Rh5AG285800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0001391
Physical Location & Seq
Reverse (-)
38716339 .. 38729636
13298 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG285800.1

Sequence Viewer

Length: 294 bp
ATGCATAAAATTAGACGTTTCAACTTCAACGCTCTGTTTCATGCTTCCGATAATGAGAAGCGCCATGGTCACAACCTCGAGACCTTGAAGCATGAAGAGCAGAAGCCGTTGGAGCATGACGGGCAGAGTGAAAGATATTTTGGAGAGGAGGAGGAGGCCATTGGAGAGGAGGCCACGGTCCTTTGTGGGATTAAGCAAGACTCTGAGTGGGACAACAAGAGAACTGGAGCTGAATTGGGCTATCTTAATTTGCCGGCCTCCACAATTCTGACAACAGGACCTATCTTTGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

97

Amino Acids

11.15

Weight (kDa)

5.19

Isoelectric Point (pI)

62.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 4 cut(s) 22, 28, 88, 290
AjuI GAANNNNNNNTTGG 2 cut(s) 123, 155
AluBI AGCT 1 cut(s) 230
AluI AGCT 1 cut(s) 230
Alw26I GTCTC 1 cut(s) 74
Ama87I CYCGRG 1 cut(s) 77
AoxI GGCC 3 cut(s) 156, 171, 255
AspLEI GCGC 1 cut(s) 63
AspS9I GGNCC 2 cut(s) 178, 278
AvaI CYCGRG 1 cut(s) 77
AvaII GGWCC 2 cut(s) 178, 278
BceAI ACGGC 1 cut(s) 91
BcoDI GTCTC 1 cut(s) 74
BfoI RGCGCY 1 cut(s) 64
Bme18I GGWCC 2 cut(s) 178, 278
BmeT110I CYCGRG 1 cut(s) 77
BmgT120I GGNCC 2 cut(s) 178, 278
BpmI CTGGAG 1 cut(s) 246
BsaI GGTCTC 1 cut(s) 74
BsaJI CCNNGG 2 cut(s) 64, 174
Bse118I RCCGGY 1 cut(s) 253
Bse1I ACTGG 1 cut(s) 229
BseDI CCNNGG 2 cut(s) 64, 174
BseMII CTCAG 1 cut(s) 195
BseNI ACTGG 1 cut(s) 229
BseRI GAGGAG 4 cut(s) 161, 164, 167, 182
BshFI GGCC 3 cut(s) 158, 173, 257
BsiHKCI CYCGRG 1 cut(s) 77
BsiSI CCGG 1 cut(s) 254
BslFI GGGAC 1 cut(s) 224
BsmAI GTCTC 1 cut(s) 74
BsmFI GGGAC 1 cut(s) 224
BsnI GGCC 3 cut(s) 158, 173, 257
Bso31I GGTCTC 1 cut(s) 74
BsoBI CYCGRG 1 cut(s) 77
Bsp19I CCATGG 1 cut(s) 64
BspANI GGCC 3 cut(s) 158, 173, 257
BspCNI CTCAG 1 cut(s) 196
BspQI GCTCTTC 1 cut(s) 90
BspTNI GGTCTC 1 cut(s) 74
BsrFI RCCGGY 1 cut(s) 253
BsrI ACTGG 1 cut(s) 229
BssAI RCCGGY 1 cut(s) 253
BssECI CCNNGG 2 cut(s) 64, 174
BssT1I CCWWGG 1 cut(s) 64
Bst4CI ACNGT 1 cut(s) 178
Bst6I CTCTTC 1 cut(s) 90
BstC8I GCNNGC 1 cut(s) 255
BstDEI CTNAG 1 cut(s) 204
BstDSI CCRYGG 2 cut(s) 64, 174
BstH2I RGCGCY 1 cut(s) 64
BstHHI GCGC 1 cut(s) 63
BstMAI GTCTC 1 cut(s) 74
BstMWI GCNNNNNNNGC 3 cut(s) 97, 112, 121
BsuRI GGCC 3 cut(s) 158, 173, 257
BtgI CCRYGG 2 cut(s) 64, 174
Cac8I GCNNGC 1 cut(s) 255
CfoI GCGC 1 cut(s) 63
Cfr10I RCCGGY 1 cut(s) 253
Cfr13I GGNCC 2 cut(s) 178, 278
CviAII CATG 4 cut(s) 41, 65, 92, 116
CviJI RGCY 6 cut(s) 106, 158, 173, 230, 240, 257
CviKI_1 RGCY 6 cut(s) 106, 158, 173, 230, 240, 257
DdeI CTNAG 1 cut(s) 204
Eam1104I CTCTTC 1 cut(s) 90
EarI CTCTTC 1 cut(s) 90
Eco130I CCWWGG 1 cut(s) 64
Eco31I GGTCTC 1 cut(s) 74
Eco47I GGWCC 2 cut(s) 178, 278
Eco88I CYCGRG 1 cut(s) 77
EcoO109I RGGNCCY 1 cut(s) 278
EcoT14I CCWWGG 1 cut(s) 64
EcoT22I ATGCAT 1 cut(s) 6
ErhI CCWWGG 1 cut(s) 64
FaeI CATG 4 cut(s) 44, 68, 95, 119
FaiI YATR 5 cut(s) 6, 42, 66, 93, 117
FaqI GGGAC 1 cut(s) 224
FatI CATG 4 cut(s) 40, 64, 91, 115
GlaI GCGC 1 cut(s) 62
GsuI CTGGAG 1 cut(s) 246
HaeII RGCGCY 1 cut(s) 64
HaeIII GGCC 3 cut(s) 158, 173, 257
HapII CCGG 1 cut(s) 254
HhaI GCGC 1 cut(s) 63
Hin1II CATG 4 cut(s) 44, 68, 95, 119
Hin6I GCGC 1 cut(s) 61
HinP1I GCGC 1 cut(s) 61
HinfI GANTC 1 cut(s) 200
HpaII CCGG 1 cut(s) 254
Hpy188I TCNGA 3 cut(s) 49, 205, 270
Hpy188III TCNNGA 1 cut(s) 79
HpyCH4III ACNGT 1 cut(s) 178
HpyCH4IV ACGT 1 cut(s) 16
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 3 cut(s) 97, 112, 121
HpyF3I CTNAG 1 cut(s) 204
HpySE526I ACGT 1 cut(s) 16
Hsp92II CATG 4 cut(s) 44, 68, 95, 119
HspAI GCGC 1 cut(s) 61
KroI GCCGGC 1 cut(s) 253
KroNI GCCGGC 1 cut(s) 255
LguI GCTCTTC 1 cut(s) 90
LmnI GCTCC 2 cut(s) 112, 227
LpnPI CCDG 3 cut(s) 210, 261, 267
MaeII ACGT 1 cut(s) 16
MaeIII GTNAC 1 cut(s) 68
MboII GAAGA 1 cut(s) 107
MluCI AATT 4 cut(s) 9, 233, 247, 264
MlyI GAGTC 1 cut(s) 194
MmeI TCCRAC 1 cut(s) 90
MnlI CCTC 8 cut(s) 86, 139, 142, 145, 148, 160, 163, 268
Mph1103I ATGCAT 1 cut(s) 6
MroNI GCCGGC 1 cut(s) 253
MseI TTAA 2 cut(s) 192, 246
MspI CCGG 1 cut(s) 254
MwoI GCNNNNNNNGC 3 cut(s) 97, 112, 121
NaeI GCCGGC 1 cut(s) 255
NcoI CCATGG 1 cut(s) 64
NgoMIV GCCGGC 1 cut(s) 253
NlaIII CATG 4 cut(s) 44, 68, 95, 119
NmuCI GTSAC 1 cut(s) 68
NsiI ATGCAT 1 cut(s) 6
PaeR7I CTCGAG 1 cut(s) 77
PciSI GCTCTTC 1 cut(s) 90
PdiI GCCGGC 1 cut(s) 255
PleI GAGTC 1 cut(s) 194
PpsI GAGTC 1 cut(s) 194
PpuMI RGGWCCY 1 cut(s) 278
Psp5II RGGWCCY 1 cut(s) 278
PspPI GGNCC 2 cut(s) 178, 278
PspPPI RGGWCCY 1 cut(s) 278
SapI GCTCTTC 1 cut(s) 90
SaqAI TTAA 2 cut(s) 192, 246
Sau96I GGNCC 2 cut(s) 178, 278
SchI GAGTC 1 cut(s) 194
SetI ASST 5 cut(s) 19, 78, 86, 232, 283
Sfr274I CTCGAG 1 cut(s) 77
SinI GGWCC 2 cut(s) 178, 278
SlaI CTCGAG 1 cut(s) 77
SmlI CTYRAG 1 cut(s) 77
SmoI CTYRAG 1 cut(s) 77
Sse9I AATT 4 cut(s) 9, 233, 247, 264
StyI CCWWGG 1 cut(s) 64
TaaI ACNGT 1 cut(s) 178
TaiI ACGT 1 cut(s) 19
TaqI TCGA 1 cut(s) 78
TasI AATT 4 cut(s) 9, 233, 247, 264
Tru1I TTAA 2 cut(s) 192, 246
Tru9I TTAA 2 cut(s) 192, 246
TseFI GTSAC 1 cut(s) 68
Tsp45I GTSAC 1 cut(s) 68
TspDTI ATGAA 2 cut(s) 29, 108
VpaK11BI GGWCC 2 cut(s) 178, 278
XhoI CTCGAG 1 cut(s) 77
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.