Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0001391

Physical Location & Seq

Genomic Coordinates Forward (+)

790626 .. 791622

Gene Structure 997 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1012100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGGCTGAAACAACCGATACTGGTTTCATGAGTTGTGAGTTGAAACTGGATACGGGTGCCCCCGGATGGCATAAGACCATGACCAAAGTTTTGAGCAAAATCAAGGTGTCTTACACCATCGATACACAAGCCGGAATTGCTTATGTTTCGGGAACAATTGAAGCGGACATGCTTCTCAAGTTATTAGCAAAATCGGGGAAGCATGCAGAGCTGCTCAGAGTTGATTCAGGATACAAGCATCAGTTCTACGAAGCCAAACCTGTTGCTAATTACAGAACTGGACAAGGCTATGGGAACTATTACAATAACAATCATCATTACGGATATTATGGTCACAATGGAAGCTATGGAACAACAATTCCTTATCACCATCATTCTCAGTACTACCCTAGTTACCATGAGACACGGGCAACCCCGCCGGCGCTGAGGTTTCCGCAGCCGCCTCCTCCAATGCAGGTCCATCCATTTTATGATCCGGACACCCAGTGCACTATTATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

167

Amino Acids

18.79

Weight (kDa)

7.81

Isoelectric Point (pI)

30.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001391)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51020 AT5G66370
fragaria_vesca	FvH4_3g23891 FvH4_6g53281 FvH4_6g53282
malus_domestica	MD09G1012100.v1.1 MD17G1012800.v1.1
prunus_persica	Prupe.1G586300_v2.0.a1 Prupe.3G304800_v2.0.a1 Prupe.3G304900_v2.0.a1 Prupe.4G231200_v2.0.a1 Prupe.5G226000_v2.0.a1 Prupe.5G226000_v2.0.a1 Prupe.5G226000_v2.0.a1
pyrus_communis	pycom06g19740
rosa_chinensis	RchiOBHm_Chr2g0175421 RchiOBHm_Chr2g0175431 RchiOBHm_Chr5g0042401 RchiOBHm_Chr7g0179321
rosa_laevigata	RLG00000005365 RLG00000022325 RLG00000022326 RLG00000034120 RLG00000035846
rosa_multiflora	Rmu_co8392657.1_g000001 Rmu_sc0001751.1_g000002 Rmu_sc0008980.1_g000002
rosa_roxburghii	Rroxscaffold_1G00038310 Rroxscaffold_2G00077400 Rroxscaffold_3G00274120
rosa_rugosa	Rorug02G0583800 Rorug02G0583900.1 Rorug02G0584000 Rorug02G0584100 Rorug06G0423400
rosa_samantha	Rh2AG663900 Rh2AG664000 Rh2BG674700 Rh2BG674800 Rh2CG637900 Rh2CG638000 Rh2DG688700 Rh2DG688800 Rh5AG285800 Rh5AG285900 Rh5BG290600 Rh5CG322600 Rh5DG300400 Rh7AG022700 Rh7CG023700
rosa_wichuraiana	Rw2G054410 Rw2G054420 Rw5G026530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	445
AccB1I	GGYRCC	1 cut(s)	56
AccIII	TCCGGA	1 cut(s)	475
AciI	CCGC	4 cut(s)	164, 416, 434, 440
AclWI	GGATC	1 cut(s)	467
AdeI	CACNNNGTG	1 cut(s)	486
AfaI	GTAC	1 cut(s)	383
AfiI	CCNNNNNNNGG	1 cut(s)	66
AgsI	TTSAA	2 cut(s)	43, 161
AloI	GAACNNNNNNTCC	2 cut(s)	343, 375
AluBI	AGCT	2 cut(s)	211, 345
AluI	AGCT	2 cut(s)	211, 345
Alw21I	GWGCWC	1 cut(s)	491
Alw26I	GTCTC	1 cut(s)	395
Alw44I	GTGCAC	1 cut(s)	487
AlwI	GGATC	1 cut(s)	467
Aor13HI	TCCGGA	1 cut(s)	475
ApaLI	GTGCAC	1 cut(s)	487
ApeKI	GCWGC	2 cut(s)	211, 436
ArsI	GACNNNNNNTTYG	2 cut(s)	73, 105
AspLEI	GCGC	1 cut(s)	424
AspS9I	GGNCC	1 cut(s)	457
AsuC2I	CCSGG	1 cut(s)	63
AsuHPI	GGTGA	1 cut(s)	359
AvaII	GGWCC	1 cut(s)	457
BaeGI	GKGCMC	2 cut(s)	61, 491
BanI	GGYRCC	1 cut(s)	56
Bbv12I	GWGCWC	1 cut(s)	491
BbvCI	CCTCAGC	1 cut(s)	425
BbvI	GCAGC	2 cut(s)	198, 448
BccI	CCATC	4 cut(s)	60, 125, 378, 468
BciVI	GTATCC	2 cut(s)	43, 224
BcnI	CCSGG	1 cut(s)	63
BcoDI	GTCTC	1 cut(s)	395
BfaI	CTAG	1 cut(s)	390
BfoI	RGCGCY	1 cut(s)	425
BfuAI	ACCTGC	1 cut(s)	445
BfuI	GTATCC	2 cut(s)	43, 224
BisI	GCNGC	3 cut(s)	212, 437, 440
BlsI	GCNGC	3 cut(s)	213, 438, 441
BmcAI	AGTACT	1 cut(s)	383
Bme1390I	CCNGG	1 cut(s)	63
Bme18I	GGWCC	1 cut(s)	457
BmgT120I	GGNCC	1 cut(s)	457
BmiI	GGNNCC	1 cut(s)	58
BmrFI	CCNGG	1 cut(s)	63
BmrI	ACTGGG	1 cut(s)	478
BmsI	GCATC	1 cut(s)	247
BmuI	ACTGGG	1 cut(s)	478
Bpu10I	CCTNAGC	1 cut(s)	425
BpuEI	CTTGAG	1 cut(s)	161
BpuMI	CCSGG	1 cut(s)	63
Bsa29I	ATCGAT	1 cut(s)	120
BsaJI	CCNNGG	1 cut(s)	61
BsaWI	WCCGGW	1 cut(s)	475
Bsc4I	CCNNNNNNNGG	1 cut(s)	66
Bse118I	RCCGGY	1 cut(s)	418
Bse1I	ACTGG	4 cut(s)	25, 51, 283, 484
BseAI	TCCGGA	1 cut(s)	475
BseCI	ATCGAT	1 cut(s)	120
BseDI	CCNNGG	1 cut(s)	61
BseGI	GGATG	2 cut(s)	71, 460
BseLI	CCNNNNNNNGG	1 cut(s)	66
BseMII	CTCAG	3 cut(s)	229, 392, 416
BseNI	ACTGG	4 cut(s)	25, 51, 283, 484
BseRI	GAGGAG	1 cut(s)	435
BseSI	GKGCMC	2 cut(s)	61, 491
BseXI	GCAGC	2 cut(s)	198, 448
BshNI	GGYRCC	1 cut(s)	56
BshVI	ATCGAT	1 cut(s)	120
BsiHKAI	GWGCWC	1 cut(s)	491
BsiSI	CCGG	4 cut(s)	63, 132, 419, 476
BslI	CCNNNNNNNGG	1 cut(s)	66
BsmAI	GTCTC	1 cut(s)	395
Bsp1286I	GDGCHC	2 cut(s)	61, 491
Bsp13I	TCCGGA	1 cut(s)	475
Bsp143I	GATC	1 cut(s)	472
BspACI	CCGC	4 cut(s)	164, 416, 434, 440
BspCNI	CTCAG	3 cut(s)	228, 391, 417
BspDI	ATCGAT	1 cut(s)	120
BspEI	TCCGGA	1 cut(s)	475
BspHI	TCATGA	1 cut(s)	27
BspLI	GGNNCC	1 cut(s)	58
BspMI	ACCTGC	1 cut(s)	445
BspPI	GGATC	1 cut(s)	467
BspT107I	GGYRCC	1 cut(s)	56
BsrFI	RCCGGY	1 cut(s)	418
BsrI	ACTGG	4 cut(s)	25, 51, 283, 484
BssAI	RCCGGY	1 cut(s)	418
BssECI	CCNNGG	1 cut(s)	61
BssMI	GATC	1 cut(s)	472
BstC8I	GCNNGC	2 cut(s)	204, 420
BstDEI	CTNAG	3 cut(s)	215, 378, 425
BstF5I	GGATG	2 cut(s)	71, 460
BstH2I	RGCGCY	1 cut(s)	425
BstHHI	GCGC	1 cut(s)	424
BstKTI	GATC	1 cut(s)	475
BstMAI	GTCTC	1 cut(s)	395
BstMBI	GATC	1 cut(s)	472
BstMWI	GCNNNNNNNGC	2 cut(s)	137, 208
BstNSI	RCATGY	2 cut(s)	172, 206
BstSCI	CCNGG	1 cut(s)	61
BstSLI	GKGCMC	2 cut(s)	61, 491
BstV1I	GCAGC	2 cut(s)	198, 448
Bsu15I	ATCGAT	1 cut(s)	120
BsuI	GTATCC	2 cut(s)	43, 224
BsuTUI	ATCGAT	1 cut(s)	120
BtsCI	GGATG	2 cut(s)	71, 460
BtsIMutI	CAGTG	1 cut(s)	491
BveI	ACCTGC	1 cut(s)	445
Cac8I	GCNNGC	2 cut(s)	204, 420
CciI	TCATGA	1 cut(s)	27
CfoI	GCGC	1 cut(s)	424
Cfr10I	RCCGGY	1 cut(s)	418
Cfr13I	GGNCC	1 cut(s)	457
ClaI	ATCGAT	1 cut(s)	120
Csp6I	GTAC	1 cut(s)	382
CviAII	CATG	5 cut(s)	28, 79, 169, 203, 398
CviJI	RGCY	7 cut(s)	5, 131, 211, 254, 288, 345, 439
CviKI_1	RGCY	7 cut(s)	5, 131, 211, 254, 288, 345, 439
CviQI	GTAC	1 cut(s)	382
DdeI	CTNAG	3 cut(s)	215, 378, 425
DpnI	GATC	1 cut(s)	474
DpnII	GATC	1 cut(s)	472
DraIII	CACNNNGTG	1 cut(s)	486
Eco47I	GGWCC	1 cut(s)	457
FaeI	CATG	5 cut(s)	31, 82, 172, 206, 401
FatI	CATG	5 cut(s)	27, 78, 168, 202, 397
FauI	CCCGC	1 cut(s)	423
Fnu4HI	GCNGC	3 cut(s)	212, 437, 440
FokI	GGATG	2 cut(s)	78, 447
Fsp4HI	GCNGC	3 cut(s)	212, 437, 440
FspBI	CTAG	1 cut(s)	390
GlaI	GCGC	1 cut(s)	423
GluI	GCNGC	3 cut(s)	212, 437, 440
HaeII	RGCGCY	1 cut(s)	425
HapII	CCGG	4 cut(s)	63, 132, 419, 476
HhaI	GCGC	1 cut(s)	424
Hin1II	CATG	5 cut(s)	31, 82, 172, 206, 401
Hin6I	GCGC	1 cut(s)	422
HinP1I	GCGC	1 cut(s)	422
HinfI	GANTC	1 cut(s)	224
HpaII	CCGG	4 cut(s)	63, 132, 419, 476
HphI	GGTGA	1 cut(s)	359
Hpy166II	GTNNAC	1 cut(s)	489
Hpy188I	TCNGA	1 cut(s)	218
Hpy188III	TCNNGA	4 cut(s)	28, 150, 228, 476
Hpy8I	GTNNAC	1 cut(s)	489
HpyCH4V	TGCA	3 cut(s)	206, 454, 489
HpyF10VI	GCNNNNNNNGC	2 cut(s)	137, 208
HpyF3I	CTNAG	3 cut(s)	215, 378, 425
Hsp92II	CATG	5 cut(s)	31, 82, 172, 206, 401
HspAI	GCGC	1 cut(s)	422
Kpn2I	TCCGGA	1 cut(s)	475
KroI	GCCGGC	1 cut(s)	418
KroNI	GCCGGC	1 cut(s)	420
Kzo9I	GATC	1 cut(s)	472
Lsp1109I	GCAGC	2 cut(s)	198, 448
LweI	GCATC	1 cut(s)	247
MaeI	CTAG	1 cut(s)	390
MaeIII	GTNAC	2 cut(s)	332, 392
MalI	GATC	1 cut(s)	474
MboI	GATC	1 cut(s)	472
MfeI	CAATTG	1 cut(s)	156
MhlI	GDGCHC	2 cut(s)	61, 491
MluCI	AATT	4 cut(s)	135, 156, 268, 357
MnlI	CCTC	3 cut(s)	420, 453, 456
MreI	CGCCGGCG	1 cut(s)	418
MroI	TCCGGA	1 cut(s)	475
MroNI	GCCGGC	1 cut(s)	418
MslI	CAYNNNNRTG	1 cut(s)	494
MspI	CCGG	4 cut(s)	63, 132, 419, 476
MspR9I	CCNGG	1 cut(s)	63
MunI	CAATTG	1 cut(s)	156
MwoI	GCNNNNNNNGC	2 cut(s)	137, 208
NaeI	GCCGGC	1 cut(s)	420
NciI	CCSGG	1 cut(s)	63
NdeII	GATC	1 cut(s)	472
NgoMIV	GCCGGC	1 cut(s)	418
NlaIII	CATG	5 cut(s)	31, 82, 172, 206, 401
NlaIV	GGNNCC	1 cut(s)	58
NmuCI	GTSAC	1 cut(s)	332
NspI	RCATGY	2 cut(s)	172, 206
PaeI	GCATGC	1 cut(s)	206
PagI	TCATGA	1 cut(s)	27
PdiI	GCCGGC	1 cut(s)	420
PfeI	GAWTC	1 cut(s)	224
PkrI	GCNGC	3 cut(s)	213, 438, 441
PspN4I	GGNNCC	1 cut(s)	58
PspPI	GGNCC	1 cut(s)	457
RsaI	GTAC	1 cut(s)	383
RsaNI	GTAC	1 cut(s)	382
RseI	CAYNNNNRTG	1 cut(s)	494
SatI	GCNGC	3 cut(s)	212, 437, 440
Sau3AI	GATC	1 cut(s)	472
Sau96I	GGNCC	1 cut(s)	457
ScaI	AGTACT	1 cut(s)	383
ScrFI	CCNGG	1 cut(s)	63
SduI	GDGCHC	2 cut(s)	61, 491
SetI	ASST	6 cut(s)	108, 213, 262, 347, 431, 459
SfaNI	GCATC	1 cut(s)	247
SgrAI	CRCCGGYG	1 cut(s)	418
SinI	GGWCC	1 cut(s)	457
SmiMI	CAYNNNNRTG	1 cut(s)	494
SmlI	CTYRAG	1 cut(s)	176
SmoI	CTYRAG	1 cut(s)	176
SphI	GCATGC	1 cut(s)	206
Sse9I	AATT	4 cut(s)	135, 156, 268, 357
SsiI	CCGC	4 cut(s)	164, 416, 434, 440
SspMI	CTAG	1 cut(s)	390
StyD4I	CCNGG	1 cut(s)	61
TaqI	TCGA	1 cut(s)	120
TasI	AATT	4 cut(s)	135, 156, 268, 357
TatI	WGTACW	1 cut(s)	381
TauI	GCSGC	1 cut(s)	442
TfiI	GAWTC	1 cut(s)	224
TscAI	CASTG	1 cut(s)	491
TseFI	GTSAC	1 cut(s)	332
TseI	GCWGC	2 cut(s)	211, 436
Tsp45I	GTSAC	1 cut(s)	332
TspDTI	ATGAA	1 cut(s)	16
TspGWI	ACGGA	1 cut(s)	336
TspRI	CASTG	1 cut(s)	491
VneI	GTGCAC	1 cut(s)	487
VpaK11BI	GGWCC	1 cut(s)	457
XceI	RCATGY	2 cut(s)	172, 206
XspI	CTAG	1 cut(s)	390
ZrmI	AGTACT	1 cut(s)	383

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.