Rh5AG285900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0001391
Physical Location & Seq
Reverse (-)
38730061 .. 38731303
1243 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG285900.1

Sequence Viewer

Length: 342 bp
ATGCTGAAAAAAATCAGAGGAGCAAAGTATTCTTTAAACGTCCAAGAAGGAACGCTCCGTGTTTCTGGGAAAGTAAACCCGACGAAAGTACTGAACAAGCTAAAGAAGGCTGGGAAAGTAGCAGAGATCTTGTGGGTGAATAGTGGAGTAACTGACAGTGTCTATTTTGAAGACCCAACCTTGTATAGTAATCACTATAGTCCTTATAATAATGATTACAATTATGTGAACAATGGTTATGCAGCTGGATACCATCTTTCTTCTTCATACAGCCATCATCATCAGCTTCCTATCACCCATCATTATCCCTATGGCGGCCATGGTTATGGTGGATTTTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

113

Amino Acids

12.76

Weight (kDa)

9.32

Isoelectric Point (pI)

33.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 207
AciI CCGC 1 cut(s) 315
AcoI YGGCCR 1 cut(s) 316
AfaI GTAC 1 cut(s) 90
AfiI CCNNNNNNNGG 1 cut(s) 314
AgsI TTSAA 1 cut(s) 170
AluBI AGCT 3 cut(s) 100, 245, 286
AluI AGCT 3 cut(s) 100, 245, 286
AoxI GGCC 1 cut(s) 316
ApeKI GCWGC 1 cut(s) 242
AsuHPI GGTGA 2 cut(s) 148, 286
BbsI GAAGAC 1 cut(s) 177
BbvI GCAGC 1 cut(s) 254
BccI CCATC 3 cut(s) 261, 282, 306
BciVI GTATCC 1 cut(s) 242
BfmI CTRYAG 1 cut(s) 196
BfuI GTATCC 1 cut(s) 242
BglII AGATCT 1 cut(s) 126
BisI GCNGC 2 cut(s) 243, 316
BlsI GCNGC 2 cut(s) 244, 317
BmcAI AGTACT 1 cut(s) 90
BpiI GAAGAC 1 cut(s) 177
BsaJI CCNNGG 1 cut(s) 319
Bsc4I CCNNNNNNNGG 1 cut(s) 314
BseDI CCNNGG 1 cut(s) 319
BseLI CCNNNNNNNGG 1 cut(s) 314
BseRI GAGGAG 1 cut(s) 33
BseXI GCAGC 1 cut(s) 254
BseYI CCCAGC 1 cut(s) 110
BshFI GGCC 1 cut(s) 318
BslI CCNNNNNNNGG 1 cut(s) 314
BsnI GGCC 1 cut(s) 318
Bsp143I GATC 1 cut(s) 126
Bsp19I CCATGG 1 cut(s) 319
BspACI CCGC 1 cut(s) 315
BspANI GGCC 1 cut(s) 318
BssECI CCNNGG 1 cut(s) 319
BssMI GATC 1 cut(s) 126
BssT1I CCWWGG 1 cut(s) 319
Bst4CI ACNGT 1 cut(s) 158
BstDSI CCRYGG 1 cut(s) 319
BstKTI GATC 1 cut(s) 129
BstMBI GATC 1 cut(s) 126
BstSFI CTRYAG 1 cut(s) 196
BstV1I GCAGC 1 cut(s) 254
BstV2I GAAGAC 1 cut(s) 177
BstX2I RGATCY 1 cut(s) 126
BstXI CCANNNNNNTGG 1 cut(s) 326
BstYI RGATCY 1 cut(s) 126
BsuI GTATCC 1 cut(s) 242
BsuRI GGCC 1 cut(s) 318
BtgI CCRYGG 1 cut(s) 319
BtsIMutI CAGTG 1 cut(s) 163
Csp6I GTAC 1 cut(s) 89
CviAII CATG 1 cut(s) 320
CviJI RGCY 6 cut(s) 100, 110, 245, 273, 286, 318
CviKI_1 RGCY 6 cut(s) 100, 110, 245, 273, 286, 318
CviQI GTAC 1 cut(s) 89
DpnI GATC 1 cut(s) 128
DpnII GATC 1 cut(s) 126
DraI TTTAAA 1 cut(s) 36
EaeI YGGCCR 1 cut(s) 316
Eco130I CCWWGG 1 cut(s) 319
EcoT14I CCWWGG 1 cut(s) 319
ErhI CCWWGG 1 cut(s) 319
FaeI CATG 1 cut(s) 323
FaiI YATR 9 cut(s) 186, 198, 207, 225, 240, 268, 312, 321, 327
FatI CATG 1 cut(s) 319
Fnu4HI GCNGC 2 cut(s) 243, 316
Fsp4HI GCNGC 2 cut(s) 243, 316
GluI GCNGC 2 cut(s) 243, 316
GsaI CCCAGC 1 cut(s) 114
HaeIII GGCC 1 cut(s) 318
Hin1II CATG 1 cut(s) 323
HphI GGTGA 2 cut(s) 148, 286
Hpy166II GTNNAC 2 cut(s) 76, 229
Hpy188I TCNGA 1 cut(s) 17
Hpy8I GTNNAC 2 cut(s) 76, 229
Hpy99I CGWCG 1 cut(s) 85
HpyAV CCTTC 2 cut(s) 41, 100
HpyCH4III ACNGT 1 cut(s) 158
HpyCH4IV ACGT 1 cut(s) 39
HpyCH4V TGCA 1 cut(s) 242
HpySE526I ACGT 1 cut(s) 39
Hsp92II CATG 1 cut(s) 323
Kzo9I GATC 1 cut(s) 126
LmnI GCTCC 2 cut(s) 20, 60
LpnPI CCDG 3 cut(s) 51, 96, 231
Lsp1109I GCAGC 1 cut(s) 254
MaeII ACGT 1 cut(s) 39
MaeIII GTNAC 1 cut(s) 148
MalI GATC 1 cut(s) 128
MboI GATC 1 cut(s) 126
MboII GAAGA 3 cut(s) 182, 252, 255
MflI RGATCY 1 cut(s) 126
MluCI AATT 1 cut(s) 220
MnlI CCTC 1 cut(s) 11
MseI TTAA 1 cut(s) 35
MslI CAYNNNNRTG 1 cut(s) 324
MspA1I CMGCKG 1 cut(s) 245
NcoI CCATGG 1 cut(s) 319
NdeII GATC 1 cut(s) 126
NlaIII CATG 1 cut(s) 323
PflFI GACNNNGTC 1 cut(s) 158
PkrI GCNGC 2 cut(s) 244, 317
PsiI TTATAA 1 cut(s) 207
PspFI CCCAGC 1 cut(s) 110
PsuI RGATCY 1 cut(s) 126
PsyI GACNNNGTC 1 cut(s) 158
PvuII CAGCTG 1 cut(s) 245
RsaI GTAC 1 cut(s) 90
RsaNI GTAC 1 cut(s) 89
RseI CAYNNNNRTG 1 cut(s) 324
SaqAI TTAA 1 cut(s) 35
SatI GCNGC 2 cut(s) 243, 316
Sau3AI GATC 1 cut(s) 126
ScaI AGTACT 1 cut(s) 90
SetI ASST 5 cut(s) 42, 102, 182, 247, 288
SfcI CTRYAG 1 cut(s) 196
SmiMI CAYNNNNRTG 1 cut(s) 324
Sse9I AATT 1 cut(s) 220
SsiI CCGC 1 cut(s) 315
StyI CCWWGG 1 cut(s) 319
TaaI ACNGT 1 cut(s) 158
TaiI ACGT 1 cut(s) 42
TasI AATT 1 cut(s) 220
TatI WGTACW 1 cut(s) 88
TauI GCSGC 1 cut(s) 318
Tru1I TTAA 1 cut(s) 35
Tru9I TTAA 1 cut(s) 35
TscAI CASTG 1 cut(s) 163
TseI GCWGC 1 cut(s) 242
TspDTI ATGAA 1 cut(s) 255
TspGWI ACGGA 1 cut(s) 47
TspRI CASTG 1 cut(s) 163
Tth111I GACNNNGTC 1 cut(s) 158
XcmI CCANNNNNNNNNTGG 1 cut(s) 326
ZrmI AGTACT 1 cut(s) 90
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.