AT3G51020

No description available

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Forward (+)
18949645 .. 18950221
577 bp
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UTR
Exon/CDS
Intron
AT3G51020.1

Sequence Viewer

Length: 402 bp
ATGTTTTCGTCAAGTCGTACATCTACAAGCCTGACTTGTGGGTTTAAAGTGAACACTAGCTCTCCCGAATGGCACAAGAGCATGACCAAAATCCTCAAGAAAATCAAAGGAGGGAATTTTTGGATAGACGTGGACGAAGGAATGGCATACGTCACGGGTCATGGCGATCCAAACAAGCTATTGAAACTAATGGGTTCAAAGAGAGGAAAAGATGCTGAAATGGCTTTTGTGAAAACCGGAACGCAACATCATCAACATCATCATCATCATGATCCCAGTTTTTACAGTCAGAGCTCATACCCCGGCCAATGGGGAGGGTACTACCCTGTTGGCTCGACGATGCAACCTTACCATCAACAATATCCATATTCCGGCGGATATAATAACTACGGTTATTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

133

Amino Acids

15.11

Weight (kDa)

9.24

Isoelectric Point (pI)

31.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 375
AclWI GGATC 2 cut(s) 161, 266
AcoI YGGCCR 1 cut(s) 304
AcsI RAATTY 1 cut(s) 115
AfaI GTAC 2 cut(s) 19, 320
AfiI CCNNNNNNNGG 2 cut(s) 309, 371
AgsI TTSAA 2 cut(s) 184, 198
AjiI CACGTC 1 cut(s) 130
AluBI AGCT 3 cut(s) 60, 178, 294
AluI AGCT 3 cut(s) 60, 178, 294
Alw21I GWGCWC 1 cut(s) 296
AlwI GGATC 2 cut(s) 161, 266
AoxI GGCC 1 cut(s) 304
ApoI RAATTY 1 cut(s) 115
AsuC2I CCSGG 1 cut(s) 303
BanII GRGCYC 1 cut(s) 296
Bbv12I GWGCWC 1 cut(s) 296
BccI CCATC 1 cut(s) 360
BcnI CCSGG 1 cut(s) 303
BfaI CTAG 1 cut(s) 57
Bme1390I CCNGG 1 cut(s) 303
BmgBI CACGTC 1 cut(s) 130
BmrFI CCNGG 1 cut(s) 303
BmrI ACTGGG 1 cut(s) 270
BmsI GCATC 2 cut(s) 202, 330
BmuI ACTGGG 1 cut(s) 270
BpuEI CTTGAG 1 cut(s) 80
BpuMI CCSGG 1 cut(s) 303
BsaJI CCNNGG 1 cut(s) 301
BsaWI WCCGGW 1 cut(s) 236
BsaXI ACNNNNNCTCC 2 cut(s) 46, 76
Bsc4I CCNNNNNNNGG 2 cut(s) 309, 371
Bse1I ACTGG 1 cut(s) 276
BseDI CCNNGG 1 cut(s) 301
BseLI CCNNNNNNNGG 2 cut(s) 309, 371
BseNI ACTGG 1 cut(s) 276
BshFI GGCC 1 cut(s) 306
BsiHKAI GWGCWC 1 cut(s) 296
BsiSI CCGG 3 cut(s) 237, 303, 372
BslI CCNNNNNNNGG 2 cut(s) 309, 371
BsnI GGCC 1 cut(s) 306
Bsp1286I GDGCHC 1 cut(s) 296
Bsp143I GATC 2 cut(s) 166, 271
BspACI CCGC 1 cut(s) 375
BspANI GGCC 1 cut(s) 306
BspHI TCATGA 1 cut(s) 268
BspPI GGATC 2 cut(s) 161, 266
BsrI ACTGG 1 cut(s) 276
BssECI CCNNGG 1 cut(s) 301
BssMI GATC 2 cut(s) 166, 271
Bst4CI ACNGT 2 cut(s) 287, 392
BstKTI GATC 2 cut(s) 169, 274
BstMBI GATC 2 cut(s) 166, 271
BstMWI GCNNNNNNNGC 1 cut(s) 221
BstSCI CCNGG 1 cut(s) 301
BsuRI GGCC 1 cut(s) 306
BtrI CACGTC 1 cut(s) 130
CciI TCATGA 1 cut(s) 268
Csp6I GTAC 2 cut(s) 18, 319
CviAII CATG 3 cut(s) 82, 161, 269
CviJI RGCY 7 cut(s) 30, 60, 178, 224, 294, 306, 333
CviKI_1 RGCY 7 cut(s) 30, 60, 178, 224, 294, 306, 333
CviQI GTAC 2 cut(s) 18, 319
DpnI GATC 2 cut(s) 168, 273
DpnII GATC 2 cut(s) 166, 271
DraI TTTAAA 1 cut(s) 46
EaeI YGGCCR 1 cut(s) 304
EciI GGCGGA 1 cut(s) 390
Ecl136II GAGCTC 1 cut(s) 294
Eco24I GRGCYC 1 cut(s) 296
Eco53kI GAGCTC 1 cut(s) 294
EcoICRI GAGCTC 1 cut(s) 294
EcoT38I GRGCYC 1 cut(s) 296
FaeI CATG 3 cut(s) 85, 164, 272
FaiI YATR 7 cut(s) 83, 148, 162, 270, 298, 367, 381
FalI AAGNNNNNCTT 2 cut(s) 19, 51
FatI CATG 3 cut(s) 81, 160, 268
FriOI GRGCYC 1 cut(s) 296
FspBI CTAG 1 cut(s) 57
HaeIII GGCC 1 cut(s) 306
HapII CCGG 3 cut(s) 237, 303, 372
Hin1II CATG 3 cut(s) 85, 164, 272
HpaII CCGG 3 cut(s) 237, 303, 372
Hpy166II GTNNAC 2 cut(s) 52, 133
Hpy188I TCNGA 1 cut(s) 291
Hpy188III TCNNGA 3 cut(s) 65, 97, 269
Hpy8I GTNNAC 2 cut(s) 52, 133
Hpy99I CGWCG 1 cut(s) 340
HpyAV CCTTC 1 cut(s) 131
HpyCH4III ACNGT 2 cut(s) 287, 392
HpyCH4IV ACGT 2 cut(s) 129, 150
HpyCH4V TGCA 1 cut(s) 343
HpyF10VI GCNNNNNNNGC 1 cut(s) 221
HpySE526I ACGT 2 cut(s) 129, 150
Hsp92II CATG 3 cut(s) 85, 164, 272
Kzo9I GATC 2 cut(s) 166, 271
LpnPI CCDG 6 cut(s) 44, 250, 289, 316, 339, 385
LweI GCATC 2 cut(s) 202, 330
MaeI CTAG 1 cut(s) 57
MaeII ACGT 2 cut(s) 129, 150
MaeIII GTNAC 1 cut(s) 151
MalI GATC 2 cut(s) 168, 273
MboI GATC 2 cut(s) 166, 271
MhlI GDGCHC 1 cut(s) 296
MluCI AATT 1 cut(s) 115
MnlI CCTC 4 cut(s) 104, 104, 197, 308
MseI TTAA 1 cut(s) 45
MslI CAYNNNNRTG 1 cut(s) 267
MspI CCGG 3 cut(s) 237, 303, 372
MspR9I CCNGG 1 cut(s) 303
MwoI GCNNNNNNNGC 1 cut(s) 221
NciI CCSGG 1 cut(s) 303
NdeII GATC 2 cut(s) 166, 271
NlaIII CATG 3 cut(s) 85, 164, 272
NmuCI GTSAC 1 cut(s) 151
PagI TCATGA 1 cut(s) 268
Psp124BI GAGCTC 1 cut(s) 296
RsaI GTAC 2 cut(s) 19, 320
RsaNI GTAC 2 cut(s) 18, 319
RseI CAYNNNNRTG 1 cut(s) 267
SacI GAGCTC 1 cut(s) 296
SaqAI TTAA 1 cut(s) 45
Sau3AI GATC 2 cut(s) 166, 271
ScrFI CCNGG 1 cut(s) 303
SduI GDGCHC 1 cut(s) 296
SetI ASST 6 cut(s) 62, 132, 153, 180, 296, 349
SfaNI GCATC 2 cut(s) 202, 330
SmiMI CAYNNNNRTG 1 cut(s) 267
SmlI CTYRAG 1 cut(s) 95
SmoI CTYRAG 1 cut(s) 95
Sse9I AATT 1 cut(s) 115
SsiI CCGC 1 cut(s) 375
SspMI CTAG 1 cut(s) 57
SstI GAGCTC 1 cut(s) 296
StyD4I CCNGG 1 cut(s) 301
TaaI ACNGT 2 cut(s) 287, 392
TaiI ACGT 2 cut(s) 132, 153
TaqI TCGA 1 cut(s) 335
TasI AATT 1 cut(s) 115
Tru1I TTAA 1 cut(s) 45
Tru9I TTAA 1 cut(s) 45
TseFI GTSAC 1 cut(s) 151
Tsp45I GTSAC 1 cut(s) 151
XapI RAATTY 1 cut(s) 115
XspI CTAG 1 cut(s) 57
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.