RLG00000035948

Sugar phosphate phosphate translocator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000810
Physical Location & Seq
Forward (+)
73929529 .. 73931704
2176 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000035948

Sequence Viewer

Length: 945 bp
ATGTCGTCGGACCCGAAACCAGCAACAATGTCGACGAGCCGGGTCTTCACCGTGGGGTTGATAACGGCATGGTATTCATCCAATATAGGAGTTCTGCTATTGAACAAGTTCCTCCTAACCAATTACGGGTTCAAGTACCCGATCTTCCTGACCCTCTGCCACATGCTGGCTTGCTCTTTCTTAAGCTACGTTGCCATTTCGTGGCTCAAGGTGGTTCCCATGCAGAGCATCAGGTCGCGGGTTCAGTTCGTCAAGATATCCTCGCTCGGTTTCATCTTCTGTTTGTCGGTCGTCGGCGGGAACATCTCGCTCCGGTATCTGGCGGTGTCGTTCAACCAGGCGGTGGGCGCCACGACGCCGTTTTTCACGGCGGTTTTTGCGTACTTGATGACTCTGAAGAAGGAAGGCTGGCTCACGTACCTTACTCTTGTACCTGTCGTCACCGGCGTTATTATTGCCAGCGGGGGAGAGCCAAGTTTTCATCTCTTTGGATTTATAATGTGCATTGCTGCAACAGCAGCACGGGCGCTCAAGTCAGTTCTTCAAGGGATACTACTGTCTTCTGAAGCGGAAAAGCTAAATTCTATGAACCTCCTCATGTACATGGGACCTGTAGCTTGTGTAATTCTTCTGCCTGCGGCACTTTGGATGGAACAAGATGTGGTTGGGATAACCATTGCTCTTGCAAGAGATGATGTGAGCATCATATGGTATCTAGTATTCAATTCTGCCCTTGCGTACTTTGTGAATTTGACCAACTTCTTGGTAACCAAACACACAAGTCCCCTGACTCTCCAGGTGTTGGGAAATGCAAAAGGAGCTGTTGCTGTGGTTGTTTCAATTTTGATATTCAGAAATCCAGTATCAGTAACTGGGATGCTGGGTTACGGTCTCACAGTAACAGGAGTAATCCTCTACAGTGAAGCCAAAAAAAGGGGTAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPT

Protein Analysis

315

Amino Acids

34.14

Weight (kDa)

9.59

Isoelectric Point (pI)

38.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPT PF03151 20 - 307 8.3e-47 Triose-phosphate Transporter family
UAA PF08449 36 - 309 7.3e-11 UAA transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 497
AccB1I GGYRCC 1 cut(s) 347
AccB7I CCANNNNNTGG 4 cut(s) 166, 201, 343, 802
AccI GTMKAC 1 cut(s) 32
AccII CGCG 1 cut(s) 238
AciI CCGC 8 cut(s) 238, 297, 323, 341, 371, 462, 569, 638
AcsI RAATTY 2 cut(s) 580, 748
AcuI CTGAAG 2 cut(s) 416, 585
AcyI GRCGYC 2 cut(s) 348, 356
AfaI GTAC 6 cut(s) 137, 383, 419, 432, 602, 740
AfiI CCNNNNNNNGG 7 cut(s) 126, 166, 201, 319, 343, 802, 933
AflII CTTAAG 1 cut(s) 181
AgsI TTSAA 6 cut(s) 103, 133, 334, 545, 724, 840
AjnI CCWGG 2 cut(s) 336, 795
AjuI GAANNNNNNNTTGG 2 cut(s) 113, 145
AluBI AGCT 4 cut(s) 186, 577, 617, 821
AluI AGCT 4 cut(s) 186, 577, 617, 821
Alw26I GTCTC 1 cut(s) 896
AlwNI CAGNNNCTG 1 cut(s) 872
ApeKI GCWGC 2 cut(s) 509, 518
ApoI RAATTY 2 cut(s) 580, 748
Asp700I GAANNNNTTC 1 cut(s) 107
AspLEI GCGC 2 cut(s) 350, 529
AspS9I GGNCC 2 cut(s) 10, 608
AsuC2I CCSGG 1 cut(s) 41
AsuHPI GGTGA 2 cut(s) 40, 433
AvaII GGWCC 2 cut(s) 10, 608
BaeI ACNNNNGTAYC 4 cut(s) 414, 447, 542, 575
BanI GGYRCC 1 cut(s) 347
BarI GAAGNNNNNNTAC 2 cut(s) 128, 160
BbsI GAAGAC 2 cut(s) 37, 552
BbvI GCAGC 2 cut(s) 496, 530
BccI CCATC 1 cut(s) 643
BceAI ACGGC 3 cut(s) 81, 343, 384
BcgI CGANNNNNNTGC 2 cut(s) 12, 46
BciT130I CCWGG 2 cut(s) 338, 797
BciVI GTATCC 1 cut(s) 543
BcnI CCSGG 1 cut(s) 41
BcoDI GTCTC 1 cut(s) 896
BfaI CTAG 1 cut(s) 716
BfmI CTRYAG 2 cut(s) 612, 916
BfoI RGCGCY 2 cut(s) 351, 530
BfrI CTTAAG 1 cut(s) 181
BfuI GTATCC 1 cut(s) 543
BisI GCNGC 3 cut(s) 510, 519, 639
BlsI GCNGC 3 cut(s) 511, 520, 640
Bme1390I CCNGG 3 cut(s) 41, 338, 797
Bme18I GGWCC 2 cut(s) 10, 608
BmgT120I GGNCC 2 cut(s) 10, 608
BmiI GGNNCC 4 cut(s) 12, 216, 349, 609
BmrFI CCNGG 3 cut(s) 41, 338, 797
BmrI ACTGGG 1 cut(s) 882
BmsI GCATC 3 cut(s) 237, 711, 867
BmuI ACTGGG 1 cut(s) 882
BpiI GAAGAC 2 cut(s) 37, 552
BplI GAGNNNNNCTC 2 cut(s) 897, 929
BpmI CTGGAG 1 cut(s) 779
BpuEI CTTGAG 2 cut(s) 191, 515
BpuMI CCSGG 1 cut(s) 41
BsaAI YACGTR 1 cut(s) 417
BsaHI GRCGYC 2 cut(s) 348, 356
BsaI GGTCTC 1 cut(s) 896
BsaJI CCNNGG 1 cut(s) 51
BsaWI WCCGGW 1 cut(s) 312
Bsc4I CCNNNNNNNGG 7 cut(s) 126, 166, 201, 319, 343, 802, 933
Bse118I RCCGGY 1 cut(s) 443
Bse1I ACTGG 2 cut(s) 860, 877
Bse3DI GCAATG 2 cut(s) 504, 675
BseBI CCWGG 2 cut(s) 338, 797
BseDI CCNNGG 1 cut(s) 51
BseGI GGATG 3 cut(s) 77, 654, 882
BseLI CCNNNNNNNGG 7 cut(s) 126, 166, 201, 319, 343, 802, 933
BseMI GCAATG 2 cut(s) 504, 675
BseNI ACTGG 2 cut(s) 860, 877
BseRI GAGGAG 1 cut(s) 584
BseXI GCAGC 2 cut(s) 496, 530
BseYI CCCAGC 1 cut(s) 880
Bsh1236I CGCG 1 cut(s) 238
Bsh1285I CGRYCG 1 cut(s) 291
BshNI GGYRCC 1 cut(s) 347
BsiEI CGRYCG 1 cut(s) 291
BsiSI CCGG 3 cut(s) 40, 313, 444
BslFI GGGAC 2 cut(s) 621, 768
BslI CCNNNNNNNGG 7 cut(s) 126, 166, 201, 319, 343, 802, 933
BsmAI GTCTC 1 cut(s) 896
BsmFI GGGAC 2 cut(s) 621, 768
Bso31I GGTCTC 1 cut(s) 896
Bsp1407I TGTACA 1 cut(s) 600
Bsp143I GATC 1 cut(s) 141
BspACI CCGC 8 cut(s) 238, 297, 323, 341, 371, 462, 569, 638
BspFNI CGCG 1 cut(s) 238
BspLI GGNNCC 4 cut(s) 12, 216, 349, 609
BspT107I GGYRCC 1 cut(s) 347
BspTI CTTAAG 1 cut(s) 181
BspTNI GGTCTC 1 cut(s) 896
BsrDI GCAATG 2 cut(s) 504, 675
BsrFI RCCGGY 1 cut(s) 443
BsrGI TGTACA 1 cut(s) 600
BsrI ACTGG 2 cut(s) 860, 877
BssAI RCCGGY 1 cut(s) 443
BssECI CCNNGG 1 cut(s) 51
BssMI GATC 1 cut(s) 141
BssNI GRCGYC 2 cut(s) 348, 356
Bst2UI CCWGG 2 cut(s) 338, 797
Bst4CI ACNGT 5 cut(s) 52, 558, 890, 898, 920
BstACI GRCGYC 2 cut(s) 348, 356
BstAFI CTTAAG 1 cut(s) 181
BstAUI TGTACA 1 cut(s) 600
BstBAI YACGTR 1 cut(s) 417
BstC8I GCNNGC 5 cut(s) 168, 172, 410, 460, 636
BstDSI CCRYGG 1 cut(s) 51
BstEII GGTNACC 1 cut(s) 766
BstF5I GGATG 3 cut(s) 77, 654, 882
BstFNI CGCG 1 cut(s) 238
BstH2I RGCGCY 2 cut(s) 351, 530
BstHHI GCGC 2 cut(s) 350, 529
BstKTI GATC 1 cut(s) 144
BstMAI GTCTC 1 cut(s) 896
BstMBI GATC 1 cut(s) 141
BstMCI CGRYCG 1 cut(s) 291
BstMWI GCNNNNNNNGC 6 cut(s) 347, 377, 515, 518, 524, 818
BstNI CCWGG 2 cut(s) 338, 797
BstNSI RCATGY 1 cut(s) 166
BstPI GGTNACC 1 cut(s) 766
BstSCI CCNGG 3 cut(s) 39, 336, 795
BstSFI CTRYAG 2 cut(s) 612, 916
BstUI CGCG 1 cut(s) 238
BstV1I GCAGC 2 cut(s) 496, 530
BstV2I GAAGAC 2 cut(s) 37, 552
BstXI CCANNNNNNTGG 1 cut(s) 763
BsuI GTATCC 1 cut(s) 543
BtgI CCRYGG 1 cut(s) 51
BtsCI GGATG 3 cut(s) 77, 654, 882
BtsIMutI CAGTG 1 cut(s) 925
Cac8I GCNNGC 5 cut(s) 168, 172, 410, 460, 636
CaiI CAGNNNCTG 1 cut(s) 872
CfoI GCGC 2 cut(s) 350, 529
Cfr10I RCCGGY 1 cut(s) 443
Cfr13I GGNCC 2 cut(s) 10, 608
CseI GACGC 1 cut(s) 364
Csp6I GTAC 6 cut(s) 136, 382, 418, 431, 601, 739
CviAII CATG 5 cut(s) 69, 163, 220, 598, 604
CviQI GTAC 6 cut(s) 136, 382, 418, 431, 601, 739
DinI GGCGCC 1 cut(s) 349
DpnI GATC 1 cut(s) 143
DpnII GATC 1 cut(s) 141
Eco31I GGTCTC 1 cut(s) 896
Eco32I GATATC 1 cut(s) 258
Eco47I GGWCC 2 cut(s) 10, 608
Eco57I CTGAAG 2 cut(s) 416, 585
Eco91I GGTNACC 1 cut(s) 766
EcoO109I RGGNCCY 1 cut(s) 608
EcoO65I GGTNACC 1 cut(s) 766
EcoRII CCWGG 2 cut(s) 336, 795
EcoRV GATATC 1 cut(s) 258
EgeI GGCGCC 1 cut(s) 349
EheI GGCGCC 1 cut(s) 349
FaeI CATG 5 cut(s) 72, 166, 223, 601, 607
FaqI GGGAC 2 cut(s) 621, 768
FatI CATG 5 cut(s) 68, 162, 219, 597, 603
FauI CCCGC 3 cut(s) 231, 290, 455
FauNDI CATATG 1 cut(s) 707
FblI GTMKAC 1 cut(s) 32
Fnu4HI GCNGC 3 cut(s) 510, 519, 639
FokI GGATG 3 cut(s) 64, 661, 889
Fsp4HI GCNGC 3 cut(s) 510, 519, 639
FspBI CTAG 1 cut(s) 716
GlaI GCGC 2 cut(s) 349, 528
GluI GCNGC 3 cut(s) 510, 519, 639
GsaI CCCAGC 1 cut(s) 884
GsuI CTGGAG 1 cut(s) 779
HaeII RGCGCY 2 cut(s) 351, 530
HapII CCGG 3 cut(s) 40, 313, 444
HgaI GACGC 1 cut(s) 364
HhaI GCGC 2 cut(s) 350, 529
Hin1I GRCGYC 2 cut(s) 348, 356
Hin1II CATG 5 cut(s) 72, 166, 223, 601, 607
Hin6I GCGC 2 cut(s) 348, 527
HinP1I GCGC 2 cut(s) 348, 527
HincII GTYRAC 1 cut(s) 33
HindII GTYRAC 1 cut(s) 33
HinfI GANTC 2 cut(s) 391, 790
HpaII CCGG 3 cut(s) 40, 313, 444
HphI GGTGA 2 cut(s) 40, 433
Hpy166II GTNNAC 1 cut(s) 33
Hpy188I TCNGA 4 cut(s) 10, 396, 565, 854
Hpy188III TCNNGA 2 cut(s) 148, 253
Hpy8I GTNNAC 1 cut(s) 33
Hpy99I CGWCG 4 cut(s) 10, 37, 296, 358
HpyAV CCTTC 2 cut(s) 394, 398
HpyCH4III ACNGT 5 cut(s) 52, 558, 890, 898, 920
HpyCH4IV ACGT 2 cut(s) 189, 416
HpyCH4V TGCA 5 cut(s) 223, 504, 512, 686, 812
HpyF10VI GCNNNNNNNGC 6 cut(s) 347, 377, 515, 518, 524, 818
HpySE526I ACGT 2 cut(s) 189, 416
Hsp92I GRCGYC 2 cut(s) 348, 356
Hsp92II CATG 5 cut(s) 72, 166, 223, 601, 607
HspAI GCGC 2 cut(s) 348, 527
KasI GGCGCC 1 cut(s) 347
Kzo9I GATC 1 cut(s) 141
LmnI GCTCC 2 cut(s) 315, 818
Lsp1109I GCAGC 2 cut(s) 496, 530
LweI GCATC 3 cut(s) 237, 711, 867
MaeI CTAG 1 cut(s) 716
MaeII ACGT 2 cut(s) 189, 416
MaeIII GTNAC 5 cut(s) 439, 766, 868, 884, 898
MalI GATC 1 cut(s) 143
MboI GATC 1 cut(s) 141
MboII GAAGA 7 cut(s) 37, 136, 268, 409, 533, 552, 620
MluCI AATT 6 cut(s) 121, 580, 624, 724, 748, 840
Mly113I GGCGCC 1 cut(s) 348
MlyI GAGTC 2 cut(s) 385, 784
MnlI CCTC 6 cut(s) 122, 164, 271, 602, 605, 923
MroXI GAANNNNTTC 1 cut(s) 107
MseI TTAA 1 cut(s) 182
MslI CAYNNNNRTG 1 cut(s) 602
MspA1I CMGCKG 1 cut(s) 462
MspCI CTTAAG 1 cut(s) 181
MspI CCGG 3 cut(s) 40, 313, 444
MspR9I CCNGG 3 cut(s) 41, 338, 797
MvaI CCWGG 2 cut(s) 338, 797
MvnI CGCG 1 cut(s) 238
MwoI GCNNNNNNNGC 6 cut(s) 347, 377, 515, 518, 524, 818
NarI GGCGCC 1 cut(s) 348
NciI CCSGG 1 cut(s) 41
NdeI CATATG 1 cut(s) 707
NdeII GATC 1 cut(s) 141
NlaIII CATG 5 cut(s) 72, 166, 223, 601, 607
NlaIV GGNNCC 4 cut(s) 12, 216, 349, 609
NmuCI GTSAC 1 cut(s) 439
NspI RCATGY 1 cut(s) 166
PcsI WCGNNNNNNNCGW 2 cut(s) 11, 444
PdmI GAANNNNTTC 1 cut(s) 107
PflMI CCANNNNNTGG 4 cut(s) 166, 201, 343, 802
PkrI GCNGC 3 cut(s) 511, 520, 640
PleI GAGTC 2 cut(s) 385, 784
PluTI GGCGCC 1 cut(s) 351
PpsI GAGTC 2 cut(s) 385, 784
Ppu21I YACGTR 1 cut(s) 417
PpuMI RGGWCCY 1 cut(s) 608
PsiI TTATAA 1 cut(s) 497
Psp5II RGGWCCY 1 cut(s) 608
Psp6I CCWGG 2 cut(s) 336, 795
PspEI GGTNACC 1 cut(s) 766
PspFI CCCAGC 1 cut(s) 880
PspGI CCWGG 2 cut(s) 336, 795
PspN4I GGNNCC 4 cut(s) 12, 216, 349, 609
PspPI GGNCC 2 cut(s) 10, 608
PspPPI RGGWCCY 1 cut(s) 608
PstNI CAGNNNCTG 1 cut(s) 872
RsaI GTAC 6 cut(s) 137, 383, 419, 432, 602, 740
RsaNI GTAC 6 cut(s) 136, 382, 418, 431, 601, 739
RseI CAYNNNNRTG 1 cut(s) 602
SalI GTCGAC 1 cut(s) 31
SaqAI TTAA 1 cut(s) 182
SatI GCNGC 3 cut(s) 510, 519, 639
Sau3AI GATC 1 cut(s) 141
Sau96I GGNCC 2 cut(s) 10, 608
SchI GAGTC 2 cut(s) 385, 784
ScrFI CCNGG 3 cut(s) 41, 338, 797
SfaNI GCATC 3 cut(s) 237, 711, 867
SfcI CTRYAG 2 cut(s) 612, 916
SfoI GGCGCC 1 cut(s) 349
SgrAI CRCCGGYG 1 cut(s) 443
SinI GGWCC 2 cut(s) 10, 608
SmiMI CAYNNNNRTG 1 cut(s) 602
SmlI CTYRAG 3 cut(s) 181, 206, 530
SmoI CTYRAG 3 cut(s) 181, 206, 530
Sse9I AATT 6 cut(s) 121, 580, 624, 724, 748, 840
SsiI CCGC 8 cut(s) 238, 297, 323, 341, 371, 462, 569, 638
SspDI GGCGCC 1 cut(s) 347
SspMI CTAG 1 cut(s) 716
StyD4I CCNGG 3 cut(s) 39, 336, 795
TaaI ACNGT 5 cut(s) 52, 558, 890, 898, 920
TaiI ACGT 2 cut(s) 192, 419
TaqI TCGA 1 cut(s) 32
TaqII GACCGA 1 cut(s) 277
TasI AATT 6 cut(s) 121, 580, 624, 724, 748, 840
TatI WGTACW 1 cut(s) 600
TauI GCSGC 1 cut(s) 641
Tru1I TTAA 1 cut(s) 182
Tru9I TTAA 1 cut(s) 182
TscAI CASTG 1 cut(s) 925
TseFI GTSAC 1 cut(s) 439
TseI GCWGC 2 cut(s) 509, 518
Tsp45I GTSAC 1 cut(s) 439
TspDTI ATGAA 4 cut(s) 66, 262, 470, 602
TspRI CASTG 1 cut(s) 925
Van91I CCANNNNNTGG 4 cut(s) 166, 201, 343, 802
Vha464I CTTAAG 1 cut(s) 181
VpaK11BI GGWCC 2 cut(s) 10, 608
XapI RAATTY 2 cut(s) 580, 748
XceI RCATGY 1 cut(s) 166
XmiI GTMKAC 1 cut(s) 32
XmnI GAANNNNTTC 1 cut(s) 107
XspI CTAG 1 cut(s) 716
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.