Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0001391

Physical Location & Seq

Genomic Coordinates Forward (+)

47600693 .. 47601488

Gene Structure 796 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G586300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

CCGCCGGCTATACCGTTGAAAATTCCATCTGCAGAGTACAGCCGGGTGTCTTATACCATTGATGGACAAGCCGGGATTGCACATGTTTCGGGGACAATCGATCCGGACACCCTTATGAAGTTATTAGCTCAATCAGGGAAGCATGCAGAGCTACTTAGGGATGACTCAGGATATAAGCATCAAAATGGACATGGTTATGGGCAGAGTTATTATAATAATCATGATTATGGATATTATAATCCCAATGGAACAGGTTCCTACCATGCAACAACATATCGCTACCATCATCAGCTAGTACCTAATTACTATGAACCGAAAGCGCCACCGTTGAGTTTTCCACAGCCACCACCGTGGAGGGAAATTCACCCGTTTTATAATCCGGACACCCAATACACCATCATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

135

Amino Acids

15.23

Weight (kDa)

6.53

Isoelectric Point (pI)

27.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001391)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51020 AT5G66370
fragaria_vesca	FvH4_3g23891 FvH4_6g53281 FvH4_6g53282
malus_domestica	MD09G1012100.v1.1 MD17G1012800.v1.1
prunus_persica	Prupe.1G586300_v2.0.a1 Prupe.3G304800_v2.0.a1 Prupe.3G304900_v2.0.a1 Prupe.4G231200_v2.0.a1 Prupe.5G226000_v2.0.a1 Prupe.5G226000_v2.0.a1 Prupe.5G226000_v2.0.a1
pyrus_communis	pycom06g19740
rosa_chinensis	RchiOBHm_Chr2g0175421 RchiOBHm_Chr2g0175431 RchiOBHm_Chr5g0042401 RchiOBHm_Chr7g0179321
rosa_laevigata	RLG00000005365 RLG00000022325 RLG00000022326 RLG00000034120 RLG00000035846
rosa_multiflora	Rmu_co8392657.1_g000001 Rmu_sc0001751.1_g000002 Rmu_sc0008980.1_g000002
rosa_roxburghii	Rroxscaffold_1G00038310 Rroxscaffold_2G00077400 Rroxscaffold_3G00274120
rosa_rugosa	Rorug02G0583800 Rorug02G0583900.1 Rorug02G0584000 Rorug02G0584100 Rorug06G0423400
rosa_samantha	Rh2AG663900 Rh2AG664000 Rh2BG674700 Rh2BG674800 Rh2CG637900 Rh2CG638000 Rh2DG688700 Rh2DG688800 Rh5AG285800 Rh5AG285900 Rh5BG290600 Rh5CG322600 Rh5DG300400 Rh7AG022700 Rh7CG023700
rosa_wichuraiana	Rw2G054410 Rw2G054420 Rw5G026530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	213, 237, 375
AccIII	TCCGGA	2 cut(s)	103, 379
AciI	CCGC	1 cut(s)	2
AclWI	GGATC	1 cut(s)	95
AcsI	RAATTY	2 cut(s)	21, 360
AfaI	GTAC	2 cut(s)	38, 297
AflIII	ACRYGT	1 cut(s)	82
AgsI	TTSAA	1 cut(s)	19
AleI	CACNNNNGTG	1 cut(s)	349
AluBI	AGCT	3 cut(s)	128, 151, 292
AluI	AGCT	3 cut(s)	128, 151, 292
AlwI	GGATC	1 cut(s)	95
Aor13HI	TCCGGA	2 cut(s)	103, 379
ApoI	RAATTY	2 cut(s)	21, 360
Asp700I	GAANNNNTTC	1 cut(s)	253
AspLEI	GCGC	1 cut(s)	322
AsuC2I	CCSGG	2 cut(s)	44, 73
AsuHPI	GGTGA	1 cut(s)	356
BccI	CCATC	4 cut(s)	34, 56, 291, 404
BcgI	CGANNNNNNTGC	2 cut(s)	69, 103
BcnI	CCSGG	2 cut(s)	44, 73
BfaI	CTAG	1 cut(s)	293
BfmI	CTRYAG	1 cut(s)	30
BfoI	RGCGCY	1 cut(s)	323
Bme1390I	CCNGG	2 cut(s)	44, 73
BmiI	GGNNCC	1 cut(s)	256
BmrFI	CCNGG	2 cut(s)	44, 73
BmsI	GCATC	1 cut(s)	187
BpuMI	CCSGG	2 cut(s)	44, 73
Bsa29I	ATCGAT	1 cut(s)	99
BsaJI	CCNNGG	1 cut(s)	350
BsaWI	WCCGGW	2 cut(s)	103, 379
Bse118I	RCCGGY	1 cut(s)	4
BseAI	TCCGGA	2 cut(s)	103, 379
BseCI	ATCGAT	1 cut(s)	99
BseDI	CCNNGG	1 cut(s)	350
BseGI	GGATG	1 cut(s)	166
BseMII	CTCAG	1 cut(s)	180
BshVI	ATCGAT	1 cut(s)	99
BsiSI	CCGG	5 cut(s)	5, 43, 72, 104, 380
BslFI	GGGAC	1 cut(s)	106
BsmFI	GGGAC	1 cut(s)	106
Bsp13I	TCCGGA	2 cut(s)	103, 379
Bsp143I	GATC	1 cut(s)	100
BspACI	CCGC	1 cut(s)	2
BspCNI	CTCAG	1 cut(s)	179
BspDI	ATCGAT	1 cut(s)	99
BspEI	TCCGGA	2 cut(s)	103, 379
BspHI	TCATGA	1 cut(s)	220
BspLI	GGNNCC	1 cut(s)	256
BspMAI	CTGCAG	1 cut(s)	34
BspPI	GGATC	1 cut(s)	95
BsrFI	RCCGGY	1 cut(s)	4
BssAI	RCCGGY	1 cut(s)	4
BssECI	CCNNGG	1 cut(s)	350
BssMI	GATC	1 cut(s)	100
Bst4CI	ACNGT	3 cut(s)	15, 327, 351
BstC8I	GCNNGC	2 cut(s)	6, 144
BstDEI	CTNAG	2 cut(s)	155, 166
BstDSI	CCRYGG	1 cut(s)	350
BstF5I	GGATG	1 cut(s)	166
BstH2I	RGCGCY	1 cut(s)	323
BstHHI	GCGC	1 cut(s)	322
BstKTI	GATC	1 cut(s)	103
BstMBI	GATC	1 cut(s)	100
BstMWI	GCNNNNNNNGC	2 cut(s)	77, 148
BstNSI	RCATGY	2 cut(s)	86, 146
BstSCI	CCNGG	2 cut(s)	42, 71
BstSFI	CTRYAG	1 cut(s)	30
BstXI	CCANNNNNNTGG	1 cut(s)	351
Bsu15I	ATCGAT	1 cut(s)	99
BsuTUI	ATCGAT	1 cut(s)	99
BtgI	CCRYGG	1 cut(s)	350
BtsCI	GGATG	1 cut(s)	166
Cac8I	GCNNGC	2 cut(s)	6, 144
CciI	TCATGA	1 cut(s)	220
CfoI	GCGC	1 cut(s)	322
Cfr10I	RCCGGY	1 cut(s)	4
ClaI	ATCGAT	1 cut(s)	99
Csp6I	GTAC	2 cut(s)	37, 296
CviAII	CATG	6 cut(s)	83, 143, 191, 221, 263, 400
CviJI	RGCY	7 cut(s)	8, 42, 71, 128, 151, 292, 343
CviKI_1	RGCY	7 cut(s)	8, 42, 71, 128, 151, 292, 343
CviQI	GTAC	2 cut(s)	37, 296
DdeI	CTNAG	2 cut(s)	155, 166
DpnI	GATC	1 cut(s)	102
DpnII	GATC	1 cut(s)	100
FaeI	CATG	6 cut(s)	86, 146, 194, 224, 266, 403
FaqI	GGGAC	1 cut(s)	106
FatI	CATG	6 cut(s)	82, 142, 190, 220, 262, 399
FokI	GGATG	1 cut(s)	173
FspBI	CTAG	1 cut(s)	293
GlaI	GCGC	1 cut(s)	321
HaeII	RGCGCY	1 cut(s)	323
HapII	CCGG	5 cut(s)	5, 43, 72, 104, 380
HhaI	GCGC	1 cut(s)	322
Hin1II	CATG	6 cut(s)	86, 146, 194, 224, 266, 403
Hin6I	GCGC	1 cut(s)	320
HinP1I	GCGC	1 cut(s)	320
HinfI	GANTC	1 cut(s)	164
HpaII	CCGG	5 cut(s)	5, 43, 72, 104, 380
HphI	GGTGA	1 cut(s)	356
Hpy188III	TCNNGA	4 cut(s)	104, 168, 221, 380
HpyCH4III	ACNGT	3 cut(s)	15, 327, 351
HpyCH4V	TGCA	4 cut(s)	32, 80, 146, 266
HpyF10VI	GCNNNNNNNGC	2 cut(s)	77, 148
HpyF3I	CTNAG	2 cut(s)	155, 166
Hsp92II	CATG	6 cut(s)	86, 146, 194, 224, 266, 403
HspAI	GCGC	1 cut(s)	320
Kpn2I	TCCGGA	2 cut(s)	103, 379
KroI	GCCGGC	1 cut(s)	4
KroNI	GCCGGC	1 cut(s)	6
Kzo9I	GATC	1 cut(s)	100
LpnPI	CCDG	8 cut(s)	18, 56, 85, 117, 120, 153, 237, 393
LweI	GCATC	1 cut(s)	187
MaeI	CTAG	1 cut(s)	293
MalI	GATC	1 cut(s)	102
MboI	GATC	1 cut(s)	100
MluCI	AATT	3 cut(s)	21, 301, 360
MlyI	GAGTC	1 cut(s)	158
MnlI	CCTC	1 cut(s)	348
MroI	TCCGGA	2 cut(s)	103, 379
MroNI	GCCGGC	1 cut(s)	4
MroXI	GAANNNNTTC	1 cut(s)	253
MslI	CAYNNNNRTG	6 cut(s)	113, 183, 195, 225, 349, 398
MspI	CCGG	5 cut(s)	5, 43, 72, 104, 380
MspR9I	CCNGG	2 cut(s)	44, 73
MwoI	GCNNNNNNNGC	2 cut(s)	77, 148
NaeI	GCCGGC	1 cut(s)	6
NciI	CCSGG	2 cut(s)	44, 73
NdeII	GATC	1 cut(s)	100
NgoMIV	GCCGGC	1 cut(s)	4
NlaIII	CATG	6 cut(s)	86, 146, 194, 224, 266, 403
NlaIV	GGNNCC	1 cut(s)	256
NspI	RCATGY	2 cut(s)	86, 146
OliI	CACNNNNGTG	1 cut(s)	349
PaeI	GCATGC	1 cut(s)	146
PagI	TCATGA	1 cut(s)	220
PciI	ACATGT	1 cut(s)	82
PdiI	GCCGGC	1 cut(s)	6
PdmI	GAANNNNTTC	1 cut(s)	253
PleI	GAGTC	1 cut(s)	158
PpsI	GAGTC	1 cut(s)	158
PscI	ACATGT	1 cut(s)	82
PsiI	TTATAA	3 cut(s)	213, 237, 375
PspN4I	GGNNCC	1 cut(s)	256
PstI	CTGCAG	1 cut(s)	34
RsaI	GTAC	2 cut(s)	38, 297
RsaNI	GTAC	2 cut(s)	37, 296
RseI	CAYNNNNRTG	6 cut(s)	113, 183, 195, 225, 349, 398
Sau3AI	GATC	1 cut(s)	100
SchI	GAGTC	1 cut(s)	158
ScrFI	CCNGG	2 cut(s)	44, 73
SetI	ASST	5 cut(s)	130, 153, 256, 294, 301
SfaNI	GCATC	1 cut(s)	187
SfcI	CTRYAG	1 cut(s)	30
SmiMI	CAYNNNNRTG	6 cut(s)	113, 183, 195, 225, 349, 398
SphI	GCATGC	1 cut(s)	146
Sse9I	AATT	3 cut(s)	21, 301, 360
SsiI	CCGC	1 cut(s)	2
SspMI	CTAG	1 cut(s)	293
StyD4I	CCNGG	2 cut(s)	42, 71
TaaI	ACNGT	3 cut(s)	15, 327, 351
TaqI	TCGA	1 cut(s)	99
TasI	AATT	3 cut(s)	21, 301, 360
TatI	WGTACW	1 cut(s)	36
TspDTI	ATGAA	2 cut(s)	131, 324
XapI	RAATTY	2 cut(s)	21, 360
XceI	RCATGY	2 cut(s)	86, 146
XmnI	GAANNNNTTC	1 cut(s)	253
XspI	CTAG	1 cut(s)	293

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.