Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0019331.1

Orthogroup ID

OG0000810

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 2858

Gene Structure 2858 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0019331.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

atggcacagattgcaatattgtctgcttcagcaagtcttatacccttcaatagtggtggtgcaaagcaattgagcaagtcattgcagcttttttcttcaagaagatatacaacttctactactactactagttcaccatcattaaccacaataaggtttagaagcaagagaattgggaaccttgaattttgggcaagagcagcagctagtcatggaagtttgggggaggtagatgagtggacattgccagataacaagccgtccgattcaaacccagcaccgccggcgatgaaggggaagagccgcttgttcacgatcgggctcgtgtcggcctggtactcatccaacattggcgttctgctgctgaacaagtacttgcttagcaactatggcttcaagtacccgatcttcctcaccatgtgccacatgacggcgtgttctcttctcagctacatcgcaattgcgtggatgaagatggtgccgatgcagaccattcgatcccgggttcagtttctgaagatcacggcgttgagtctcgtgttctgtgtttctgtggtgtttgggaacatttcgctgcggtatttgccggtgtcgtttaaccaggctataggggccaccacgccgttcttcactgccgttttcgcttactttatgaccctgaaaagggaggcttggctgacttacctgacgctcgttcctgtggttacaggggtcatcattgccagtggg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0032991 GO:0034641 GO:0034645 GO:0042254 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0071840 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L35Ae

Protein Analysis

243

Amino Acids

26.72

Weight (kDa)

10.09

Isoelectric Point (pI)

42.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000810)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11320 AT5G05820
fragaria_vesca	FvH4_3g37700 FvH4_6g12230 FvH4_6g12230 FvH4_7g23830 FvH4_7g23830 FvH4_7g23830 FvH4_7g23830 FvH4_7g23830
malus_domestica	MD01G1145600.v1.1 MD03G1078400.v1.1 MD04G1144900.v1.1 MD07G1212700.v1.1 MD12G1158900.v1.1
prunus_persica	Prupe.2G244900_v2.0.a1 Prupe.2G244900_v2.0.a1 Prupe.2G244900_v2.0.a1 Prupe.6G063400_v2.0.a1 Prupe.6G269300_v2.0.a1 Prupe.6G269300_v2.0.a1
pyrus_communis	pycom01g16510 pycom03g06280 pycom07g19540 pycom12g15080
rosa_chinensis	RchiOBHm_Chr1g0369201 RchiOBHm_Chr3g0464031 RchiOBHm_Chr5g0067971 RchiOBHm_Chr7g0183791
rosa_laevigata	RLG00000024727 RLG00000027147 RLG00000035948
rosa_multiflora	Rmu_co8032292.1_g000001 Rmu_sc0000435.1_g000038 Rmu_sc0001203.1_g000001 Rmu_sc0004616.1_g000004 Rmu_sc0005807.1_g000004 Rmu_sc0019331.1_g000001 Rmu_sc0028685.1_g000001
rosa_roxburghii	Rroxscaffold_1G00012630 Rroxscaffold_1G00013340 Rroxscaffold_4G00287870 Rroxscaffold_4G00291440 Rroxscaffold_5G00365160 Rroxscaffold_6G00416050
rosa_rugosa	Rorug01G0348800 Rorug01G0348800 Rorug01G0348800 Rorug01G0348900 Rorug03G0070200 Rorug04G0183800 Rorug05G0386900
rosa_samantha	Rh1AG355800 Rh1BG319400 Rh1CG333400 Rh1DG350100 Rh3BG131300 Rh3CG133600 Rh3DG132600 Rh5AG445800 Rh5AG536100 Rh5BG463300 Rh5CG485200 Rh5DG477300 Rh7CG459800
rosa_wichuraiana	Rw1G031400 Rw3G010730 Rw5G041630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	478
AciI	CCGC	3 cut(s)	281, 304, 577
AclWI	GGATC	1 cut(s)	492
AcsI	RAATTY	1 cut(s)	185
AcuI	CTGAAG	2 cut(s)	12, 536
AdeI	CACNNNGTG	1 cut(s)	420
AfaI	GTAC	3 cut(s)	338, 374, 401
AfiI	CCNNNNNNNGG	4 cut(s)	153, 430, 663, 664
AgsI	TTSAA	5 cut(s)	49, 99, 185, 270, 397
AhlI	ACTAGT	1 cut(s)	128
AjnI	CCWGG	2 cut(s)	332, 600
AluBI	AGCT	3 cut(s)	88, 206, 450
AluI	AGCT	3 cut(s)	88, 206, 450
Alw26I	GTCTC	1 cut(s)	539
AlwI	GGATC	1 cut(s)	492
AlwNI	CAGNNNCTG	1 cut(s)	514
Ama87I	CYCGRG	1 cut(s)	501
AoxI	GGCC	2 cut(s)	330, 612
ApeKI	GCWGC	5 cut(s)	85, 200, 203, 361, 574
ApoI	RAATTY	1 cut(s)	185
AspS9I	GGNCC	1 cut(s)	612
AsuC2I	CCSGG	2 cut(s)	502, 503
AsuHPI	GGTGA	2 cut(s)	126, 406
AvaI	CYCGRG	1 cut(s)	501
BanI	GGYRCC	1 cut(s)	478
BanII	GRGCYC	1 cut(s)	324
BarI	GAAGNNNNNNTAC	2 cut(s)	392, 424
BauI	CACGAG	2 cut(s)	323, 536
BbvI	GCAGC	5 cut(s)	97, 212, 215, 348, 561
BccI	CCATC	2 cut(s)	145, 469
BceAI	ACGGC	5 cut(s)	244, 447, 540, 607, 620
BcgI	CGANNNNNNTGC	2 cut(s)	476, 510
BciT130I	CCWGG	2 cut(s)	334, 602
BcnI	CCSGG	2 cut(s)	502, 503
BcoDI	GTCTC	1 cut(s)	539
BcuI	ACTAGT	1 cut(s)	128
BfaI	CTAG	2 cut(s)	129, 207
BfmI	CTRYAG	1 cut(s)	606
BisI	GCNGC	6 cut(s)	86, 201, 204, 304, 362, 575
BlpI	GCTNAGC	1 cut(s)	380
BlsI	GCNGC	6 cut(s)	87, 202, 205, 305, 363, 576
BmcAI	AGTACT	1 cut(s)	374
Bme1390I	CCNGG	4 cut(s)	334, 502, 503, 602
BmeT110I	CYCGRG	1 cut(s)	501
BmgT120I	GGNCC	1 cut(s)	612
BmiI	GGNNCC	3 cut(s)	179, 480, 613
BmrFI	CCNGG	4 cut(s)	334, 502, 503, 602
BmsI	GCATC	1 cut(s)	474
Bpu1102I	GCTNAGC	1 cut(s)	380
BpuMI	CCSGG	2 cut(s)	502, 503
BsaJI	CCNNGG	1 cut(s)	501
Bsc4I	CCNNNNNNNGG	4 cut(s)	153, 430, 663, 664
Bse118I	RCCGGY	2 cut(s)	283, 586
Bse1I	ACTGG	1 cut(s)	723
Bse3DI	GCAATG	3 cut(s)	80, 242, 717
BseBI	CCWGG	2 cut(s)	334, 602
BseDI	CCNNGG	1 cut(s)	501
BseGI	GGATG	2 cut(s)	341, 474
BseLI	CCNNNNNNNGG	4 cut(s)	153, 430, 663, 664
BseMI	GCAATG	3 cut(s)	80, 242, 717
BseMII	CTCAG	1 cut(s)	460
BseNI	ACTGG	1 cut(s)	723
BseXI	GCAGC	5 cut(s)	97, 212, 215, 348, 561
BseYI	CCCAGC	1 cut(s)	274
Bsh1285I	CGRYCG	1 cut(s)	318
BshFI	GGCC	2 cut(s)	332, 614
BshNI	GGYRCC	1 cut(s)	478
BsiEI	CGRYCG	1 cut(s)	318
BsiHKCI	CYCGRG	1 cut(s)	501
BsiSI	CCGG	3 cut(s)	284, 502, 587
BslI	CCNNNNNNNGG	4 cut(s)	153, 430, 663, 664
BsmAI	GTCTC	1 cut(s)	539
BsnI	GGCC	2 cut(s)	332, 614
BsoBI	CYCGRG	1 cut(s)	501
Bsp1286I	GDGCHC	1 cut(s)	324
Bsp143I	GATC	4 cut(s)	315, 405, 497, 519
Bsp1720I	GCTNAGC	1 cut(s)	380
BspACI	CCGC	3 cut(s)	281, 304, 577
BspANI	GGCC	2 cut(s)	332, 614
BspCNI	CTCAG	1 cut(s)	459
BspLI	GGNNCC	3 cut(s)	179, 480, 613
BspPI	GGATC	1 cut(s)	492
BspQI	GCTCTTC	1 cut(s)	293
BspT107I	GGYRCC	1 cut(s)	478
BsrDI	GCAATG	3 cut(s)	80, 242, 717
BsrFI	RCCGGY	2 cut(s)	283, 586
BsrI	ACTGG	1 cut(s)	723
BssAI	RCCGGY	2 cut(s)	283, 586
BssECI	CCNNGG	1 cut(s)	501
BssMI	GATC	4 cut(s)	315, 405, 497, 519
BssSI	CACGAG	2 cut(s)	323, 536
Bst2BI	CACGAG	2 cut(s)	323, 536
Bst2UI	CCWGG	2 cut(s)	334, 602
Bst6I	CTCTTC	2 cut(s)	293, 447
BstAPI	GCANNNNNTGC	1 cut(s)	11
BstC8I	GCNNGC	1 cut(s)	285
BstDEI	CTNAG	2 cut(s)	380, 446
BstF5I	GGATG	2 cut(s)	341, 474
BstKTI	GATC	4 cut(s)	318, 408, 500, 522
BstMAI	GTCTC	1 cut(s)	539
BstMBI	GATC	4 cut(s)	315, 405, 497, 519
BstMCI	CGRYCG	1 cut(s)	318
BstMWI	GCNNNNNNNGC	7 cut(s)	11, 200, 284, 390, 583, 611, 641
BstNI	CCWGG	2 cut(s)	334, 602
BstSCI	CCNGG	4 cut(s)	332, 500, 501, 600
BstSFI	CTRYAG	1 cut(s)	606
BstV1I	GCAGC	5 cut(s)	97, 212, 215, 348, 561
BsuRI	GGCC	2 cut(s)	332, 614
BtgZI	GCGATG	2 cut(s)	302, 439
BtsCI	GGATG	2 cut(s)	341, 474
BtsI	GCAGTG	1 cut(s)	630
BtsIMutI	CAGTG	1 cut(s)	630
Cac8I	GCNNGC	1 cut(s)	285
CaiI	CAGNNNCTG	1 cut(s)	514
Cfr10I	RCCGGY	2 cut(s)	283, 586
Cfr13I	GGNCC	1 cut(s)	612
Cfr9I	CCCGGG	1 cut(s)	501
CseI	GACGC	1 cut(s)	697
Csp6I	GTAC	3 cut(s)	337, 373, 400
CspCI	CAANNNNNGTGG	2 cut(s)	37, 72
CviAII	CATG	3 cut(s)	212, 418, 427
CviQI	GTAC	3 cut(s)	337, 373, 400
DdeI	CTNAG	2 cut(s)	380, 446
DpnI	GATC	4 cut(s)	317, 407, 499, 521
DpnII	GATC	4 cut(s)	315, 405, 497, 519
DraIII	CACNNNGTG	1 cut(s)	420
Eam1104I	CTCTTC	2 cut(s)	293, 447
EarI	CTCTTC	2 cut(s)	293, 447
Eco24I	GRGCYC	1 cut(s)	324
Eco57I	CTGAAG	2 cut(s)	12, 536
Eco88I	CYCGRG	1 cut(s)	501
EcoRII	CCWGG	2 cut(s)	332, 600
EcoT38I	GRGCYC	1 cut(s)	324
FaeI	CATG	3 cut(s)	215, 421, 430
FaiI	YATR	8 cut(s)	41, 108, 213, 390, 419, 428, 608, 653
FalI	AAGNNNNNCTT	4 cut(s)	290, 322, 655, 687
FatI	CATG	3 cut(s)	211, 417, 426
Fnu4HI	GCNGC	6 cut(s)	86, 201, 204, 304, 362, 575
FokI	GGATG	2 cut(s)	328, 481
FriOI	GRGCYC	1 cut(s)	324
Fsp4HI	GCNGC	6 cut(s)	86, 201, 204, 304, 362, 575
FspBI	CTAG	2 cut(s)	129, 207
GluI	GCNGC	6 cut(s)	86, 201, 204, 304, 362, 575
GsaI	CCCAGC	1 cut(s)	278
HaeIII	GGCC	2 cut(s)	332, 614
HapII	CCGG	3 cut(s)	284, 502, 587
HgaI	GACGC	1 cut(s)	697
Hin1II	CATG	3 cut(s)	215, 421, 430
HinfI	GANTC	2 cut(s)	266, 532
HpaII	CCGG	3 cut(s)	284, 502, 587
HphI	GGTGA	2 cut(s)	126, 406
Hpy166II	GTNNAC	3 cut(s)	134, 240, 312
Hpy188I	TCNGA	2 cut(s)	265, 516
Hpy188III	TCNNGA	2 cut(s)	99, 313
Hpy8I	GTNNAC	3 cut(s)	134, 240, 312
HpyAV	CCTTC	2 cut(s)	55, 286
HpyCH4V	TGCA	4 cut(s)	14, 62, 85, 487
HpyF10VI	GCNNNNNNNGC	7 cut(s)	11, 200, 284, 390, 583, 611, 641
HpyF3I	CTNAG	2 cut(s)	380, 446
Hsp92II	CATG	3 cut(s)	215, 421, 430
KroI	GCCGGC	1 cut(s)	283
KroNI	GCCGGC	1 cut(s)	285
Kzo9I	GATC	4 cut(s)	315, 405, 497, 519
LguI	GCTCTTC	1 cut(s)	293
Lsp1109I	GCAGC	5 cut(s)	97, 212, 215, 348, 561
LweI	GCATC	1 cut(s)	474
MaeI	CTAG	2 cut(s)	129, 207
MaeIII	GTNAC	1 cut(s)	703
MalI	GATC	4 cut(s)	317, 407, 499, 521
MboI	GATC	4 cut(s)	315, 405, 497, 519
MboII	GAAGA	8 cut(s)	87, 114, 310, 400, 434, 484, 529, 619
MfeI	CAATTG	2 cut(s)	68, 459
MhlI	GDGCHC	1 cut(s)	324
MluCI	AATT	4 cut(s)	68, 171, 185, 459
MlyI	GAGTC	1 cut(s)	541
MmeI	TCCRAC	1 cut(s)	369
MnlI	CCTC	3 cut(s)	220, 422, 661
MreI	CGCCGGCG	1 cut(s)	283
MroNI	GCCGGC	1 cut(s)	283
MseI	TTAA	2 cut(s)	143, 597
MspI	CCGG	3 cut(s)	284, 502, 587
MspR9I	CCNGG	4 cut(s)	334, 502, 503, 602
MunI	CAATTG	2 cut(s)	68, 459
MvaI	CCWGG	2 cut(s)	334, 602
MwoI	GCNNNNNNNGC	7 cut(s)	11, 200, 284, 390, 583, 611, 641
NaeI	GCCGGC	1 cut(s)	285
NciI	CCSGG	2 cut(s)	502, 503
NdeII	GATC	4 cut(s)	315, 405, 497, 519
NgoMIV	GCCGGC	1 cut(s)	283
NlaIII	CATG	3 cut(s)	215, 421, 430
NlaIV	GGNNCC	3 cut(s)	179, 480, 613
PciSI	GCTCTTC	1 cut(s)	293
PdiI	GCCGGC	1 cut(s)	285
PfeI	GAWTC	1 cut(s)	266
PkrI	GCNGC	6 cut(s)	87, 202, 205, 305, 363, 576
Ple19I	CGATCG	1 cut(s)	318
PleI	GAGTC	1 cut(s)	540
PpsI	GAGTC	1 cut(s)	540
Psp6I	CCWGG	2 cut(s)	332, 600
PspFI	CCCAGC	1 cut(s)	274
PspGI	CCWGG	2 cut(s)	332, 600
PspN4I	GGNNCC	3 cut(s)	179, 480, 613
PspPI	GGNCC	1 cut(s)	612
PstNI	CAGNNNCTG	1 cut(s)	514
PvuI	CGATCG	1 cut(s)	318
RsaI	GTAC	3 cut(s)	338, 374, 401
RsaNI	GTAC	3 cut(s)	337, 373, 400
SapI	GCTCTTC	1 cut(s)	293
SaqAI	TTAA	2 cut(s)	143, 597
SatI	GCNGC	6 cut(s)	86, 201, 204, 304, 362, 575
Sau3AI	GATC	4 cut(s)	315, 405, 497, 519
Sau96I	GGNCC	1 cut(s)	612
ScaI	AGTACT	1 cut(s)	374
SchI	GAGTC	1 cut(s)	541
ScrFI	CCNGG	4 cut(s)	334, 502, 503, 602
SduI	GDGCHC	1 cut(s)	324
SetI	ASST	7 cut(s)	90, 158, 183, 208, 231, 452, 687
SfaNI	GCATC	1 cut(s)	474
SfcI	CTRYAG	1 cut(s)	606
SgrAI	CRCCGGYG	1 cut(s)	283
SmaI	CCCGGG	1 cut(s)	503
SpeI	ACTAGT	1 cut(s)	128
Sse9I	AATT	4 cut(s)	68, 171, 185, 459
SsiI	CCGC	3 cut(s)	281, 304, 577
SspI	AATATT	1 cut(s)	18
SspMI	CTAG	2 cut(s)	129, 207
StyD4I	CCNGG	4 cut(s)	332, 500, 501, 600
TaqI	TCGA	1 cut(s)	496
TasI	AATT	4 cut(s)	68, 171, 185, 459
TatI	WGTACW	1 cut(s)	372
TauI	GCSGC	1 cut(s)	306
TfiI	GAWTC	1 cut(s)	266
Tru1I	TTAA	2 cut(s)	143, 597
Tru9I	TTAA	2 cut(s)	143, 597
TscAI	CASTG	1 cut(s)	637
TseI	GCWGC	5 cut(s)	85, 200, 203, 361, 574
TspDTI	ATGAA	2 cut(s)	305, 485
TspMI	CCCGGG	1 cut(s)	501
TspRI	CASTG	1 cut(s)	637
XapI	RAATTY	1 cut(s)	185
XmaI	CCCGGG	1 cut(s)	501
XspI	CTAG	2 cut(s)	129, 207
ZrmI	AGTACT	1 cut(s)	374

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.