Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0001391

Physical Location & Seq

Genomic Coordinates Forward (+)

23057400 .. 23058142

Gene Structure 743 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g19740.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGGAGTCTCGTACTTACATGACTTGTGGATTGAAAGTGGATACCAAAACTGGTGGATGGCACAAGTGCTTGACGAAAATGCTGAAAAAGATCCAAGGAGCATCATACAATGTAGATGCAGAAGCAGGTATGGCATATATTTCTGGGAAAGTAGACCCCAGAAAGTTACTGAGAAGGCTAGTGAAGGCCGGGAAAGAAGCCGAAATCTGCTGGGTCAGGACGGGAGATCAATGTACCTACTATGACGGATATGGCGGCGAGGGTAATATTCAAAATGGCAATGGTTATTATGATCATTCATATAATTATATGGATGGTTATAATGGTCATTATGGACAGAGTTCATCATACTACCCACACGGCCATTATGGACACAGTTCATCGTACTATCCCCAGGCGACGCCGTATTACTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

139

Amino Acids

15.66

Weight (kDa)

8.54

Isoelectric Point (pI)

48.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001391)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51020 AT5G66370
fragaria_vesca	FvH4_3g23891 FvH4_6g53281 FvH4_6g53282
malus_domestica	MD09G1012100.v1.1 MD17G1012800.v1.1
prunus_persica	Prupe.1G586300_v2.0.a1 Prupe.3G304800_v2.0.a1 Prupe.3G304900_v2.0.a1 Prupe.4G231200_v2.0.a1 Prupe.5G226000_v2.0.a1 Prupe.5G226000_v2.0.a1 Prupe.5G226000_v2.0.a1
pyrus_communis	pycom06g19740
rosa_chinensis	RchiOBHm_Chr2g0175421 RchiOBHm_Chr2g0175431 RchiOBHm_Chr5g0042401 RchiOBHm_Chr7g0179321
rosa_laevigata	RLG00000005365 RLG00000022325 RLG00000022326 RLG00000034120 RLG00000035846
rosa_multiflora	Rmu_co8392657.1_g000001 Rmu_sc0001751.1_g000002 Rmu_sc0008980.1_g000002
rosa_roxburghii	Rroxscaffold_1G00038310 Rroxscaffold_2G00077400 Rroxscaffold_3G00274120
rosa_rugosa	Rorug02G0583800 Rorug02G0583900.1 Rorug02G0584000 Rorug02G0584100 Rorug06G0423400
rosa_samantha	Rh2AG663900 Rh2AG664000 Rh2BG674700 Rh2BG674800 Rh2CG637900 Rh2CG638000 Rh2DG688700 Rh2DG688800 Rh5AG285800 Rh5AG285900 Rh5BG290600 Rh5CG322600 Rh5DG300400 Rh7AG022700 Rh7CG023700
rosa_wichuraiana	Rw2G054410 Rw2G054420 Rw5G026530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	321
Acc36I	ACCTGC	1 cut(s)	116
AccI	GTMKAC	1 cut(s)	153
AciI	CCGC	1 cut(s)	255
AclWI	GGATC	1 cut(s)	85
AcoI	YGGCCR	1 cut(s)	361
AcyI	GRCGYC	1 cut(s)	401
AfaI	GTAC	3 cut(s)	13, 235, 386
AgsI	TTSAA	2 cut(s)	34, 272
AjnI	CCWGG	1 cut(s)	393
Alw26I	GTCTC	1 cut(s)	12
AlwI	GGATC	1 cut(s)	85
AoxI	GGCC	2 cut(s)	186, 361
AsuC2I	CCSGG	1 cut(s)	190
BccI	CCATC	2 cut(s)	51, 308
BceAI	ACGGC	2 cut(s)	376, 388
BciT130I	CCWGG	1 cut(s)	395
BciVI	GTATCC	1 cut(s)	34
BclI	TGATCA	1 cut(s)	292
BcnI	CCSGG	1 cut(s)	190
BcoDI	GTCTC	1 cut(s)	12
BfaI	CTAG	1 cut(s)	179
BfuAI	ACCTGC	1 cut(s)	116
BfuI	GTATCC	1 cut(s)	34
BisI	GCNGC	1 cut(s)	256
BlsI	GCNGC	1 cut(s)	257
Bme1390I	CCNGG	2 cut(s)	190, 395
BmrFI	CCNGG	2 cut(s)	190, 395
BmsI	GCATC	2 cut(s)	106, 110
BpuMI	CCSGG	1 cut(s)	190
BsaHI	GRCGYC	1 cut(s)	401
BsaJI	CCNNGG	2 cut(s)	94, 393
Bse1I	ACTGG	1 cut(s)	55
Bse3DI	GCAATG	1 cut(s)	286
BseBI	CCWGG	1 cut(s)	395
BseDI	CCNNGG	2 cut(s)	94, 393
BseGI	GGATG	2 cut(s)	62, 319
BseMI	GCAATG	1 cut(s)	286
BseMII	CTCAG	1 cut(s)	161
BseNI	ACTGG	1 cut(s)	55
BseYI	CCCAGC	1 cut(s)	210
BshFI	GGCC	2 cut(s)	188, 363
BsiSI	CCGG	1 cut(s)	189
BsmAI	GTCTC	1 cut(s)	12
BsnI	GGCC	2 cut(s)	188, 363
Bsp143I	GATC	3 cut(s)	90, 226, 292
BspACI	CCGC	1 cut(s)	255
BspANI	GGCC	2 cut(s)	188, 363
BspCNI	CTCAG	1 cut(s)	162
BspMI	ACCTGC	1 cut(s)	116
BspPI	GGATC	1 cut(s)	85
BsrDI	GCAATG	1 cut(s)	286
BsrI	ACTGG	1 cut(s)	55
BssECI	CCNNGG	2 cut(s)	94, 393
BssMI	GATC	3 cut(s)	90, 226, 292
BssNI	GRCGYC	1 cut(s)	401
BssT1I	CCWWGG	1 cut(s)	94
Bst2UI	CCWGG	1 cut(s)	395
Bst4CI	ACNGT	1 cut(s)	377
BstACI	GRCGYC	1 cut(s)	401
BstDEI	CTNAG	1 cut(s)	170
BstF5I	GGATG	2 cut(s)	62, 319
BstKTI	GATC	3 cut(s)	93, 229, 295
BstMAI	GTCTC	1 cut(s)	12
BstMBI	GATC	3 cut(s)	90, 226, 292
BstMWI	GCNNNNNNNGC	1 cut(s)	131
BstNI	CCWGG	1 cut(s)	395
BstSCI	CCNGG	2 cut(s)	188, 393
BstX2I	RGATCY	1 cut(s)	90
BstYI	RGATCY	1 cut(s)	90
BsuI	GTATCC	1 cut(s)	34
BsuRI	GGCC	2 cut(s)	188, 363
BtsCI	GGATG	2 cut(s)	62, 319
BveI	ACCTGC	1 cut(s)	116
CseI	GACGC	1 cut(s)	409
Csp6I	GTAC	3 cut(s)	12, 234, 385
CspCI	CAANNNNNGTGG	2 cut(s)	34, 69
CviAII	CATG	1 cut(s)	19
CviJI	RGCY	4 cut(s)	178, 188, 200, 363
CviKI_1	RGCY	4 cut(s)	178, 188, 200, 363
CviQI	GTAC	3 cut(s)	12, 234, 385
DdeI	CTNAG	1 cut(s)	170
DpnI	GATC	3 cut(s)	92, 228, 294
DpnII	GATC	3 cut(s)	90, 226, 292
EaeI	YGGCCR	1 cut(s)	361
Eco130I	CCWWGG	1 cut(s)	94
EcoRII	CCWGG	1 cut(s)	393
EcoT14I	CCWWGG	1 cut(s)	94
ErhI	CCWWGG	1 cut(s)	94
FaeI	CATG	1 cut(s)	22
FatI	CATG	1 cut(s)	18
FbaI	TGATCA	1 cut(s)	292
FblI	GTMKAC	1 cut(s)	153
Fnu4HI	GCNGC	1 cut(s)	256
FokI	GGATG	2 cut(s)	69, 326
Fsp4HI	GCNGC	1 cut(s)	256
FspBI	CTAG	1 cut(s)	179
GluI	GCNGC	1 cut(s)	256
GsaI	CCCAGC	1 cut(s)	214
HaeIII	GGCC	2 cut(s)	188, 363
HapII	CCGG	1 cut(s)	189
HgaI	GACGC	1 cut(s)	409
Hin1I	GRCGYC	1 cut(s)	401
Hin1II	CATG	1 cut(s)	22
HinfI	GANTC	1 cut(s)	5
HpaII	CCGG	1 cut(s)	189
Hpy166II	GTNNAC	1 cut(s)	154
Hpy188III	TCNNGA	1 cut(s)	217
Hpy8I	GTNNAC	1 cut(s)	154
Hpy99I	CGWCG	1 cut(s)	403
HpyAV	CCTTC	2 cut(s)	168, 178
HpyCH4III	ACNGT	1 cut(s)	377
HpyCH4V	TGCA	1 cut(s)	119
HpyF10VI	GCNNNNNNNGC	1 cut(s)	131
HpyF3I	CTNAG	1 cut(s)	170
Hsp92I	GRCGYC	1 cut(s)	401
Hsp92II	CATG	1 cut(s)	22
Ksp22I	TGATCA	1 cut(s)	292
Kzo9I	GATC	3 cut(s)	90, 226, 292
LmnI	GCTCC	1 cut(s)	98
LpnPI	CCDG	9 cut(s)	36, 111, 129, 172, 196, 202, 202, 380, 407
LweI	GCATC	2 cut(s)	106, 110
MaeI	CTAG	1 cut(s)	179
MaeIII	GTNAC	1 cut(s)	165
MalI	GATC	3 cut(s)	92, 228, 294
MboI	GATC	3 cut(s)	90, 226, 292
MflI	RGATCY	1 cut(s)	90
MluCI	AATT	1 cut(s)	304
MlyI	GAGTC	1 cut(s)	14
MnlI	CCTC	1 cut(s)	253
MspI	CCGG	1 cut(s)	189
MspR9I	CCNGG	2 cut(s)	190, 395
MvaI	CCWGG	1 cut(s)	395
MwoI	GCNNNNNNNGC	1 cut(s)	131
NciI	CCSGG	1 cut(s)	190
NdeII	GATC	3 cut(s)	90, 226, 292
NlaIII	CATG	1 cut(s)	22
PkrI	GCNGC	1 cut(s)	257
PleI	GAGTC	1 cut(s)	13
PpsI	GAGTC	1 cut(s)	13
PsiI	TTATAA	1 cut(s)	321
Psp6I	CCWGG	1 cut(s)	393
PspFI	CCCAGC	1 cut(s)	210
PspGI	CCWGG	1 cut(s)	393
PsuI	RGATCY	1 cut(s)	90
RsaI	GTAC	3 cut(s)	13, 235, 386
RsaNI	GTAC	3 cut(s)	12, 234, 385
SatI	GCNGC	1 cut(s)	256
Sau3AI	GATC	3 cut(s)	90, 226, 292
SchI	GAGTC	1 cut(s)	14
ScrFI	CCNGG	2 cut(s)	190, 395
SetI	ASST	2 cut(s)	130, 239
SfaNI	GCATC	2 cut(s)	106, 110
Sse9I	AATT	1 cut(s)	304
SsiI	CCGC	1 cut(s)	255
SspI	AATATT	1 cut(s)	268
SspMI	CTAG	1 cut(s)	179
StyD4I	CCNGG	2 cut(s)	188, 393
StyI	CCWWGG	1 cut(s)	94
TaaI	ACNGT	1 cut(s)	377
TasI	AATT	1 cut(s)	304
TauI	GCSGC	1 cut(s)	258
TspDTI	ATGAA	3 cut(s)	288, 333, 369
TspGWI	ACGGA	1 cut(s)	261
XmiI	GTMKAC	1 cut(s)	153
XspI	CTAG	1 cut(s)	179

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.