Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0000810

Physical Location & Seq

Genomic Coordinates Reverse (-)

11090694 .. 11093766

Gene Structure 3073 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG131300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGACCGCCGCAGACCCGAGTCCGATCCCATGGCCCACGATCGGGTGGGTCGTGTCGTGGTACGCCTCCAACATCGGAGTTCTCCTGCTGAACAAGTATTTGCTGACCAATTACGGGTTCAAGTACCCGATTTTTCTGACGCTGTGTCACATGACGGCGTGTAGTGTTCTCAGCTACGTGGCCATAGCGTTGATGAAGGTGGCTCCTATGCAGAGCGTGAGGTCCAAGGTTCAGCTGGCGAAGATCGCGGGGCTCAGTGTCGTTTTTTGTTTTTCGGTGGTGTGCGGGAACGTGTCGTTGAGGTACCTTCCGGTGTCGTTTAACCAGGCCGTTGGCGCCACCACGCCGTTTTTTACCGCGGTTTTGGCCTTTTTGATGATCAAGAAGAGGGAGGAGTGGGTTACGTACAGCACCCTCATTCCGGTCGTCGCCGGAGTCATCATTGCTAGTGGGGGTGAACCAAGCTTCCAGCTCTTTGGGTTTATTATGTGTGTTACTGCTACGGCTGCCAGGGCATTCAAGTCGGTGCTTCAACAAATTTTGCTTTCTTCTGATGGGGAAAAGCTGAACTCCATGAACTTGCTGTTATACATGGCACCAATAGCTGTAATTTGTTTGCTCCCTGCAACAATATTGATGGAGAAAGATGTTGTTGGGATCACACTAGATCTTGCCAGAAAAGATATCAAACTTATTTGGTACCTCTTGTTCAATTCTTCTCTGGCTTATTTTGTGAACTTGACCAATTTCTTGGTCACCAAACACACAAGCGCTTTGACCCTCCAGGTAAATATAGTTTCACAATCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0032991 GO:0034641 GO:0034645 GO:0042254 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0071840 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L35Ae

Protein Analysis

269

Amino Acids

29.47

Weight (kDa)

9.22

Isoelectric Point (pI)

33.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPT	PF03151	17 - 263	6.4e-37	Triose-phosphate Transporter family
EamA	PF00892	43 - 150	4.9e-06	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000810)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11320 AT5G05820
fragaria_vesca	FvH4_3g37700 FvH4_6g12230 FvH4_6g12230 FvH4_7g23830 FvH4_7g23830 FvH4_7g23830 FvH4_7g23830 FvH4_7g23830
malus_domestica	MD01G1145600.v1.1 MD03G1078400.v1.1 MD04G1144900.v1.1 MD07G1212700.v1.1 MD12G1158900.v1.1
prunus_persica	Prupe.2G244900_v2.0.a1 Prupe.2G244900_v2.0.a1 Prupe.2G244900_v2.0.a1 Prupe.6G063400_v2.0.a1 Prupe.6G269300_v2.0.a1 Prupe.6G269300_v2.0.a1
pyrus_communis	pycom01g16510 pycom03g06280 pycom07g19540 pycom12g15080
rosa_chinensis	RchiOBHm_Chr1g0369201 RchiOBHm_Chr3g0464031 RchiOBHm_Chr5g0067971 RchiOBHm_Chr7g0183791
rosa_laevigata	RLG00000024727 RLG00000027147 RLG00000035948
rosa_multiflora	Rmu_co8032292.1_g000001 Rmu_sc0000435.1_g000038 Rmu_sc0001203.1_g000001 Rmu_sc0004616.1_g000004 Rmu_sc0005807.1_g000004 Rmu_sc0019331.1_g000001 Rmu_sc0028685.1_g000001
rosa_roxburghii	Rroxscaffold_1G00012630 Rroxscaffold_1G00013340 Rroxscaffold_4G00287870 Rroxscaffold_4G00291440 Rroxscaffold_5G00365160 Rroxscaffold_6G00416050
rosa_rugosa	Rorug01G0348800 Rorug01G0348800 Rorug01G0348800 Rorug01G0348900 Rorug03G0070200 Rorug04G0183800 Rorug05G0386900
rosa_samantha	Rh1AG355800 Rh1BG319400 Rh1CG333400 Rh1DG350100 Rh3BG131300 Rh3CG133600 Rh3DG132600 Rh5AG445800 Rh5AG536100 Rh5BG463300 Rh5CG485200 Rh5DG477300 Rh7CG459800
rosa_wichuraiana	Rw1G031400 Rw3G010730 Rw5G041630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	303, 699
AccB1I	GGYRCC	4 cut(s)	303, 335, 595, 699
AccII	CGCG	2 cut(s)	248, 359
AciI	CCGC	6 cut(s)	6, 9, 248, 285, 357, 359
AclWI	GGATC	2 cut(s)	19, 665
AcoI	YGGCCR	1 cut(s)	180
AcsI	RAATTY	1 cut(s)	537
AcyI	GRCGYC	1 cut(s)	336
AfaI	GTAC	5 cut(s)	62, 125, 305, 407, 701
AfeI	AGCGCT	1 cut(s)	772
AfiI	CCNNNNNNNGG	4 cut(s)	41, 42, 114, 421
AflIII	ACRYGT	1 cut(s)	291
AgsI	TTSAA	4 cut(s)	121, 520, 533, 712
AhdI	GACNNNNNGTC	1 cut(s)	144
AjnI	CCWGG	3 cut(s)	324, 509, 783
AjuI	GAANNNNNNNTTGG	2 cut(s)	101, 133
AloI	GAACNNNNNNTCC	2 cut(s)	450, 482
AluBI	AGCT	6 cut(s)	174, 235, 465, 472, 565, 605
AluI	AGCT	6 cut(s)	174, 235, 465, 472, 565, 605
AlwI	GGATC	2 cut(s)	19, 665
Ama87I	CYCGRG	1 cut(s)	16
Aor51HI	AGCGCT	1 cut(s)	772
AoxI	GGCC	4 cut(s)	32, 180, 327, 366
ApeKI	GCWGC	1 cut(s)	506
ApoI	RAATTY	1 cut(s)	537
Asp718I	GGTACC	2 cut(s)	303, 699
AspLEI	GCGC	2 cut(s)	338, 773
AspS9I	GGNCC	2 cut(s)	33, 222
AsuHPI	GGTGA	2 cut(s)	467, 748
AvaI	CYCGRG	1 cut(s)	16
AvaII	GGWCC	1 cut(s)	222
BalI	TGGCCA	1 cut(s)	182
BanI	GGYRCC	4 cut(s)	303, 335, 595, 699
BanII	GRGCYC	1 cut(s)	255
BbvI	GCAGC	1 cut(s)	493
BccI	CCATC	2 cut(s)	548, 631
BceAI	ACGGC	4 cut(s)	171, 314, 331, 519
BcgI	CGANNNNNNTGC	2 cut(s)	504, 538
BciT130I	CCWGG	3 cut(s)	326, 511, 785
BclI	TGATCA	1 cut(s)	378
BfaI	CTAG	2 cut(s)	447, 665
BfoI	RGCGCY	2 cut(s)	339, 774
BglII	AGATCT	1 cut(s)	667
BisI	GCNGC	2 cut(s)	9, 507
BlsI	GCNGC	2 cut(s)	10, 508
Bme1390I	CCNGG	3 cut(s)	326, 511, 785
Bme18I	GGWCC	1 cut(s)	222
BmeRI	GACNNNNNGTC	1 cut(s)	144
BmeT110I	CYCGRG	1 cut(s)	16
BmgT120I	GGNCC	2 cut(s)	33, 222
BmiI	GGNNCC	5 cut(s)	204, 305, 337, 597, 701
BmrFI	CCNGG	3 cut(s)	326, 511, 785
BoxI	GACNNNNGTC	1 cut(s)	18
BpmI	CTGGAG	1 cut(s)	767
BsaAI	YACGTR	2 cut(s)	178, 405
BsaHI	GRCGYC	1 cut(s)	336
BsaJI	CCNNGG	4 cut(s)	29, 225, 357, 510
BsaWI	WCCGGW	2 cut(s)	310, 421
Bsc4I	CCNNNNNNNGG	4 cut(s)	41, 42, 114, 421
Bse3DI	GCAATG	1 cut(s)	441
BseBI	CCWGG	3 cut(s)	326, 511, 785
BseDI	CCNNGG	4 cut(s)	29, 225, 357, 510
BseLI	CCNNNNNNNGG	4 cut(s)	41, 42, 114, 421
BseMI	GCAATG	1 cut(s)	441
BseMII	CTCAG	2 cut(s)	184, 268
BseRI	GAGGAG	1 cut(s)	407
BseXI	GCAGC	1 cut(s)	493
Bsh1236I	CGCG	2 cut(s)	248, 359
Bsh1285I	CGRYCG	2 cut(s)	42, 426
BshFI	GGCC	4 cut(s)	34, 182, 329, 368
BshNI	GGYRCC	4 cut(s)	303, 335, 595, 699
BsiEI	CGRYCG	2 cut(s)	42, 426
BsiHKCI	CYCGRG	1 cut(s)	16
BsiSI	CCGG	3 cut(s)	311, 422, 432
BslI	CCNNNNNNNGG	4 cut(s)	41, 42, 114, 421
BsmI	GAATGC	1 cut(s)	515
BsnI	GGCC	4 cut(s)	34, 182, 329, 368
BsoBI	CYCGRG	1 cut(s)	16
Bsp1286I	GDGCHC	1 cut(s)	255
Bsp143I	GATC	6 cut(s)	24, 39, 243, 378, 657, 667
Bsp19I	CCATGG	1 cut(s)	29
BspACI	CCGC	6 cut(s)	6, 9, 248, 285, 357, 359
BspANI	GGCC	4 cut(s)	34, 182, 329, 368
BspCNI	CTCAG	2 cut(s)	183, 267
BspFNI	CGCG	2 cut(s)	248, 359
BspLI	GGNNCC	5 cut(s)	204, 305, 337, 597, 701
BspPI	GGATC	2 cut(s)	19, 665
BspT107I	GGYRCC	4 cut(s)	303, 335, 595, 699
BsrDI	GCAATG	1 cut(s)	441
BssECI	CCNNGG	4 cut(s)	29, 225, 357, 510
BssMI	GATC	6 cut(s)	24, 39, 243, 378, 657, 667
BssNI	GRCGYC	1 cut(s)	336
BssT1I	CCWWGG	2 cut(s)	29, 225
Bst2UI	CCWGG	3 cut(s)	326, 511, 785
Bst6I	CTCTTC	1 cut(s)	380
BstACI	GRCGYC	1 cut(s)	336
BstBAI	YACGTR	2 cut(s)	178, 405
BstC8I	GCNNGC	1 cut(s)	237
BstDEI	CTNAG	2 cut(s)	170, 254
BstDSI	CCRYGG	2 cut(s)	29, 357
BstEII	GGTNACC	1 cut(s)	754
BstFNI	CGCG	2 cut(s)	248, 359
BstH2I	RGCGCY	2 cut(s)	339, 774
BstHHI	GCGC	2 cut(s)	338, 773
BstKTI	GATC	6 cut(s)	27, 42, 246, 381, 660, 670
BstMBI	GATC	6 cut(s)	24, 39, 243, 378, 657, 667
BstMCI	CGRYCG	2 cut(s)	42, 426
BstMWI	GCNNNNNNNGC	6 cut(s)	245, 335, 365, 506, 512, 602
BstNI	CCWGG	3 cut(s)	326, 511, 785
BstPAI	GACNNNNGTC	1 cut(s)	18
BstPI	GGTNACC	1 cut(s)	754
BstSCI	CCNGG	3 cut(s)	324, 509, 783
BstSNI	TACGTA	1 cut(s)	405
BstUI	CGCG	2 cut(s)	248, 359
BstV1I	GCAGC	1 cut(s)	493
BstX2I	RGATCY	1 cut(s)	667
BstXI	CCANNNNNNTGG	3 cut(s)	332, 476, 751
BstYI	RGATCY	1 cut(s)	667
BsuRI	GGCC	4 cut(s)	34, 182, 329, 368
BtgI	CCRYGG	2 cut(s)	29, 357
BtsIMutI	CAGTG	1 cut(s)	262
Cac8I	GCNNGC	1 cut(s)	237
CfoI	GCGC	2 cut(s)	338, 773
Cfr13I	GGNCC	2 cut(s)	33, 222
Cfr42I	CCGCGG	1 cut(s)	360
CseI	GACGC	1 cut(s)	148
Csp6I	GTAC	5 cut(s)	61, 124, 304, 406, 700
CviAII	CATG	4 cut(s)	30, 151, 574, 592
CviQI	GTAC	5 cut(s)	61, 124, 304, 406, 700
DdeI	CTNAG	2 cut(s)	170, 254
DinI	GGCGCC	1 cut(s)	337
DpnI	GATC	6 cut(s)	26, 41, 245, 380, 659, 669
DpnII	GATC	6 cut(s)	24, 39, 243, 378, 657, 667
DriI	GACNNNNNGTC	1 cut(s)	144
EaeI	YGGCCR	1 cut(s)	180
Eam1104I	CTCTTC	1 cut(s)	380
Eam1105I	GACNNNNNGTC	1 cut(s)	144
EarI	CTCTTC	1 cut(s)	380
Eco105I	TACGTA	1 cut(s)	405
Eco130I	CCWWGG	2 cut(s)	29, 225
Eco24I	GRGCYC	1 cut(s)	255
Eco32I	GATATC	1 cut(s)	685
Eco47I	GGWCC	1 cut(s)	222
Eco47III	AGCGCT	1 cut(s)	772
Eco88I	CYCGRG	1 cut(s)	16
Eco91I	GGTNACC	1 cut(s)	754
EcoO65I	GGTNACC	1 cut(s)	754
EcoRII	CCWGG	3 cut(s)	324, 509, 783
EcoRV	GATATC	1 cut(s)	685
EcoT14I	CCWWGG	2 cut(s)	29, 225
EcoT38I	GRGCYC	1 cut(s)	255
EgeI	GGCGCC	1 cut(s)	337
EheI	GGCGCC	1 cut(s)	337
ErhI	CCWWGG	2 cut(s)	29, 225
FaeI	CATG	4 cut(s)	33, 154, 577, 595
FaiI	YATR	9 cut(s)	31, 152, 185, 209, 488, 575, 589, 593, 794
FatI	CATG	4 cut(s)	29, 150, 573, 591
FauI	CCCGC	2 cut(s)	241, 278
FbaI	TGATCA	1 cut(s)	378
Fnu4HI	GCNGC	2 cut(s)	9, 507
FriOI	GRGCYC	1 cut(s)	255
Fsp4HI	GCNGC	2 cut(s)	9, 507
FspBI	CTAG	2 cut(s)	447, 665
GlaI	GCGC	2 cut(s)	337, 772
GluI	GCNGC	2 cut(s)	9, 507
GsuI	CTGGAG	1 cut(s)	767
HaeII	RGCGCY	2 cut(s)	339, 774
HaeIII	GGCC	4 cut(s)	34, 182, 329, 368
HapII	CCGG	3 cut(s)	311, 422, 432
HgaI	GACGC	1 cut(s)	148
HhaI	GCGC	2 cut(s)	338, 773
Hin1I	GRCGYC	1 cut(s)	336
Hin1II	CATG	4 cut(s)	33, 154, 577, 595
Hin6I	GCGC	2 cut(s)	336, 771
HinP1I	GCGC	2 cut(s)	336, 771
HindIII	AAGCTT	1 cut(s)	463
HinfI	GANTC	2 cut(s)	19, 435
HpaII	CCGG	3 cut(s)	311, 422, 432
HphI	GGTGA	2 cut(s)	467, 748
Hpy166II	GTNNAC	2 cut(s)	458, 736
Hpy188I	TCNGA	4 cut(s)	24, 77, 138, 553
Hpy188III	TCNNGA	1 cut(s)	382
Hpy8I	GTNNAC	2 cut(s)	458, 736
Hpy99I	CGWCG	1 cut(s)	431
HpyAV	CCTTC	2 cut(s)	190, 317
HpyCH4IV	ACGT	3 cut(s)	177, 291, 404
HpyCH4V	TGCA	2 cut(s)	211, 626
HpyF10VI	GCNNNNNNNGC	6 cut(s)	245, 335, 365, 506, 512, 602
HpyF3I	CTNAG	2 cut(s)	170, 254
HpySE526I	ACGT	3 cut(s)	177, 291, 404
Hsp92I	GRCGYC	1 cut(s)	336
Hsp92II	CATG	4 cut(s)	33, 154, 577, 595
HspAI	GCGC	2 cut(s)	336, 771
KasI	GGCGCC	1 cut(s)	335
KpnI	GGTACC	2 cut(s)	307, 703
Ksp22I	TGATCA	1 cut(s)	378
KspI	CCGCGG	1 cut(s)	360
Kzo9I	GATC	6 cut(s)	24, 39, 243, 378, 657, 667
LmnI	GCTCC	2 cut(s)	208, 624
Lsp1109I	GCAGC	1 cut(s)	493
MaeI	CTAG	2 cut(s)	447, 665
MaeII	ACGT	3 cut(s)	177, 291, 404
MaeIII	GTNAC	4 cut(s)	146, 400, 493, 754
MalI	GATC	6 cut(s)	26, 41, 245, 380, 659, 669
MboI	GATC	6 cut(s)	24, 39, 243, 378, 657, 667
MboII	GAAGA	4 cut(s)	253, 397, 540, 708
MflI	RGATCY	1 cut(s)	667
MhlI	GDGCHC	1 cut(s)	255
MlsI	TGGCCA	1 cut(s)	182
MluCI	AATT	5 cut(s)	109, 537, 609, 712, 745
MluNI	TGGCCA	1 cut(s)	182
Mly113I	GGCGCC	1 cut(s)	336
MlyI	GAGTC	2 cut(s)	28, 444
MmeI	TCCRAC	1 cut(s)	93
MnlI	CCTC	8 cut(s)	76, 213, 294, 381, 385, 425, 713, 791
Mox20I	TGGCCA	1 cut(s)	182
MscI	TGGCCA	1 cut(s)	182
MseI	TTAA	2 cut(s)	321, 808
Msp20I	TGGCCA	1 cut(s)	182
MspA1I	CMGCKG	2 cut(s)	235, 359
MspI	CCGG	3 cut(s)	311, 422, 432
MspR9I	CCNGG	3 cut(s)	326, 511, 785
Mva1269I	GAATGC	1 cut(s)	515
MvaI	CCWGG	3 cut(s)	326, 511, 785
MvnI	CGCG	2 cut(s)	248, 359
MwoI	GCNNNNNNNGC	6 cut(s)	245, 335, 365, 506, 512, 602
NarI	GGCGCC	1 cut(s)	336
NcoI	CCATGG	1 cut(s)	29
NdeII	GATC	6 cut(s)	24, 39, 243, 378, 657, 667
NlaIII	CATG	4 cut(s)	33, 154, 577, 595
NlaIV	GGNNCC	5 cut(s)	204, 305, 337, 597, 701
NmuCI	GTSAC	2 cut(s)	146, 754
PcsI	WCGNNNNNNNCGW	1 cut(s)	48
PctI	GAATGC	1 cut(s)	515
PkrI	GCNGC	2 cut(s)	10, 508
Ple19I	CGATCG	1 cut(s)	42
PleI	GAGTC	2 cut(s)	27, 443
PluTI	GGCGCC	1 cut(s)	339
PpsI	GAGTC	2 cut(s)	27, 443
Ppu21I	YACGTR	2 cut(s)	178, 405
PshAI	GACNNNNGTC	1 cut(s)	18
Psp6I	CCWGG	3 cut(s)	324, 509, 783
PspEI	GGTNACC	1 cut(s)	754
PspGI	CCWGG	3 cut(s)	324, 509, 783
PspN4I	GGNNCC	5 cut(s)	204, 305, 337, 597, 701
PspPI	GGNCC	2 cut(s)	33, 222
PsrI	GAACNNNNNNTAC	2 cut(s)	692, 724
PsuI	RGATCY	1 cut(s)	667
PvuI	CGATCG	1 cut(s)	42
PvuII	CAGCTG	1 cut(s)	235
RsaI	GTAC	5 cut(s)	62, 125, 305, 407, 701
RsaNI	GTAC	5 cut(s)	61, 124, 304, 406, 700
SacII	CCGCGG	1 cut(s)	360
SaqAI	TTAA	2 cut(s)	321, 808
SatI	GCNGC	2 cut(s)	9, 507
Sau3AI	GATC	6 cut(s)	24, 39, 243, 378, 657, 667
Sau96I	GGNCC	2 cut(s)	33, 222
SchI	GAGTC	2 cut(s)	28, 444
ScrFI	CCNGG	3 cut(s)	326, 511, 785
SduI	GDGCHC	1 cut(s)	255
SfoI	GGCGCC	1 cut(s)	337
Sfr303I	CCGCGG	1 cut(s)	360
SgrBI	CCGCGG	1 cut(s)	360
SinI	GGWCC	1 cut(s)	222
SnaBI	TACGTA	1 cut(s)	405
Sse9I	AATT	5 cut(s)	109, 537, 609, 712, 745
SsiI	CCGC	6 cut(s)	6, 9, 248, 285, 357, 359
SspDI	GGCGCC	1 cut(s)	335
SspI	AATATT	1 cut(s)	633
SspMI	CTAG	2 cut(s)	447, 665
StyD4I	CCNGG	3 cut(s)	324, 509, 783
StyI	CCWWGG	2 cut(s)	29, 225
TaiI	ACGT	3 cut(s)	180, 294, 407
TasI	AATT	5 cut(s)	109, 537, 609, 712, 745
TauI	GCSGC	1 cut(s)	11
Tru1I	TTAA	2 cut(s)	321, 808
Tru9I	TTAA	2 cut(s)	321, 808
TscAI	CASTG	1 cut(s)	262
TseFI	GTSAC	2 cut(s)	146, 754
TseI	GCWGC	1 cut(s)	506
Tsp45I	GTSAC	2 cut(s)	146, 754
TspDTI	ATGAA	2 cut(s)	209, 590
TspRI	CASTG	1 cut(s)	262
VpaK11BI	GGWCC	1 cut(s)	222
XapI	RAATTY	1 cut(s)	537
XcmI	CCANNNNNNNNNTGG	1 cut(s)	232
XspI	CTAG	2 cut(s)	447, 665

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.