Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0000810

Physical Location & Seq

Genomic Coordinates Reverse (-)

92122732 .. 92123672

Gene Structure 941 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG536100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 195 bp

ATGGTCTCCTTCAAGGAAATTCAACTCACCAGTGAAGTCCTAATACGAACTATGAAGTTGGAGGTGCGGCGTCTCCAAGCTTCAACAGGTGAGTCGAGTTTTCACTTCTTTGGATTTGTTATGTGCATTAGTGCAACTACTGCAAGGGCATTTAAATCTGTTCTTCAGGGTATCCTACTTTCTTCTAACGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006810 GO:0007275 GO:0008150 GO:0008152 GO:0009791 GO:0009987 GO:0010154 GO:0010191 GO:0010214 GO:0012505 GO:0015780 GO:0015931 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048359 GO:0048608 GO:0048731 GO:0048856 GO:0051179 GO:0051234 GO:0055085 GO:0061458 GO:0071702 GO:0071705 GO:1901264

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

64

Amino Acids

7.1

Weight (kDa)

9.78

Isoelectric Point (pI)

33.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000810)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11320 AT5G05820
fragaria_vesca	FvH4_3g37700 FvH4_6g12230 FvH4_6g12230 FvH4_7g23830 FvH4_7g23830 FvH4_7g23830 FvH4_7g23830 FvH4_7g23830
malus_domestica	MD01G1145600.v1.1 MD03G1078400.v1.1 MD04G1144900.v1.1 MD07G1212700.v1.1 MD12G1158900.v1.1
prunus_persica	Prupe.2G244900_v2.0.a1 Prupe.2G244900_v2.0.a1 Prupe.2G244900_v2.0.a1 Prupe.6G063400_v2.0.a1 Prupe.6G269300_v2.0.a1 Prupe.6G269300_v2.0.a1
pyrus_communis	pycom01g16510 pycom03g06280 pycom07g19540 pycom12g15080
rosa_chinensis	RchiOBHm_Chr1g0369201 RchiOBHm_Chr3g0464031 RchiOBHm_Chr5g0067971 RchiOBHm_Chr7g0183791
rosa_laevigata	RLG00000024727 RLG00000027147 RLG00000035948
rosa_multiflora	Rmu_co8032292.1_g000001 Rmu_sc0000435.1_g000038 Rmu_sc0001203.1_g000001 Rmu_sc0004616.1_g000004 Rmu_sc0005807.1_g000004 Rmu_sc0019331.1_g000001 Rmu_sc0028685.1_g000001
rosa_roxburghii	Rroxscaffold_1G00012630 Rroxscaffold_1G00013340 Rroxscaffold_4G00287870 Rroxscaffold_4G00291440 Rroxscaffold_5G00365160 Rroxscaffold_6G00416050
rosa_rugosa	Rorug01G0348800 Rorug01G0348800 Rorug01G0348800 Rorug01G0348900 Rorug03G0070200 Rorug04G0183800 Rorug05G0386900
rosa_samantha	Rh1AG355800 Rh1BG319400 Rh1CG333400 Rh1DG350100 Rh3BG131300 Rh3CG133600 Rh3DG132600 Rh5AG445800 Rh5AG536100 Rh5BG463300 Rh5CG485200 Rh5DG477300 Rh7CG459800
rosa_wichuraiana	Rw1G031400 Rw3G010730 Rw5G041630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	67
AcsI	RAATTY	1 cut(s)	18
AcuI	CTGAAG	1 cut(s)	149
AcyI	GRCGYC	1 cut(s)	70
AgsI	TTSAA	3 cut(s)	13, 23, 84
AluBI	AGCT	1 cut(s)	80
AluI	AGCT	1 cut(s)	80
Alw26I	GTCTC	2 cut(s)	10, 77
ApoI	RAATTY	1 cut(s)	18
AsuHPI	GGTGA	2 cut(s)	19, 101
BarI	GAAGNNNNNNTAC	2 cut(s)	27, 59
BciVI	GTATCC	1 cut(s)	182
BcoDI	GTCTC	2 cut(s)	10, 77
BfuI	GTATCC	1 cut(s)	182
BisI	GCNGC	1 cut(s)	68
BlsI	GCNGC	1 cut(s)	69
BsaHI	GRCGYC	1 cut(s)	70
BsaI	GGTCTC	1 cut(s)	10
Bse1I	ACTGG	1 cut(s)	30
BseNI	ACTGG	1 cut(s)	30
BsmAI	GTCTC	2 cut(s)	10, 77
BsmBI	CGTCTC	1 cut(s)	77
Bso31I	GGTCTC	1 cut(s)	10
BspACI	CCGC	1 cut(s)	67
BspTNI	GGTCTC	1 cut(s)	10
BsrI	ACTGG	1 cut(s)	30
BssNI	GRCGYC	1 cut(s)	70
BstACI	GRCGYC	1 cut(s)	70
BstAPI	GCANNNNNTGC	1 cut(s)	140
BstMAI	GTCTC	2 cut(s)	10, 77
BstMWI	GCNNNNNNNGC	1 cut(s)	140
BsuI	GTATCC	1 cut(s)	182
BtsIMutI	CAGTG	1 cut(s)	37
CseI	GACGC	1 cut(s)	59
CviJI	RGCY	1 cut(s)	80
CviKI_1	RGCY	1 cut(s)	80
DraI	TTTAAA	1 cut(s)	154
Eco31I	GGTCTC	1 cut(s)	10
Eco57I	CTGAAG	1 cut(s)	149
Esp3I	CGTCTC	1 cut(s)	77
FaiI	YATR	2 cut(s)	53, 122
Fnu4HI	GCNGC	1 cut(s)	68
Fsp4HI	GCNGC	1 cut(s)	68
GluI	GCNGC	1 cut(s)	68
HgaI	GACGC	1 cut(s)	59
Hin1I	GRCGYC	1 cut(s)	70
HindIII	AAGCTT	1 cut(s)	78
HinfI	GANTC	1 cut(s)	92
HphI	GGTGA	2 cut(s)	19, 101
HpyAV	CCTTC	1 cut(s)	19
HpyCH4V	TGCA	3 cut(s)	126, 134, 143
HpyF10VI	GCNNNNNNNGC	1 cut(s)	140
Hsp92I	GRCGYC	1 cut(s)	70
LpnPI	CCDG	3 cut(s)	43, 72, 152
MboII	GAAGA	2 cut(s)	155, 174
MluCI	AATT	1 cut(s)	18
MlyI	GAGTC	1 cut(s)	101
MmeI	TCCRAC	1 cut(s)	39
MnlI	CCTC	1 cut(s)	55
MseI	TTAA	1 cut(s)	153
MwoI	GCNNNNNNNGC	1 cut(s)	140
PkrI	GCNGC	1 cut(s)	69
PleI	GAGTC	1 cut(s)	100
PpsI	GAGTC	1 cut(s)	100
SaqAI	TTAA	1 cut(s)	153
SatI	GCNGC	1 cut(s)	68
SchI	GAGTC	1 cut(s)	101
SetI	ASST	3 cut(s)	66, 82, 91
SgeI	CNNG	7 cut(s)	25, 42, 89, 99, 108, 156, 179
SmiI	ATTTAAAT	1 cut(s)	154
Sse9I	AATT	1 cut(s)	18
SsiI	CCGC	1 cut(s)	67
SwaI	ATTTAAAT	1 cut(s)	154
TaqI	TCGA	1 cut(s)	95
TasI	AATT	1 cut(s)	18
TauI	GCSGC	1 cut(s)	70
Tru1I	TTAA	1 cut(s)	153
Tru9I	TTAA	1 cut(s)	153
TscAI	CASTG	1 cut(s)	37
TspDTI	ATGAA	1 cut(s)	68
TspRI	CASTG	1 cut(s)	37
XapI	RAATTY	1 cut(s)	18

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.