Rroxscaffold_4G00291440

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000810
Physical Location & Seq
Reverse (-)
11885077 .. 11885458
382 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00291440.1

Sequence Viewer

Length: 162 bp
ATGGTTTTGGATTGGAGGTTGGGAATGCTTGGCTTGTTGCTTGAGGCTTGCTTGAAAGGTATGTTGTTTAGAGAATGTATTCTCTGTGGCTTGGAGCTTGTGGGTTGTATTCCCTGGAGGTTTTATGATACCGTTGCAGCAACTAGAAGCCTTAATTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

53

Amino Acids

6.02

Weight (kDa)

6.03

Isoelectric Point (pI)

43.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 1 cut(s) 55
AjnI CCWGG 1 cut(s) 113
AluBI AGCT 1 cut(s) 97
AluI AGCT 1 cut(s) 97
ApeKI GCWGC 1 cut(s) 137
Asp700I GAANNNNTTC 1 cut(s) 78
BbvI GCAGC 1 cut(s) 149
BciT130I CCWGG 1 cut(s) 115
BfaI CTAG 1 cut(s) 144
BisI GCNGC 1 cut(s) 138
BlsI GCNGC 1 cut(s) 139
Bme1390I CCNGG 1 cut(s) 115
BmrFI CCNGG 1 cut(s) 115
BpmI CTGGAG 1 cut(s) 136
BpuEI CTTGAG 1 cut(s) 62
BsaJI CCNNGG 1 cut(s) 113
BseBI CCWGG 1 cut(s) 115
BseDI CCNNGG 1 cut(s) 113
BseXI GCAGC 1 cut(s) 149
BsmI GAATGC 1 cut(s) 30
BssECI CCNNGG 1 cut(s) 113
Bst2UI CCWGG 1 cut(s) 115
Bst4CI ACNGT 1 cut(s) 133
BstC8I GCNNGC 1 cut(s) 49
BstNI CCWGG 1 cut(s) 115
BstSCI CCNGG 1 cut(s) 113
BstV1I GCAGC 1 cut(s) 149
Cac8I GCNNGC 1 cut(s) 49
CviJI RGCY 5 cut(s) 33, 47, 90, 97, 150
CviKI_1 RGCY 5 cut(s) 33, 47, 90, 97, 150
EcoRII CCWGG 1 cut(s) 113
FaiI YATR 3 cut(s) 62, 126, 160
Fnu4HI GCNGC 1 cut(s) 138
Fsp4HI GCNGC 1 cut(s) 138
FspBI CTAG 1 cut(s) 144
GluI GCNGC 1 cut(s) 138
GsuI CTGGAG 1 cut(s) 136
HpyCH4III ACNGT 1 cut(s) 133
HpyCH4V TGCA 1 cut(s) 137
LmnI GCTCC 1 cut(s) 94
LpnPI CCDG 2 cut(s) 100, 127
Lsp1109I GCAGC 1 cut(s) 149
MaeI CTAG 1 cut(s) 144
MluCI AATT 1 cut(s) 154
MnlI CCTC 3 cut(s) 9, 37, 111
MroXI GAANNNNTTC 1 cut(s) 78
MseI TTAA 1 cut(s) 153
MspR9I CCNGG 1 cut(s) 115
Mva1269I GAATGC 1 cut(s) 30
MvaI CCWGG 1 cut(s) 115
PctI GAATGC 1 cut(s) 30
PdmI GAANNNNTTC 1 cut(s) 78
PkrI GCNGC 1 cut(s) 139
Psp6I CCWGG 1 cut(s) 113
PspGI CCWGG 1 cut(s) 113
SaqAI TTAA 1 cut(s) 153
SatI GCNGC 1 cut(s) 138
ScrFI CCNGG 1 cut(s) 115
SetI ASST 4 cut(s) 20, 61, 99, 122
SmlI CTYRAG 1 cut(s) 41
SmoI CTYRAG 1 cut(s) 41
Sse9I AATT 1 cut(s) 154
SspMI CTAG 1 cut(s) 144
StyD4I CCNGG 1 cut(s) 113
TaaI ACNGT 1 cut(s) 133
TasI AATT 1 cut(s) 154
Tru1I TTAA 1 cut(s) 153
Tru9I TTAA 1 cut(s) 153
TseI GCWGC 1 cut(s) 137
XmnI GAANNNNTTC 1 cut(s) 78
XspI CTAG 1 cut(s) 144
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.