	2 cut(s)	1202, 1229
BsiEI	CGRYCG	1 cut(s)	1062
BsiHKAI	GWGCWC	3 cut(s)	177, 360, 1242
BsiHKCI	CYCGRG	1 cut(s)	1263
BsiSI	CCGG	7 cut(s)	677, 692, 1017, 1062, 1526, 1542, 1640
BslFI	GGGAC	1 cut(s)	1253
BslI	CCNNNNNNNGG	2 cut(s)	1308, 1646
BsmAI	GTCTC	2 cut(s)	379, 1032
BsmFI	GGGAC	1 cut(s)	1253
BsnI	GGCC	8 cut(s)	193, 587, 1061, 1301, 1390, 1525, 1558, 1643
BsoBI	CYCGRG	1 cut(s)	1263
Bsp1286I	GDGCHC	4 cut(s)	177, 360, 1242, 1493
Bsp13I	TCCGGA	2 cut(s)	1016, 1541
Bsp1407I	TGTACA	1 cut(s)	591
Bsp143I	GATC	9 cut(s)	196, 291, 448, 631, 679, 712, 742, 1315, 1341
Bsp1720I	GCTNAGC	1 cut(s)	171
Bsp19I	CCATGG	1 cut(s)	1391
BspACI	CCGC	4 cut(s)	1233, 1235, 1271, 1319
BspANI	GGCC	8 cut(s)	193, 587, 1061, 1301, 1390, 1525, 1558, 1643
BspCNI	CTCAG	3 cut(s)	163, 370, 456
BspEI	TCCGGA	2 cut(s)	1016, 1541
BspFNI	CGCG	1 cut(s)	1235
BspLI	GGNNCC	3 cut(s)	192, 1204, 1231
BspMAI	CTGCAG	1 cut(s)	283
BspPI	GGATC	4 cut(s)	639, 687, 1310, 1336
BspT107I	GGYRCC	2 cut(s)	1202, 1229
BsrDI	GCAATG	1 cut(s)	1231
BsrFI	RCCGGY	2 cut(s)	1061, 1639
BsrGI	TGTACA	1 cut(s)	591
BsrI	ACTGG	2 cut(s)	961, 1336
BssAI	RCCGGY	2 cut(s)	1061, 1639
BssECI	CCNNGG	6 cut(s)	78, 626, 1233, 1302, 1303, 1391
BssMI	GATC	9 cut(s)	196, 291, 448, 631, 679, 712, 742, 1315, 1341
BssT1I	CCWWGG	2 cut(s)	626, 1391
Bst2UI	CCWGG	3 cut(s)	353, 1304, 1560
Bst4CI	ACNGT	7 cut(s)	800, 949, 1006, 1155, 1414, 1606, 1663
Bst6I	CTCTTC	1 cut(s)	1173
BstAPI	GCANNNNNTGC	1 cut(s)	1007
BstAUI	TGTACA	1 cut(s)	591
BstC8I	GCNNGC	2 cut(s)	168, 1641
BstDEI	CTNAG	7 cut(s)	171, 239, 251, 378, 464, 476, 1091
BstDSI	CCRYGG	2 cut(s)	1233, 1391
BstEII	GGTNACC	3 cut(s)	1139, 1288, 1562
BstF5I	GGATG	5 cut(s)	705, 937, 986, 1585, 1632
BstFNI	CGCG	1 cut(s)	1235
BstH2I	RGCGCY	1 cut(s)	1091
BstHHI	GCGC	2 cut(s)	250, 1090
BstKTI	GATC	9 cut(s)	199, 294, 451, 634, 682, 715, 745, 1318, 1344
BstMAI	GTCTC	2 cut(s)	379, 1032
BstMBI	GATC	9 cut(s)	196, 291, 448, 631, 679, 712, 742, 1315, 1341
BstMCI	CGRYCG	1 cut(s)	1062
BstMWI	GCNNNNNNNGC	6 cut(s)	172, 278, 773, 1007, 1396, 1589
BstNI	CCWGG	3 cut(s)	353, 1304, 1560
BstNSI	RCATGY	3 cut(s)	495, 608, 761
BstPI	GGTNACC	3 cut(s)	1139, 1288, 1562
BstSCI	CCNGG	4 cut(s)	351, 1302, 1525, 1558
BstSFI	CTRYAG	1 cut(s)	279
BstSLI	GKGCMC	1 cut(s)	1493
BstUI	CGCG	1 cut(s)	1235
BstV1I	GCAGC	6 cut(s)	202, 232, 457, 852, 1140, 1459
BstX2I	RGATCY	2 cut(s)	448, 1315
BstYI	RGATCY	2 cut(s)	448, 1315
BstZI	CGGCCG	1 cut(s)	1059
BsuI	GTATCC	1 cut(s)	1024
BsuRI	GGCC	8 cut(s)	193, 587, 1061, 1301, 1390, 1525, 1558, 1643
BtgI	CCRYGG	2 cut(s)	1233, 1391
BtgZI	GCGATG	1 cut(s)	657
BtsCI	GGATG	5 cut(s)	705, 937, 986, 1585, 1632
BtsIMutI	CAGTG	2 cut(s)	1151, 1329
Cac8I	GCNNGC	2 cut(s)	168, 1641
CaiI	CAGNNNCTG	2 cut(s)	815, 1010
CfoI	GCGC	2 cut(s)	250, 1090
Cfr10I	RCCGGY	2 cut(s)	1061, 1639
Cfr13I	GGNCC	5 cut(s)	191, 1064, 1105, 1300, 1523
Cfr42I	CCGCGG	1 cut(s)	1236
Csp6I	GTAC	5 cut(s)	592, 796, 850, 1203, 1501
CviQI	GTAC	5 cut(s)	592, 796, 850, 1203, 1501
DdeI	CTNAG	7 cut(s)	171, 239, 251, 378, 464, 476, 1091
DpnI	GATC	9 cut(s)	198, 293, 450, 633, 681, 714, 744, 1317, 1343
DpnII	GATC	9 cut(s)	196, 291, 448, 631, 679, 712, 742, 1315, 1341
DraI	TTTAAA	1 cut(s)	619
DraIII	CACNNNGTG	1 cut(s)	1497
EaeI	YGGCCR	3 cut(s)	1059, 1556, 1641
EagI	CGGCCG	1 cut(s)	1059
Eam1104I	CTCTTC	1 cut(s)	1173
EarI	CTCTTC	1 cut(s)	1173
Ecl136II	GAGCTC	2 cut(s)	175, 358
EclXI	CGGCCG	1 cut(s)	1059
Eco130I	CCWWGG	2 cut(s)	626, 1391
Eco24I	GRGCYC	2 cut(s)	177, 360
Eco47I	GGWCC	2 cut(s)	1064, 1105
Eco52I	CGGCCG	1 cut(s)	1059
Eco53kI	GAGCTC	2 cut(s)	175, 358
Eco88I	CYCGRG	1 cut(s)	1263
Eco91I	GGTNACC	3 cut(s)	1139, 1288, 1562
EcoICRI	GAGCTC	2 cut(s)	175, 358
EcoO109I	RGGNCCY	1 cut(s)	191
EcoO65I	GGTNACC	3 cut(s)	1139, 1288, 1562
EcoRI	GAATTC	1 cut(s)	411
EcoRII	CCWGG	3 cut(s)	351, 1302, 1558
EcoT14I	CCWWGG	2 cut(s)	626, 1391
EcoT22I	ATGCAT	1 cut(s)	759
EcoT38I	GRGCYC	2 cut(s)	177, 360
ErhI	CCWWGG	2 cut(s)	626, 1391
FaqI	GGGAC	1 cut(s)	1253
FauI	CCCGC	1 cut(s)	1278
FbaI	TGATCA	4 cut(s)	196, 291, 712, 742
Fnu4HI	GCNGC	7 cut(s)	216, 246, 471, 841, 1129, 1233, 1448
FokI	GGATG	5 cut(s)	712, 944, 993, 1592, 1639
FriOI	GRGCYC	2 cut(s)	177, 360
Fsp4HI	GCNGC	7 cut(s)	216, 246, 471, 841, 1129, 1233, 1448
FspBI	CTAG	5 cut(s)	38, 1407, 1442, 1452, 1593
GlaI	GCGC	2 cut(s)	249, 1089
GluI	GCNGC	7 cut(s)	216, 246, 471, 841, 1129, 1233, 1448
GsuI	CTGGAG	1 cut(s)	813
HaeII	RGCGCY	1 cut(s)	1091
HaeIII	GGCC	8 cut(s)	193, 587, 1061, 1301, 1390, 1525, 1558, 1643
HapII	CCGG	7 cut(s)	677, 692, 1017, 1062, 1526, 1542, 1640
HhaI	GCGC	2 cut(s)	250, 1090
Hin6I	GCGC	2 cut(s)	248, 1088
HinP1I	GCGC	2 cut(s)	248, 1088
HincII	GTYRAC	2 cut(s)	286, 1099
HindII	GTYRAC	2 cut(s)	286, 1099
HindIII	AAGCTT	2 cut(s)	456, 547
HinfI	GANTC	2 cut(s)	1100, 1266
HpaII	CCGG	7 cut(s)	677, 692, 1017, 1062, 1526, 1542, 1640
HphI	GGTGA	5 cut(s)	434, 722, 971, 1133, 1282
Hpy166II	GTNNAC	6 cut(s)	286, 436, 594, 737, 1099, 1659
Hpy188I	TCNGA	6 cut(s)	82, 379, 417, 1105, 1124, 1311
Hpy188III	TCNNGA	7 cut(s)	716, 830, 1017, 1067, 1184, 1542, 1577
Hpy8I	GTNNAC	6 cut(s)	286, 436, 594, 737, 1099, 1659
HpyAV	CCTTC	5 cut(s)	105, 437, 494, 862, 1126
HpyCH4III	ACNGT	7 cut(s)	800, 949, 1006, 1155, 1414, 1606, 1663
HpyF10VI	GCNNNNNNNGC	6 cut(s)	172, 278, 773, 1007, 1396, 1589
HpyF3I	CTNAG	7 cut(s)	171, 239, 251, 378, 464, 476, 1091
HspAI	GCGC	2 cut(s)	248, 1088
Kpn2I	TCCGGA	2 cut(s)	1016, 1541
KpnI	GGTACC	1 cut(s)	1206
KroI	GCCGGC	1 cut(s)	1639
KroNI	GCCGGC	1 cut(s)	1641
Ksp22I	TGATCA	4 cut(s)	196, 291, 712, 742
KspI	CCGCGG	1 cut(s)	1236
Kzo9I	GATC	9 cut(s)	196, 291, 448, 631, 679, 712, 742, 1315, 1341
LmnI	GCTCC	5 cut(s)	180, 355, 363, 832, 1245
Lsp1109I	GCAGC	6 cut(s)	202, 232, 457, 852, 1140, 1459
LweI	GCATC	5 cut(s)	754, 1115, 1330, 1541, 1570
MaeI	CTAG	5 cut(s)	38, 1407, 1442, 1452, 1593
MalI	GATC	9 cut(s)	198, 293, 450, 633, 681, 714, 744, 1317, 1343
MboI	GATC	9 cut(s)	196, 291, 448, 631, 679, 712, 742, 1315, 1341
MboII	GAAGA	8 cut(s)	14, 877, 910, 913, 916, 1111, 1160, 1591
MfeI	CAATTG	1 cut(s)	654
MflI	RGATCY	2 cut(s)	448, 1315
MhlI	GDGCHC	4 cut(s)	177, 360, 1242, 1493
MlsI	TGGCCA	1 cut(s)	1558
MluNI	TGGCCA	1 cut(s)	1558
MlyI	GAGTC	2 cut(s)	1094, 1275
MmeI	TCCRAC	1 cut(s)	1289
Mox20I	TGGCCA	1 cut(s)	1558
Mph1103I	ATGCAT	1 cut(s)	759
MroI	TCCGGA	2 cut(s)	1016, 1541
MroNI	GCCGGC	1 cut(s)	1639
MscI	TGGCCA	1 cut(s)	1558
MseI	TTAA	5 cut(s)	264, 618, 726, 819, 1653
MslI	CAYNNNNRTG	5 cut(s)	113, 161, 762, 893, 1430
Msp20I	TGGCCA	1 cut(s)	1558
MspA1I	CMGCKG	1 cut(s)	1235
MspI	CCGG	7 cut(s)	677, 692, 1017, 1062, 1526, 1542, 1640
MspR9I	CCNGG	4 cut(s)	353, 1304, 1527, 1560
MunI	CAATTG	1 cut(s)	654
MvaI	CCWGG	3 cut(s)	353, 1304, 1560
MvnI	CGCG	1 cut(s)	1235
MwoI	GCNNNNNNNGC	6 cut(s)	172, 278, 773, 1007, 1396, 1589
NaeI	GCCGGC	1 cut(s)	1641
NciI	CCSGG	1 cut(s)	1527
NcoI	CCATGG	1 cut(s)	1391
NdeII	GATC	9 cut(s)	196, 291, 448, 631, 679, 712, 742, 1315, 1341
NgoMIV	GCCGGC	1 cut(s)	1639
NlaIV	GGNNCC	3 cut(s)	192, 1204, 1231
NmuCI	GTSAC	6 cut(s)	422, 559, 959, 1139, 1190, 1288
NsiI	ATGCAT	1 cut(s)	759
NspI	RCATGY	3 cut(s)	495, 608, 761
OliI	CACNNNNGTG	1 cut(s)	161
PaeR7I	CTCGAG	1 cut(s)	1263
PasI	CCCWGGG	1 cut(s)	1303
PdiI	GCCGGC	1 cut(s)	1641
PkrI	GCNGC	7 cut(s)	217, 247, 472, 842, 1130, 1234, 1449
PleI	GAGTC	2 cut(s)	1094, 1274
PpsI	GAGTC	2 cut(s)	1094, 1274
Psp124BI	GAGCTC	2 cut(s)	177, 360
Psp6I	CCWGG	3 cut(s)	351, 1302, 1558
PspEI	GGTNACC	3 cut(s)	1139, 1288, 1562
PspGI	CCWGG	3 cut(s)	351, 1302, 1558
PspN4I	GGNNCC	3 cut(s)	192, 1204, 1231
PspPI	GGNCC	5 cut(s)	191, 1064, 1105, 1300, 1523
PspXI	VCTCGAGB	1 cut(s)	1263
PstI	CTGCAG	1 cut(s)	283
PstNI	CAGNNNCTG	2 cut(s)	815, 1010
PsuI	RGATCY	2 cut(s)	448, 1315
RsaI	GTAC	5 cut(s)	593, 797, 851, 1204, 1502
RsaNI	GTAC	5 cut(s)	592, 796, 850, 1203, 1501
RseI	CAYNNNNRTG	5 cut(s)	113, 161, 762, 893, 1430
SacI	GAGCTC	2 cut(s)	177, 360
SacII	CCGCGG	1 cut(s)	1236
SaqAI	TTAA	5 cut(s)	264, 618, 726, 819, 1653
SatI	GCNGC	7 cut(s)	216, 246, 471, 841, 1129, 1233, 1448
Sau3AI	GATC	9 cut(s)	196, 291, 448, 631, 679, 712, 742, 1315, 1341
Sau96I	GGNCC	5 cut(s)	191, 1064, 1105, 1300, 1523
SchI	GAGTC	2 cut(s)	1094, 1275
ScrFI	CCNGG	4 cut(s)	353, 1304, 1527, 1560
SduI	GDGCHC	4 cut(s)	177, 360, 1242, 1493
SfaNI	GCATC	5 cut(s)	754, 1115, 1330, 1541, 1570
SfcI	CTRYAG	1 cut(s)	279
Sfr274I	CTCGAG	1 cut(s)	1263
Sfr303I	CCGCGG	1 cut(s)	1236
SgrBI	CCGCGG	1 cut(s)	1236
SinI	GGWCC	2 cut(s)	1064, 1105
SlaI	CTCGAG	1 cut(s)	1263
SmiMI	CAYNNNNRTG	5 cut(s)	113, 161, 762, 893, 1430
SmlI	CTYRAG	2 cut(s)	1263, 1463
SmoI	CTYRAG	2 cut(s)	1263, 1463
SsiI	CCGC	4 cut(s)	1233, 1235, 1271, 1319
SspMI	CTAG	5 cut(s)	38, 1407, 1442, 1452, 1593
SstI	GAGCTC	2 cut(s)	177, 360
StyD4I	CCNGG	4 cut(s)	351, 1302, 1525, 1558
StyI	CCWWGG	2 cut(s)	626, 1391
TaaI	ACNGT	7 cut(s)	800, 949, 1006, 1155, 1414, 1606, 1663
TaqI	TCGA	4 cut(s)	507, 528, 1264, 1340
TatI	WGTACW	1 cut(s)	591
TauI	GCSGC	1 cut(s)	1235
Tru1I	TTAA	5 cut(s)	264, 618, 726, 819, 1653
Tru9I	TTAA	5 cut(s)	264, 618, 726, 819, 1653
TscAI	CASTG	2 cut(s)	1158, 1336
TseFI	GTSAC	6 cut(s)	422, 559, 959, 1139, 1190, 1288
TseI	GCWGC	6 cut(s)	215, 245, 470, 840, 1128, 1447
Tsp45I	GTSAC	6 cut(s)	422, 559, 959, 1139, 1190, 1288
TspRI	CASTG	2 cut(s)	1158, 1336
VpaK11BI	GGWCC	2 cut(s)	1064, 1105
XapI	RAATTY	3 cut(s)	229, 411, 532
XceI	RCATGY	3 cut(s)	495, 608, 761
XhoI	CTCGAG	1 cut(s)	1263
XspI	CTAG	5 cut(s)	38, 1407, 1442, 1452, 1593
Zsp2I	ATGCAT	1 cut(s)	759

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.