Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0001391

Physical Location & Seq

Genomic Coordinates Reverse (-)

39096379 .. 39097125

Gene Structure 747 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g53281.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGGGGGAGACCGATCATGGCTATACGCGTTGTGAACTGAAATTGGATACCAGTTCCAAGGGATGGCATATGACCATGATCAAAGTCTTGAATAGTATCAAGGGAGTGAAATACTACATTGATGCACAAGCTGGAATCGCATATGTTGCTGGTACGATCCACCCAGACACCGTGCTGAGAAGGTTAGCAAAATCTGGAAAGCATGCAACGCTGCTTAAGGCTGATTCGGGAGGATATCGTCAGCAGGTTTTGAAGGACCAGAAAAGTACTAGTAGTACTAGCTATGGTTATGGTTATGGCCCTAACCAGTTGAAAACTAGTAGTAGCAGCTCTTATGATTATGGTTCTAACTATAACAATTATGGAGGGGATTCTTCTTATGGTCATCAACTTCTCAATAGGAGCTATGACCAAATAGAGAATCAGTCGGCTATGGTGAGCAACCGATACTATGATGCAGACACCCAATGCACCATTATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

161

Amino Acids

17.76

Weight (kDa)

8.72

Isoelectric Point (pI)

26.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001391)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51020 AT5G66370
fragaria_vesca	FvH4_3g23891 FvH4_6g53281 FvH4_6g53282
malus_domestica	MD09G1012100.v1.1 MD17G1012800.v1.1
prunus_persica	Prupe.1G586300_v2.0.a1 Prupe.3G304800_v2.0.a1 Prupe.3G304900_v2.0.a1 Prupe.4G231200_v2.0.a1 Prupe.5G226000_v2.0.a1 Prupe.5G226000_v2.0.a1 Prupe.5G226000_v2.0.a1
pyrus_communis	pycom06g19740
rosa_chinensis	RchiOBHm_Chr2g0175421 RchiOBHm_Chr2g0175431 RchiOBHm_Chr5g0042401 RchiOBHm_Chr7g0179321
rosa_laevigata	RLG00000005365 RLG00000022325 RLG00000022326 RLG00000034120 RLG00000035846
rosa_multiflora	Rmu_co8392657.1_g000001 Rmu_sc0001751.1_g000002 Rmu_sc0008980.1_g000002
rosa_roxburghii	Rroxscaffold_1G00038310 Rroxscaffold_2G00077400 Rroxscaffold_3G00274120
rosa_rugosa	Rorug02G0583800 Rorug02G0583900.1 Rorug02G0584000 Rorug02G0584100 Rorug06G0423400
rosa_samantha	Rh2AG663900 Rh2AG664000 Rh2BG674700 Rh2BG674800 Rh2CG637900 Rh2CG638000 Rh2DG688700 Rh2DG688800 Rh5AG285800 Rh5AG285900 Rh5BG290600 Rh5CG322600 Rh5DG300400 Rh7AG022700 Rh7CG023700
rosa_wichuraiana	Rw2G054410 Rw2G054420 Rw5G026530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	235
AccB7I	CCANNNNNTGG	1 cut(s)	63
AccII	CGCG	1 cut(s)	28
AclWI	GGATC	1 cut(s)	151
AfaI	GTAC	3 cut(s)	154, 268, 277
AfiI	CCNNNNNNNGG	1 cut(s)	63
AflII	CTTAAG	1 cut(s)	215
AflIII	ACRYGT	1 cut(s)	26
AgsI	TTSAA	3 cut(s)	91, 253, 313
AhlI	ACTAGT	2 cut(s)	269, 317
AluBI	AGCT	4 cut(s)	131, 282, 330, 405
AluI	AGCT	4 cut(s)	131, 282, 330, 405
Alw26I	GTCTC	1 cut(s)	2
AlwI	GGATC	1 cut(s)	151
AoxI	GGCC	1 cut(s)	298
ApeKI	GCWGC	2 cut(s)	211, 327
AspS9I	GGNCC	2 cut(s)	256, 299
AsuHPI	GGTGA	1 cut(s)	448
AvaII	GGWCC	1 cut(s)	256
BbvI	GCAGC	2 cut(s)	198, 339
BccI	CCATC	1 cut(s)	57
BciVI	GTATCC	1 cut(s)	40
BclI	TGATCA	1 cut(s)	78
BcoDI	GTCTC	1 cut(s)	2
BcuI	ACTAGT	2 cut(s)	269, 317
BfaI	CTAG	3 cut(s)	270, 279, 318
BfrI	CTTAAG	1 cut(s)	215
BfuAI	ACCTGC	1 cut(s)	235
BfuI	GTATCC	1 cut(s)	40
BisI	GCNGC	2 cut(s)	212, 328
BlsI	GCNGC	2 cut(s)	213, 329
BmcAI	AGTACT	2 cut(s)	268, 277
Bme18I	GGWCC	1 cut(s)	256
BmgT120I	GGNCC	2 cut(s)	256, 299
BmsI	GCATC	2 cut(s)	112, 445
BsaI	GGTCTC	1 cut(s)	2
BsaJI	CCNNGG	1 cut(s)	57
Bsc4I	CCNNNNNNNGG	1 cut(s)	63
Bse1I	ACTGG	2 cut(s)	51, 307
BseDI	CCNNGG	1 cut(s)	57
BseGI	GGATG	1 cut(s)	68
BseLI	CCNNNNNNNGG	1 cut(s)	63
BseMII	CTCAG	1 cut(s)	167
BseNI	ACTGG	2 cut(s)	51, 307
BseXI	GCAGC	2 cut(s)	198, 339
Bsh1236I	CGCG	1 cut(s)	28
BshFI	GGCC	1 cut(s)	300
BslI	CCNNNNNNNGG	1 cut(s)	63
BsmAI	GTCTC	1 cut(s)	2
BsnI	GGCC	1 cut(s)	300
Bso31I	GGTCTC	1 cut(s)	2
Bsp143I	GATC	3 cut(s)	13, 78, 156
BspANI	GGCC	1 cut(s)	300
BspCNI	CTCAG	1 cut(s)	168
BspFNI	CGCG	1 cut(s)	28
BspMI	ACCTGC	1 cut(s)	235
BspPI	GGATC	1 cut(s)	151
BspTI	CTTAAG	1 cut(s)	215
BspTNI	GGTCTC	1 cut(s)	2
BsrI	ACTGG	2 cut(s)	51, 307
BssECI	CCNNGG	1 cut(s)	57
BssMI	GATC	3 cut(s)	13, 78, 156
BssT1I	CCWWGG	1 cut(s)	57
Bst4CI	ACNGT	1 cut(s)	172
BstAFI	CTTAAG	1 cut(s)	215
BstAPI	GCANNNNNTGC	1 cut(s)	146
BstC8I	GCNNGC	1 cut(s)	204
BstDEI	CTNAG	1 cut(s)	176
BstF5I	GGATG	1 cut(s)	68
BstFNI	CGCG	1 cut(s)	28
BstKTI	GATC	3 cut(s)	16, 81, 159
BstMAI	GTCTC	1 cut(s)	2
BstMBI	GATC	3 cut(s)	13, 78, 156
BstMWI	GCNNNNNNNGC	3 cut(s)	137, 146, 208
BstNSI	RCATGY	1 cut(s)	206
BstUI	CGCG	1 cut(s)	28
BstV1I	GCAGC	2 cut(s)	198, 339
BsuI	GTATCC	1 cut(s)	40
BsuRI	GGCC	1 cut(s)	300
BtsCI	GGATG	1 cut(s)	68
BveI	ACCTGC	1 cut(s)	235
Cac8I	GCNNGC	1 cut(s)	204
Cfr13I	GGNCC	2 cut(s)	256, 299
Csp6I	GTAC	3 cut(s)	153, 267, 276
CviAII	CATG	3 cut(s)	17, 76, 203
CviJI	RGCY	8 cut(s)	21, 131, 221, 282, 300, 330, 405, 431
CviKI_1	RGCY	8 cut(s)	21, 131, 221, 282, 300, 330, 405, 431
CviQI	GTAC	3 cut(s)	153, 267, 276
DdeI	CTNAG	1 cut(s)	176
DpnI	GATC	3 cut(s)	15, 80, 158
DpnII	GATC	3 cut(s)	13, 78, 156
Eco130I	CCWWGG	1 cut(s)	57
Eco31I	GGTCTC	1 cut(s)	2
Eco32I	GATATC	1 cut(s)	236
Eco47I	GGWCC	1 cut(s)	256
EcoRV	GATATC	1 cut(s)	236
EcoT14I	CCWWGG	1 cut(s)	57
ErhI	CCWWGG	1 cut(s)	57
FaeI	CATG	3 cut(s)	20, 79, 206
FatI	CATG	3 cut(s)	16, 75, 202
FauNDI	CATATG	2 cut(s)	69, 142
FbaI	TGATCA	1 cut(s)	78
Fnu4HI	GCNGC	2 cut(s)	212, 328
FokI	GGATG	1 cut(s)	75
Fsp4HI	GCNGC	2 cut(s)	212, 328
FspBI	CTAG	3 cut(s)	270, 279, 318
GluI	GCNGC	2 cut(s)	212, 328
HaeIII	GGCC	1 cut(s)	300
Hin1II	CATG	3 cut(s)	20, 79, 206
HinfI	GANTC	4 cut(s)	135, 224, 371, 421
HphI	GGTGA	1 cut(s)	448
Hpy166II	GTNNAC	1 cut(s)	35
Hpy188III	TCNNGA	3 cut(s)	88, 195, 228
Hpy8I	GTNNAC	1 cut(s)	35
HpyAV	CCTTC	2 cut(s)	174, 247
HpyCH4III	ACNGT	1 cut(s)	172
HpyCH4V	TGCA	4 cut(s)	125, 206, 458, 471
HpyF10VI	GCNNNNNNNGC	3 cut(s)	137, 146, 208
HpyF3I	CTNAG	1 cut(s)	176
Hsp92II	CATG	3 cut(s)	20, 79, 206
Ksp22I	TGATCA	1 cut(s)	78
Kzo9I	GATC	3 cut(s)	13, 78, 156
LmnI	GCTCC	1 cut(s)	402
LpnPI	CCDG	8 cut(s)	64, 117, 135, 177, 180, 230, 272, 320
Lsp1109I	GCAGC	2 cut(s)	198, 339
LweI	GCATC	2 cut(s)	112, 445
MaeI	CTAG	3 cut(s)	270, 279, 318
MalI	GATC	3 cut(s)	15, 80, 158
MboI	GATC	3 cut(s)	13, 78, 156
MboII	GAAGA	1 cut(s)	366
MluCI	AATT	2 cut(s)	41, 358
MluI	ACGCGT	1 cut(s)	26
MnlI	CCTC	2 cut(s)	224, 359
MseI	TTAA	1 cut(s)	216
MslI	CAYNNNNRTG	1 cut(s)	476
MspCI	CTTAAG	1 cut(s)	215
MvnI	CGCG	1 cut(s)	28
MwoI	GCNNNNNNNGC	3 cut(s)	137, 146, 208
NdeI	CATATG	2 cut(s)	69, 142
NdeII	GATC	3 cut(s)	13, 78, 156
NlaIII	CATG	3 cut(s)	20, 79, 206
NspI	RCATGY	1 cut(s)	206
PaeI	GCATGC	1 cut(s)	206
PfeI	GAWTC	4 cut(s)	135, 224, 371, 421
PflMI	CCANNNNNTGG	1 cut(s)	63
PkrI	GCNGC	2 cut(s)	213, 329
PspPI	GGNCC	2 cut(s)	256, 299
RsaI	GTAC	3 cut(s)	154, 268, 277
RsaNI	GTAC	3 cut(s)	153, 267, 276
RseI	CAYNNNNRTG	1 cut(s)	476
SaqAI	TTAA	1 cut(s)	216
SatI	GCNGC	2 cut(s)	212, 328
Sau3AI	GATC	3 cut(s)	13, 78, 156
Sau96I	GGNCC	2 cut(s)	256, 299
ScaI	AGTACT	2 cut(s)	268, 277
SetI	ASST	6 cut(s)	133, 185, 249, 284, 332, 407
SfaNI	GCATC	2 cut(s)	112, 445
SinI	GGWCC	1 cut(s)	256
SmiMI	CAYNNNNRTG	1 cut(s)	476
SmlI	CTYRAG	1 cut(s)	215
SmoI	CTYRAG	1 cut(s)	215
SpeI	ACTAGT	2 cut(s)	269, 317
SphI	GCATGC	1 cut(s)	206
Sse9I	AATT	2 cut(s)	41, 358
SspMI	CTAG	3 cut(s)	270, 279, 318
StyI	CCWWGG	1 cut(s)	57
TaaI	ACNGT	1 cut(s)	172
TaqII	GACCGA	1 cut(s)	26
TasI	AATT	2 cut(s)	41, 358
TatI	WGTACW	2 cut(s)	266, 275
TfiI	GAWTC	4 cut(s)	135, 224, 371, 421
Tru1I	TTAA	1 cut(s)	216
Tru9I	TTAA	1 cut(s)	216
TseI	GCWGC	2 cut(s)	211, 327
Van91I	CCANNNNNTGG	1 cut(s)	63
Vha464I	CTTAAG	1 cut(s)	215
VpaK11BI	GGWCC	1 cut(s)	256
XceI	RCATGY	1 cut(s)	206
XspI	CTAG	3 cut(s)	270, 279, 318
ZrmI	AGTACT	2 cut(s)	268, 277

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.