Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000435.1

Orthogroup ID

OG0000810

Physical Location & Seq

Genomic Coordinates Reverse (-)

170126 .. 170602

Gene Structure 477 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000435.1_g000038.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

atgtcgtcggacccgaaaccagcaacaatgtcgacgagccgggtcttcaccgtggggctgataacggcatggtactcatccaatataggagttctgctattgaacaagttcctcctaaccaattacgggttcaagtacccgatcttcctgaccctctgccacatgctggcttgctctttcttaagctacgttgccatttcatggctcaaggtggttcccatgcagagcatcaggtcaagggttcagttcgtcaagatatcgtcgctcggtttcatcttctgtttgtcggtcgtcggcgggaacatctcgctccggtatctggcggtgtcgttcaaccaggcggtgggcgccacgacaccgtttttcacggcggtttttgcgtacttgatgactctgaagaaggagggctggctcacgtaccttactcttgtacctgtcgtcaccggcgttattattgccagcggggtaagaacgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

158

Amino Acids

17.4

Weight (kDa)

9.91

Isoelectric Point (pI)

39.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000810)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11320 AT5G05820
fragaria_vesca	FvH4_3g37700 FvH4_6g12230 FvH4_6g12230 FvH4_7g23830 FvH4_7g23830 FvH4_7g23830 FvH4_7g23830 FvH4_7g23830
malus_domestica	MD01G1145600.v1.1 MD03G1078400.v1.1 MD04G1144900.v1.1 MD07G1212700.v1.1 MD12G1158900.v1.1
prunus_persica	Prupe.2G244900_v2.0.a1 Prupe.2G244900_v2.0.a1 Prupe.2G244900_v2.0.a1 Prupe.6G063400_v2.0.a1 Prupe.6G269300_v2.0.a1 Prupe.6G269300_v2.0.a1
pyrus_communis	pycom01g16510 pycom03g06280 pycom07g19540 pycom12g15080
rosa_chinensis	RchiOBHm_Chr1g0369201 RchiOBHm_Chr3g0464031 RchiOBHm_Chr5g0067971 RchiOBHm_Chr7g0183791
rosa_laevigata	RLG00000024727 RLG00000027147 RLG00000035948
rosa_multiflora	Rmu_co8032292.1_g000001 Rmu_sc0000435.1_g000038 Rmu_sc0001203.1_g000001 Rmu_sc0004616.1_g000004 Rmu_sc0005807.1_g000004 Rmu_sc0019331.1_g000001 Rmu_sc0028685.1_g000001
rosa_roxburghii	Rroxscaffold_1G00012630 Rroxscaffold_1G00013340 Rroxscaffold_4G00287870 Rroxscaffold_4G00291440 Rroxscaffold_5G00365160 Rroxscaffold_6G00416050
rosa_rugosa	Rorug01G0348800 Rorug01G0348800 Rorug01G0348800 Rorug01G0348900 Rorug03G0070200 Rorug04G0183800 Rorug05G0386900
rosa_samantha	Rh1AG355800 Rh1BG319400 Rh1CG333400 Rh1DG350100 Rh3BG131300 Rh3CG133600 Rh3DG132600 Rh5AG445800 Rh5AG536100 Rh5BG463300 Rh5CG485200 Rh5DG477300 Rh7CG459800
rosa_wichuraiana	Rw1G031400 Rw3G010730 Rw5G041630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	347
AccB7I	CCANNNNNTGG	3 cut(s)	166, 201, 343
AccI	GTMKAC	1 cut(s)	32
AciI	CCGC	5 cut(s)	297, 323, 341, 371, 462
AcuI	CTGAAG	1 cut(s)	416
AcyI	GRCGYC	1 cut(s)	348
AfaI	GTAC	5 cut(s)	74, 137, 383, 419, 432
AfiI	CCNNNNNNNGG	5 cut(s)	126, 166, 201, 319, 343
AflII	CTTAAG	1 cut(s)	181
AgsI	TTSAA	3 cut(s)	103, 133, 334
AjnI	CCWGG	1 cut(s)	336
AjuI	GAANNNNNNNTTGG	2 cut(s)	113, 145
AluBI	AGCT	1 cut(s)	186
AluI	AGCT	1 cut(s)	186
Asp700I	GAANNNNTTC	1 cut(s)	107
AspLEI	GCGC	1 cut(s)	350
AspS9I	GGNCC	1 cut(s)	10
AsuC2I	CCSGG	1 cut(s)	41
AsuHPI	GGTGA	2 cut(s)	40, 433
AvaII	GGWCC	1 cut(s)	10
BaeI	ACNNNNGTAYC	2 cut(s)	414, 447
BanI	GGYRCC	1 cut(s)	347
BarI	GAAGNNNNNNTAC	2 cut(s)	128, 160
BbsI	GAAGAC	1 cut(s)	37
BceAI	ACGGC	2 cut(s)	81, 384
BcgI	CGANNNNNNTGC	2 cut(s)	12, 46
BciT130I	CCWGG	1 cut(s)	338
BcnI	CCSGG	1 cut(s)	41
BfoI	RGCGCY	1 cut(s)	351
BfrI	CTTAAG	1 cut(s)	181
Bme1390I	CCNGG	2 cut(s)	41, 338
Bme18I	GGWCC	1 cut(s)	10
BmgT120I	GGNCC	1 cut(s)	10
BmiI	GGNNCC	3 cut(s)	12, 216, 349
BmrFI	CCNGG	2 cut(s)	41, 338
BmsI	GCATC	1 cut(s)	237
BpiI	GAAGAC	1 cut(s)	37
BpuEI	CTTGAG	1 cut(s)	191
BpuMI	CCSGG	1 cut(s)	41
BsaAI	YACGTR	1 cut(s)	417
BsaHI	GRCGYC	1 cut(s)	348
BsaJI	CCNNGG	1 cut(s)	51
BsaWI	WCCGGW	1 cut(s)	312
Bsc4I	CCNNNNNNNGG	5 cut(s)	126, 166, 201, 319, 343
Bse118I	RCCGGY	1 cut(s)	443
BseBI	CCWGG	1 cut(s)	338
BseDI	CCNNGG	1 cut(s)	51
BseGI	GGATG	1 cut(s)	77
BseLI	CCNNNNNNNGG	5 cut(s)	126, 166, 201, 319, 343
Bsh1285I	CGRYCG	1 cut(s)	291
BshNI	GGYRCC	1 cut(s)	347
BsiEI	CGRYCG	1 cut(s)	291
BsiSI	CCGG	3 cut(s)	40, 313, 444
BslI	CCNNNNNNNGG	5 cut(s)	126, 166, 201, 319, 343
Bsp143I	GATC	1 cut(s)	141
BspACI	CCGC	5 cut(s)	297, 323, 341, 371, 462
BspLI	GGNNCC	3 cut(s)	12, 216, 349
BspT107I	GGYRCC	1 cut(s)	347
BspTI	CTTAAG	1 cut(s)	181
BsrFI	RCCGGY	1 cut(s)	443
BssAI	RCCGGY	1 cut(s)	443
BssECI	CCNNGG	1 cut(s)	51
BssMI	GATC	1 cut(s)	141
BssNI	GRCGYC	1 cut(s)	348
Bst2UI	CCWGG	1 cut(s)	338
Bst4CI	ACNGT	2 cut(s)	52, 360
BstACI	GRCGYC	1 cut(s)	348
BstAFI	CTTAAG	1 cut(s)	181
BstBAI	YACGTR	1 cut(s)	417
BstC8I	GCNNGC	4 cut(s)	168, 172, 410, 460
BstDSI	CCRYGG	1 cut(s)	51
BstF5I	GGATG	1 cut(s)	77
BstH2I	RGCGCY	1 cut(s)	351
BstHHI	GCGC	1 cut(s)	350
BstKTI	GATC	1 cut(s)	144
BstMBI	GATC	1 cut(s)	141
BstMCI	CGRYCG	1 cut(s)	291
BstMWI	GCNNNNNNNGC	2 cut(s)	347, 377
BstNI	CCWGG	1 cut(s)	338
BstNSI	RCATGY	1 cut(s)	166
BstSCI	CCNGG	2 cut(s)	39, 336
BstV2I	GAAGAC	1 cut(s)	37
BtgI	CCRYGG	1 cut(s)	51
BtsCI	GGATG	1 cut(s)	77
Cac8I	GCNNGC	4 cut(s)	168, 172, 410, 460
CfoI	GCGC	1 cut(s)	350
Cfr10I	RCCGGY	1 cut(s)	443
Cfr13I	GGNCC	1 cut(s)	10
Csp6I	GTAC	5 cut(s)	73, 136, 382, 418, 431
CviAII	CATG	4 cut(s)	69, 163, 201, 220
CviJI	RGCY	7 cut(s)	39, 58, 170, 186, 205, 408, 412
CviKI_1	RGCY	7 cut(s)	39, 58, 170, 186, 205, 408, 412
CviQI	GTAC	5 cut(s)	73, 136, 382, 418, 431
DinI	GGCGCC	1 cut(s)	349
DpnI	GATC	1 cut(s)	143
DpnII	GATC	1 cut(s)	141
Eco32I	GATATC	1 cut(s)	258
Eco47I	GGWCC	1 cut(s)	10
Eco57I	CTGAAG	1 cut(s)	416
EcoRII	CCWGG	1 cut(s)	336
EcoRV	GATATC	1 cut(s)	258
EgeI	GGCGCC	1 cut(s)	349
EheI	GGCGCC	1 cut(s)	349
FaeI	CATG	4 cut(s)	72, 166, 204, 223
FaiI	YATR	5 cut(s)	70, 86, 164, 202, 221
FatI	CATG	4 cut(s)	68, 162, 200, 219
FauI	CCCGC	2 cut(s)	290, 455
FblI	GTMKAC	1 cut(s)	32
FokI	GGATG	1 cut(s)	64
GlaI	GCGC	1 cut(s)	349
HaeII	RGCGCY	1 cut(s)	351
HapII	CCGG	3 cut(s)	40, 313, 444
HhaI	GCGC	1 cut(s)	350
Hin1I	GRCGYC	1 cut(s)	348
Hin1II	CATG	4 cut(s)	72, 166, 204, 223
Hin6I	GCGC	1 cut(s)	348
HinP1I	GCGC	1 cut(s)	348
HincII	GTYRAC	1 cut(s)	33
HindII	GTYRAC	1 cut(s)	33
HinfI	GANTC	1 cut(s)	391
HpaII	CCGG	3 cut(s)	40, 313, 444
HphI	GGTGA	2 cut(s)	40, 433
Hpy166II	GTNNAC	1 cut(s)	33
Hpy188I	TCNGA	2 cut(s)	10, 396
Hpy188III	TCNNGA	2 cut(s)	148, 253
Hpy8I	GTNNAC	1 cut(s)	33
Hpy99I	CGWCG	4 cut(s)	10, 37, 265, 296
HpyAV	CCTTC	1 cut(s)	394
HpyCH4III	ACNGT	2 cut(s)	52, 360
HpyCH4IV	ACGT	3 cut(s)	189, 416, 473
HpyCH4V	TGCA	1 cut(s)	223
HpyF10VI	GCNNNNNNNGC	2 cut(s)	347, 377
HpySE526I	ACGT	3 cut(s)	189, 416, 473
Hsp92I	GRCGYC	1 cut(s)	348
Hsp92II	CATG	4 cut(s)	72, 166, 204, 223
HspAI	GCGC	1 cut(s)	348
KasI	GGCGCC	1 cut(s)	347
Kzo9I	GATC	1 cut(s)	141
LmnI	GCTCC	1 cut(s)	315
LweI	GCATC	1 cut(s)	237
MaeII	ACGT	3 cut(s)	189, 416, 473
MaeIII	GTNAC	1 cut(s)	439
MalI	GATC	1 cut(s)	143
MboI	GATC	1 cut(s)	141
MboII	GAAGA	4 cut(s)	37, 136, 268, 409
MluCI	AATT	1 cut(s)	121
Mly113I	GGCGCC	1 cut(s)	348
MlyI	GAGTC	1 cut(s)	385
MnlI	CCTC	3 cut(s)	122, 164, 397
MroXI	GAANNNNTTC	1 cut(s)	107
MseI	TTAA	1 cut(s)	182
MspA1I	CMGCKG	1 cut(s)	462
MspCI	CTTAAG	1 cut(s)	181
MspI	CCGG	3 cut(s)	40, 313, 444
MspR9I	CCNGG	2 cut(s)	41, 338
MvaI	CCWGG	1 cut(s)	338
MwoI	GCNNNNNNNGC	2 cut(s)	347, 377
NarI	GGCGCC	1 cut(s)	348
NciI	CCSGG	1 cut(s)	41
NdeII	GATC	1 cut(s)	141
NlaIII	CATG	4 cut(s)	72, 166, 204, 223
NlaIV	GGNNCC	3 cut(s)	12, 216, 349
NmuCI	GTSAC	1 cut(s)	439
NspI	RCATGY	1 cut(s)	166
PcsI	WCGNNNNNNNCGW	2 cut(s)	11, 444
PdmI	GAANNNNTTC	1 cut(s)	107
PflMI	CCANNNNNTGG	3 cut(s)	166, 201, 343
PleI	GAGTC	1 cut(s)	385
PluTI	GGCGCC	1 cut(s)	351
PpsI	GAGTC	1 cut(s)	385
Ppu21I	YACGTR	1 cut(s)	417
Psp6I	CCWGG	1 cut(s)	336
PspGI	CCWGG	1 cut(s)	336
PspN4I	GGNNCC	3 cut(s)	12, 216, 349
PspPI	GGNCC	1 cut(s)	10
RsaI	GTAC	5 cut(s)	74, 137, 383, 419, 432
RsaNI	GTAC	5 cut(s)	73, 136, 382, 418, 431
SalI	GTCGAC	1 cut(s)	31
SaqAI	TTAA	1 cut(s)	182
Sau3AI	GATC	1 cut(s)	141
Sau96I	GGNCC	1 cut(s)	10
SchI	GAGTC	1 cut(s)	385
ScrFI	CCNGG	2 cut(s)	41, 338
SetI	ASST	8 cut(s)	188, 192, 213, 236, 419, 423, 436, 476
SfaNI	GCATC	1 cut(s)	237
SfoI	GGCGCC	1 cut(s)	349
SgrAI	CRCCGGYG	1 cut(s)	443
SinI	GGWCC	1 cut(s)	10
SmlI	CTYRAG	2 cut(s)	181, 206
SmoI	CTYRAG	2 cut(s)	181, 206
Sse9I	AATT	1 cut(s)	121
SsiI	CCGC	5 cut(s)	297, 323, 341, 371, 462
SspDI	GGCGCC	1 cut(s)	347
StyD4I	CCNGG	2 cut(s)	39, 336
TaaI	ACNGT	2 cut(s)	52, 360
TaiI	ACGT	3 cut(s)	192, 419, 476
TaqI	TCGA	1 cut(s)	32
TaqII	GACCGA	1 cut(s)	277
TasI	AATT	1 cut(s)	121
Tru1I	TTAA	1 cut(s)	182
Tru9I	TTAA	1 cut(s)	182
TseFI	GTSAC	1 cut(s)	439
Tsp45I	GTSAC	1 cut(s)	439
TspDTI	ATGAA	2 cut(s)	189, 262
Van91I	CCANNNNNTGG	3 cut(s)	166, 201, 343
Vha464I	CTTAAG	1 cut(s)	181
VpaK11BI	GGWCC	1 cut(s)	10
XceI	RCATGY	1 cut(s)	166
XmiI	GTMKAC	1 cut(s)	32
XmnI	GAANNNNTTC	1 cut(s)	107

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.