Rmu_sc0005807.1_g000004

Ribosomal protein L35Ae

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005807.1
Physical Location & Seq
Reverse (-)
10685 .. 15177
4493 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005807.1_g000004.1.cds

Sequence Viewer

Length: 1209 bp
atggcacagattgcaatattgtctgcttcagcaagtcttatacccttcaatagtggtggtgcaaagcaattgagcaagtcattgcagcttttttcttcaagaagatatacaacttctactactactactagttcaccatcattaaccacaataaggtttagaagcaagagaattgggaaccttgaattttgggcaagagcagcagctagtcatggaagtttgggggaggtagatgagtggacattgccagataacaagccgtccgattcaaacccagcaccgccggcgatgaaggggaagagccgcttgttcacgatcgggctcgtgtcggcctggtactcatccaacattggcgttctgctgctgaacaagtacttgcttagcaactatggcttcaagtacccgatcttcctcaccatgtgccacatgacggcgtgttctcttctcagctacatcgcaattgcgtggatgaagatggtgccgatgcagaccattcgatcccgggttcagtttctgaagatcacggcgttgagtctcgtgttctgtgtttctgtggtgtttgggaacatttcgctgcggtatttgccggtgtcgtttaaccaggctataggggccaccacgccgttcttcactgccgttttcgcttactttatgaccctgaaaagggaggcttggctgacttacctgacgctcgttcctgtggttacaggggtcatcattgccagtgggggtgaaccaagtttccatctatttgggttcttaatttgtatcgcagcgacagctgccagggctcttaagtcagtgctacaagggattttactttcttctgaaggggagaagctgaattcgatgaacctcctattgtatatggctccgatagccgttgttttcctactccctgcaacacttatcatggaagataatgtcgttgggataacactagctcttgcaagagatgatgtcaagatcatatggtatctattattcaattcagcattggcatattttgtaaatctgaccaactttttggtcacgaaacacaccagtgctctgactcttcaggtactaggaaatgcaaagggcgctgtagctgtggttgtttcaatcttgatttttagaaatcctgtttctgtgactggaatgatgggttattcccttacagtctttggagtaattctatacagtgaagcgaagaaaagaagtaaatga

Protein Analysis

402

Amino Acids

43.88

Weight (kDa)

9.89

Isoelectric Point (pI)

36.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 478
AciI CCGC 3 cut(s) 281, 304, 577
AclWI GGATC 1 cut(s) 492
AcsI RAATTY 2 cut(s) 185, 844
AcuI CTGAAG 4 cut(s) 12, 536, 849, 1043
AdeI CACNNNGTG 1 cut(s) 420
AfaI GTAC 4 cut(s) 338, 374, 401, 1065
AfiI CCNNNNNNNGG 4 cut(s) 153, 430, 663, 664
AflII CTTAAG 1 cut(s) 794
AgsI TTSAA 7 cut(s) 49, 99, 185, 270, 397, 988, 1104
AhlI ACTAGT 1 cut(s) 128
AjnI CCWGG 3 cut(s) 332, 600, 785
AleI CACNNNNGTG 1 cut(s) 1044
AloI GAACNNNNNNTCC 2 cut(s) 726, 758
AluBI AGCT 7 cut(s) 88, 206, 450, 782, 841, 944, 1091
AluI AGCT 7 cut(s) 88, 206, 450, 782, 841, 944, 1091
Alw21I GWGCWC 1 cut(s) 1051
Alw26I GTCTC 1 cut(s) 539
AlwI GGATC 1 cut(s) 492
AlwNI CAGNNNCTG 1 cut(s) 514
Ama87I CYCGRG 1 cut(s) 501
AoxI GGCC 2 cut(s) 330, 612
ApeKI GCWGC 7 cut(s) 85, 200, 203, 361, 574, 773, 782
ApoI RAATTY 2 cut(s) 185, 844
ArsI GACNNNNNNTTYG 2 cut(s) 1009, 1041
AspLEI GCGC 1 cut(s) 1085
AspS9I GGNCC 1 cut(s) 612
AsuC2I CCSGG 2 cut(s) 502, 503
AsuHPI GGTGA 3 cut(s) 126, 406, 743
AvaI CYCGRG 1 cut(s) 501
BanI GGYRCC 1 cut(s) 478
BanII GRGCYC 2 cut(s) 324, 793
BarI GAAGNNNNNNTAC 2 cut(s) 392, 424
BauI CACGAG 2 cut(s) 323, 536
Bbv12I GWGCWC 1 cut(s) 1051
BbvI GCAGC 7 cut(s) 97, 212, 215, 348, 561, 769, 785
BccI CCATC 4 cut(s) 145, 469, 753, 1138
BceAI ACGGC 6 cut(s) 244, 447, 540, 607, 620, 866
BcgI CGANNNNNNTGC 2 cut(s) 476, 510
BciT130I CCWGG 3 cut(s) 334, 602, 787
BcnI CCSGG 2 cut(s) 502, 503
BcoDI GTCTC 1 cut(s) 539
BcuI ACTAGT 1 cut(s) 128
BfaI CTAG 4 cut(s) 129, 207, 941, 1067
BfmI CTRYAG 2 cut(s) 606, 1086
BfoI RGCGCY 1 cut(s) 1086
BfrI CTTAAG 1 cut(s) 794
BisI GCNGC 8 cut(s) 86, 201, 204, 304, 362, 575, 774, 783
BlpI GCTNAGC 1 cut(s) 380
BlsI GCNGC 8 cut(s) 87, 202, 205, 305, 363, 576, 775, 784
BmcAI AGTACT 1 cut(s) 374
Bme1390I CCNGG 5 cut(s) 334, 502, 503, 602, 787
BmeT110I CYCGRG 1 cut(s) 501
BmgT120I GGNCC 1 cut(s) 612
BmiI GGNNCC 4 cut(s) 179, 480, 613, 873
BmrFI CCNGG 5 cut(s) 334, 502, 503, 602, 787
BmsI GCATC 1 cut(s) 474
Bpu1102I GCTNAGC 1 cut(s) 380
BpuMI CCSGG 2 cut(s) 502, 503
BsaJI CCNNGG 2 cut(s) 501, 786
Bsc4I CCNNNNNNNGG 4 cut(s) 153, 430, 663, 664
Bse118I RCCGGY 2 cut(s) 283, 586
Bse1I ACTGG 3 cut(s) 723, 1044, 1141
Bse3DI GCAATG 3 cut(s) 80, 242, 717
BseBI CCWGG 3 cut(s) 334, 602, 787
BseDI CCNNGG 2 cut(s) 501, 786
BseGI GGATG 2 cut(s) 341, 474
BseLI CCNNNNNNNGG 4 cut(s) 153, 430, 663, 664
BseMI GCAATG 3 cut(s) 80, 242, 717
BseMII CTCAG 1 cut(s) 460
BseNI ACTGG 3 cut(s) 723, 1044, 1141
BseXI GCAGC 7 cut(s) 97, 212, 215, 348, 561, 769, 785
BseYI CCCAGC 1 cut(s) 274
Bsh1285I CGRYCG 1 cut(s) 318
BshFI GGCC 2 cut(s) 332, 614
BshNI GGYRCC 1 cut(s) 478
BsiEI CGRYCG 1 cut(s) 318
BsiHKAI GWGCWC 1 cut(s) 1051
BsiHKCI CYCGRG 1 cut(s) 501
BsiSI CCGG 3 cut(s) 284, 502, 587
BslI CCNNNNNNNGG 4 cut(s) 153, 430, 663, 664
BsmAI GTCTC 1 cut(s) 539
BsnI GGCC 2 cut(s) 332, 614
BsoBI CYCGRG 1 cut(s) 501
Bsp1286I GDGCHC 3 cut(s) 324, 793, 1051
Bsp143I GATC 5 cut(s) 315, 405, 497, 519, 966
Bsp1720I GCTNAGC 1 cut(s) 380
BspACI CCGC 3 cut(s) 281, 304, 577
BspANI GGCC 2 cut(s) 332, 614
BspCNI CTCAG 1 cut(s) 459
BspLI GGNNCC 4 cut(s) 179, 480, 613, 873
BspPI GGATC 1 cut(s) 492
BspQI GCTCTTC 1 cut(s) 293
BspT107I GGYRCC 1 cut(s) 478
BspTI CTTAAG 1 cut(s) 794
BsrDI GCAATG 3 cut(s) 80, 242, 717
BsrFI RCCGGY 2 cut(s) 283, 586
BsrI ACTGG 3 cut(s) 723, 1044, 1141
BssAI RCCGGY 2 cut(s) 283, 586
BssECI CCNNGG 2 cut(s) 501, 786
BssMI GATC 5 cut(s) 315, 405, 497, 519, 966
BssSI CACGAG 2 cut(s) 323, 536
Bst2BI CACGAG 2 cut(s) 323, 536
Bst2UI CCWGG 3 cut(s) 334, 602, 787
Bst4CI ACNGT 2 cut(s) 1162, 1184
Bst6I CTCTTC 3 cut(s) 293, 447, 1062
BstAFI CTTAAG 1 cut(s) 794
BstAPI GCANNNNNTGC 1 cut(s) 11
BstC8I GCNNGC 1 cut(s) 285
BstDEI CTNAG 2 cut(s) 380, 446
BstF5I GGATG 2 cut(s) 341, 474
BstH2I RGCGCY 1 cut(s) 1086
BstHHI GCGC 1 cut(s) 1085
BstKTI GATC 5 cut(s) 318, 408, 500, 522, 969
BstMAI GTCTC 1 cut(s) 539
BstMBI GATC 5 cut(s) 315, 405, 497, 519, 966
BstMCI CGRYCG 1 cut(s) 318
BstNI CCWGG 3 cut(s) 334, 602, 787
BstSCI CCNGG 5 cut(s) 332, 500, 501, 600, 785
BstSFI CTRYAG 2 cut(s) 606, 1086
BstV1I GCAGC 7 cut(s) 97, 212, 215, 348, 561, 769, 785
BstXI CCANNNNNNTGG 2 cut(s) 752, 1027
BsuRI GGCC 2 cut(s) 332, 614
BtgZI GCGATG 2 cut(s) 302, 439
BtsCI GGATG 2 cut(s) 341, 474
BtsI GCAGTG 1 cut(s) 630
BtsIMutI CAGTG 5 cut(s) 630, 730, 807, 1051, 1189
Cac8I GCNNGC 1 cut(s) 285
CaiI CAGNNNCTG 1 cut(s) 514
CfoI GCGC 1 cut(s) 1085
Cfr10I RCCGGY 2 cut(s) 283, 586
Cfr13I GGNCC 1 cut(s) 612
Cfr9I CCCGGG 1 cut(s) 501
CseI GACGC 1 cut(s) 697
Csp6I GTAC 4 cut(s) 337, 373, 400, 1064
CspCI CAANNNNNGTGG 2 cut(s) 37, 72
CviAII CATG 4 cut(s) 212, 418, 427, 913
CviQI GTAC 4 cut(s) 337, 373, 400, 1064
DdeI CTNAG 2 cut(s) 380, 446
DpnI GATC 5 cut(s) 317, 407, 499, 521, 968
DpnII GATC 5 cut(s) 315, 405, 497, 519, 966
DraIII CACNNNGTG 1 cut(s) 420
Eam1104I CTCTTC 3 cut(s) 293, 447, 1062
EarI CTCTTC 3 cut(s) 293, 447, 1062
Eco24I GRGCYC 2 cut(s) 324, 793
Eco57I CTGAAG 4 cut(s) 12, 536, 849, 1043
Eco88I CYCGRG 1 cut(s) 501
EcoRI GAATTC 1 cut(s) 844
EcoRII CCWGG 3 cut(s) 332, 600, 785
EcoT38I GRGCYC 2 cut(s) 324, 793
FaeI CATG 4 cut(s) 215, 421, 430, 916
FalI AAGNNNNNCTT 4 cut(s) 290, 322, 655, 687
FatI CATG 4 cut(s) 211, 417, 426, 912
FauNDI CATATG 1 cut(s) 971
Fnu4HI GCNGC 8 cut(s) 86, 201, 204, 304, 362, 575, 774, 783
FokI GGATG 2 cut(s) 328, 481
FriOI GRGCYC 2 cut(s) 324, 793
Fsp4HI GCNGC 8 cut(s) 86, 201, 204, 304, 362, 575, 774, 783
FspBI CTAG 4 cut(s) 129, 207, 941, 1067
GlaI GCGC 1 cut(s) 1084
GluI GCNGC 8 cut(s) 86, 201, 204, 304, 362, 575, 774, 783
GsaI CCCAGC 1 cut(s) 278
HaeII RGCGCY 1 cut(s) 1086
HaeIII GGCC 2 cut(s) 332, 614
HapII CCGG 3 cut(s) 284, 502, 587
HgaI GACGC 1 cut(s) 697
HhaI GCGC 1 cut(s) 1085
Hin1II CATG 4 cut(s) 215, 421, 430, 916
Hin6I GCGC 1 cut(s) 1083
HinP1I GCGC 1 cut(s) 1083
HinfI GANTC 3 cut(s) 266, 532, 1054
HpaII CCGG 3 cut(s) 284, 502, 587
HphI GGTGA 3 cut(s) 126, 406, 743
Hpy166II GTNNAC 4 cut(s) 134, 240, 312, 734
Hpy188I TCNGA 6 cut(s) 265, 516, 829, 876, 1017, 1053
Hpy188III TCNNGA 5 cut(s) 99, 313, 964, 1033, 1108
Hpy8I GTNNAC 4 cut(s) 134, 240, 312, 734
HpyAV CCTTC 3 cut(s) 55, 286, 824
HpyCH4III ACNGT 2 cut(s) 1162, 1184
HpyCH4V TGCA 7 cut(s) 14, 62, 85, 487, 902, 950, 1076
HpyF3I CTNAG 2 cut(s) 380, 446
Hsp92II CATG 4 cut(s) 215, 421, 430, 916
HspAI GCGC 1 cut(s) 1083
KroI GCCGGC 1 cut(s) 283
KroNI GCCGGC 1 cut(s) 285
Kzo9I GATC 5 cut(s) 315, 405, 497, 519, 966
LguI GCTCTTC 1 cut(s) 293
LmnI GCTCC 1 cut(s) 877
Lsp1109I GCAGC 7 cut(s) 97, 212, 215, 348, 561, 769, 785
LweI GCATC 1 cut(s) 474
MaeI CTAG 4 cut(s) 129, 207, 941, 1067
MaeIII GTNAC 3 cut(s) 703, 1030, 1132
MalI GATC 5 cut(s) 317, 407, 499, 521, 968
MboI GATC 5 cut(s) 315, 405, 497, 519, 966
MfeI CAATTG 2 cut(s) 68, 459
MhlI GDGCHC 3 cut(s) 324, 793, 1051
MluCI AATT 8 cut(s) 68, 171, 185, 459, 762, 844, 988, 1173
MlyI GAGTC 2 cut(s) 541, 1048
MmeI TCCRAC 1 cut(s) 369
MnlI CCTC 4 cut(s) 220, 422, 661, 866
MreI CGCCGGCG 1 cut(s) 283
MroNI GCCGGC 1 cut(s) 283
MseI TTAA 4 cut(s) 143, 597, 761, 795
MslI CAYNNNNRTG 1 cut(s) 1044
MspA1I CMGCKG 1 cut(s) 782
MspCI CTTAAG 1 cut(s) 794
MspI CCGG 3 cut(s) 284, 502, 587
MspR9I CCNGG 5 cut(s) 334, 502, 503, 602, 787
MunI CAATTG 2 cut(s) 68, 459
MvaI CCWGG 3 cut(s) 334, 602, 787
NaeI GCCGGC 1 cut(s) 285
NciI CCSGG 2 cut(s) 502, 503
NdeI CATATG 1 cut(s) 971
NdeII GATC 5 cut(s) 315, 405, 497, 519, 966
NgoMIV GCCGGC 1 cut(s) 283
NlaIII CATG 4 cut(s) 215, 421, 430, 916
NlaIV GGNNCC 4 cut(s) 179, 480, 613, 873
NmuCI GTSAC 2 cut(s) 1030, 1132
OliI CACNNNNGTG 1 cut(s) 1044
PciSI GCTCTTC 1 cut(s) 293
PdiI GCCGGC 1 cut(s) 285
PfeI GAWTC 1 cut(s) 266
PkrI GCNGC 8 cut(s) 87, 202, 205, 305, 363, 576, 775, 784
Ple19I CGATCG 1 cut(s) 318
PleI GAGTC 2 cut(s) 540, 1048
PpsI GAGTC 2 cut(s) 540, 1048
Psp6I CCWGG 3 cut(s) 332, 600, 785
PspFI CCCAGC 1 cut(s) 274
PspGI CCWGG 3 cut(s) 332, 600, 785
PspN4I GGNNCC 4 cut(s) 179, 480, 613, 873
PspPI GGNCC 1 cut(s) 612
PstNI CAGNNNCTG 1 cut(s) 514
PvuI CGATCG 1 cut(s) 318
PvuII CAGCTG 1 cut(s) 782
RsaI GTAC 4 cut(s) 338, 374, 401, 1065
RsaNI GTAC 4 cut(s) 337, 373, 400, 1064
RseI CAYNNNNRTG 1 cut(s) 1044
SapI GCTCTTC 1 cut(s) 293
SaqAI TTAA 4 cut(s) 143, 597, 761, 795
SatI GCNGC 8 cut(s) 86, 201, 204, 304, 362, 575, 774, 783
Sau3AI GATC 5 cut(s) 315, 405, 497, 519, 966
Sau96I GGNCC 1 cut(s) 612
ScaI AGTACT 1 cut(s) 374
SchI GAGTC 2 cut(s) 541, 1048
ScrFI CCNGG 5 cut(s) 334, 502, 503, 602, 787
SduI GDGCHC 3 cut(s) 324, 793, 1051
SfaNI GCATC 1 cut(s) 474
SfcI CTRYAG 2 cut(s) 606, 1086
SgrAI CRCCGGYG 1 cut(s) 283
SmaI CCCGGG 1 cut(s) 503
SmiMI CAYNNNNRTG 1 cut(s) 1044
SmlI CTYRAG 1 cut(s) 794
SmoI CTYRAG 1 cut(s) 794
SpeI ACTAGT 1 cut(s) 128
Sse9I AATT 8 cut(s) 68, 171, 185, 459, 762, 844, 988, 1173
SsiI CCGC 3 cut(s) 281, 304, 577
SspI AATATT 1 cut(s) 18
SspMI CTAG 4 cut(s) 129, 207, 941, 1067
StyD4I CCNGG 5 cut(s) 332, 500, 501, 600, 785
TaaI ACNGT 2 cut(s) 1162, 1184
TaqI TCGA 2 cut(s) 496, 848
TasI AATT 8 cut(s) 68, 171, 185, 459, 762, 844, 988, 1173
TatI WGTACW 1 cut(s) 372
TauI GCSGC 1 cut(s) 306
TfiI GAWTC 1 cut(s) 266
Tru1I TTAA 4 cut(s) 143, 597, 761, 795
Tru9I TTAA 4 cut(s) 143, 597, 761, 795
TscAI CASTG 5 cut(s) 637, 730, 807, 1051, 1189
TseFI GTSAC 2 cut(s) 1030, 1132
TseI GCWGC 7 cut(s) 85, 200, 203, 361, 574, 773, 782
Tsp45I GTSAC 2 cut(s) 1030, 1132
TspDTI ATGAA 3 cut(s) 305, 485, 866
TspMI CCCGGG 1 cut(s) 501
TspRI CASTG 5 cut(s) 637, 730, 807, 1051, 1189
Vha464I CTTAAG 1 cut(s) 794
XapI RAATTY 2 cut(s) 185, 844
XmaI CCCGGG 1 cut(s) 501
XspI CTAG 4 cut(s) 129, 207, 941, 1067
ZrmI AGTACT 1 cut(s) 374
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.