Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0001391

Physical Location & Seq

Genomic Coordinates Reverse (-)

90653984 .. 90654757

Gene Structure 774 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG688800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGGCGGCCAAGGATGATACAAAGGCAAAGATCCCCAGTAATGAAGTGACTTGTCAATTAAAGCTGGATAATAGCGCCAAGGGATGGCACAAGACCATTTCCAAAGTTTTGAAAACTATCGAGGGAGTATCTTACAGCATTGATATGGAAAATGGAAGCGTAACTGTTACGGGTTGGATTGACCCAGAAACCCTTATGGCTCGATTAGCGAAATCTGGGAAGAAAATAGAGCTGGTTAGGGTTGATACAGGAGTTCTTCGTGAGGCGCGGATAAAAAAACTGAAGCAGCAACAGCAGTTACAACAACAATATTATTATGGACATGGATACCCTTTTGGTTATGTTAATGGTTATTATCCTCAGCAATATGGATACTATAATCAGAGTGGAGCTGGATACCCTTATGGAACAACACCAGATTACTATCGCAATCATCATCAGCTCTACCCTAATTATTATCAGCAGCAGCCAGTTAGGCCCACTGCGCCACATGCGCCACCTGCACCACGATTAGGTTTTCCACAGCCACCACCGCCGTTGGAGATTCACCCGTTTTACGATCCAGAGACACAATGCACGATTATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

195

Amino Acids

22.26

Weight (kDa)

9.0

Isoelectric Point (pI)

46.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMA	PF00403	31 - 75	6.4e-06	Heavy-metal-associated domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001391)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51020 AT5G66370
fragaria_vesca	FvH4_3g23891 FvH4_6g53281 FvH4_6g53282
malus_domestica	MD09G1012100.v1.1 MD17G1012800.v1.1
prunus_persica	Prupe.1G586300_v2.0.a1 Prupe.3G304800_v2.0.a1 Prupe.3G304900_v2.0.a1 Prupe.4G231200_v2.0.a1 Prupe.5G226000_v2.0.a1 Prupe.5G226000_v2.0.a1 Prupe.5G226000_v2.0.a1
pyrus_communis	pycom06g19740
rosa_chinensis	RchiOBHm_Chr2g0175421 RchiOBHm_Chr2g0175431 RchiOBHm_Chr5g0042401 RchiOBHm_Chr7g0179321
rosa_laevigata	RLG00000005365 RLG00000022325 RLG00000022326 RLG00000034120 RLG00000035846
rosa_multiflora	Rmu_co8392657.1_g000001 Rmu_sc0001751.1_g000002 Rmu_sc0008980.1_g000002
rosa_roxburghii	Rroxscaffold_1G00038310 Rroxscaffold_2G00077400 Rroxscaffold_3G00274120
rosa_rugosa	Rorug02G0583800 Rorug02G0583900.1 Rorug02G0584000 Rorug02G0584100 Rorug06G0423400
rosa_samantha	Rh2AG663900 Rh2AG664000 Rh2BG674700 Rh2BG674800 Rh2CG637900 Rh2CG638000 Rh2DG688700 Rh2DG688800 Rh5AG285800 Rh5AG285900 Rh5BG290600 Rh5CG322600 Rh5DG300400 Rh7AG022700 Rh7CG023700
rosa_wichuraiana	Rw2G054410 Rw2G054420 Rw5G026530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	508
Acc36I	ACCTGC	1 cut(s)	508
AccB7I	CCANNNNNTGG	1 cut(s)	84
AccII	CGCG	1 cut(s)	268
AciI	CCGC	3 cut(s)	5, 268, 533
AclWI	GGATC	2 cut(s)	25, 554
AcoI	YGGCCR	1 cut(s)	6
AcuI	CTGAAG	1 cut(s)	302
AfiI	CCNNNNNNNGG	2 cut(s)	84, 512
AgsI	TTSAA	1 cut(s)	112
AluBI	AGCT	4 cut(s)	64, 232, 392, 442
AluI	AGCT	4 cut(s)	64, 232, 392, 442
Alw26I	GTCTC	1 cut(s)	560
AlwI	GGATC	2 cut(s)	25, 554
AoxI	GGCC	2 cut(s)	6, 476
ApeKI	GCWGC	3 cut(s)	286, 463, 466
AspLEI	GCGC	4 cut(s)	77, 268, 487, 496
AspS9I	GGNCC	1 cut(s)	477
AsuHPI	GGTGA	1 cut(s)	539
BaeI	ACNNNNGTAYC	2 cut(s)	237, 270
BbvCI	CCTCAGC	1 cut(s)	360
BbvI	GCAGC	3 cut(s)	298, 475, 478
BccI	CCATC	1 cut(s)	78
BceAI	ACGGC	1 cut(s)	520
BciVI	GTATCC	3 cut(s)	320, 365, 389
BcoDI	GTCTC	1 cut(s)	560
BfoI	RGCGCY	1 cut(s)	78
BfuAI	ACCTGC	1 cut(s)	508
BfuI	GTATCC	3 cut(s)	320, 365, 389
BglI	GCCNNNNNGGC	1 cut(s)	475
BisI	GCNGC	4 cut(s)	6, 287, 464, 467
BlsI	GCNGC	4 cut(s)	7, 288, 465, 468
BmgT120I	GGNCC	1 cut(s)	477
BmrI	ACTGGG	1 cut(s)	30
BmuI	ACTGGG	1 cut(s)	30
Bpu10I	CCTNAGC	1 cut(s)	360
BsaBI	GATNNNNATC	1 cut(s)	423
BsaJI	CCNNGG	2 cut(s)	9, 78
Bsc4I	CCNNNNNNNGG	2 cut(s)	84, 512
Bse1I	ACTGG	2 cut(s)	36, 470
Bse8I	GATNNNNATC	1 cut(s)	423
BseDI	CCNNGG	2 cut(s)	9, 78
BseGI	GGATG	2 cut(s)	19, 89
BseJI	GATNNNNATC	1 cut(s)	423
BseLI	CCNNNNNNNGG	2 cut(s)	84, 512
BseMII	CTCAG	1 cut(s)	374
BseNI	ACTGG	2 cut(s)	36, 470
BseXI	GCAGC	3 cut(s)	298, 475, 478
BsgI	GTGCAG	1 cut(s)	486
Bsh1236I	CGCG	1 cut(s)	268
BshFI	GGCC	2 cut(s)	8, 478
BslI	CCNNNNNNNGG	2 cut(s)	84, 512
BsmAI	GTCTC	1 cut(s)	560
BsnI	GGCC	2 cut(s)	8, 478
Bsp143I	GATC	2 cut(s)	30, 559
BspACI	CCGC	3 cut(s)	5, 268, 533
BspANI	GGCC	2 cut(s)	8, 478
BspCNI	CTCAG	1 cut(s)	373
BspFNI	CGCG	1 cut(s)	268
BspMI	ACCTGC	1 cut(s)	508
BspPI	GGATC	2 cut(s)	25, 554
BsrI	ACTGG	2 cut(s)	36, 470
BssECI	CCNNGG	2 cut(s)	9, 78
BssMI	GATC	2 cut(s)	30, 559
BssT1I	CCWWGG	2 cut(s)	9, 78
Bst4CI	ACNGT	1 cut(s)	166
BstDEI	CTNAG	1 cut(s)	360
BstF5I	GGATG	2 cut(s)	19, 89
BstFNI	CGCG	1 cut(s)	268
BstH2I	RGCGCY	1 cut(s)	78
BstHHI	GCGC	4 cut(s)	77, 268, 487, 496
BstKTI	GATC	2 cut(s)	33, 562
BstMAI	GTCTC	1 cut(s)	560
BstMBI	GATC	2 cut(s)	30, 559
BstMWI	GCNNNNNNNGC	8 cut(s)	206, 292, 475, 484, 491, 493, 500, 532
BstNSI	RCATGY	1 cut(s)	494
BstUI	CGCG	1 cut(s)	268
BstV1I	GCAGC	3 cut(s)	298, 475, 478
BstX2I	RGATCY	1 cut(s)	30
BstYI	RGATCY	1 cut(s)	30
BsuI	GTATCC	3 cut(s)	320, 365, 389
BsuRI	GGCC	2 cut(s)	8, 478
BtsCI	GGATG	2 cut(s)	19, 89
BtsI	GCAGTG	1 cut(s)	480
BtsIMutI	CAGTG	1 cut(s)	480
BveI	ACCTGC	1 cut(s)	508
CfoI	GCGC	4 cut(s)	77, 268, 487, 496
Cfr13I	GGNCC	1 cut(s)	477
CspCI	CAANNNNNGTGG	2 cut(s)	519, 554
CviAII	CATG	2 cut(s)	323, 491
CviJI	RGCY	9 cut(s)	8, 64, 200, 232, 392, 442, 469, 478, 526
CviKI_1	RGCY	9 cut(s)	8, 64, 200, 232, 392, 442, 469, 478, 526
DdeI	CTNAG	1 cut(s)	360
DpnI	GATC	2 cut(s)	32, 561
DpnII	GATC	2 cut(s)	30, 559
EaeI	YGGCCR	1 cut(s)	6
Eco130I	CCWWGG	2 cut(s)	9, 78
Eco57I	CTGAAG	1 cut(s)	302
EcoT14I	CCWWGG	2 cut(s)	9, 78
ErhI	CCWWGG	2 cut(s)	9, 78
FaeI	CATG	2 cut(s)	326, 494
FatI	CATG	2 cut(s)	322, 490
Fnu4HI	GCNGC	4 cut(s)	6, 287, 464, 467
FokI	GGATG	2 cut(s)	26, 96
Fsp4HI	GCNGC	4 cut(s)	6, 287, 464, 467
GlaI	GCGC	4 cut(s)	76, 267, 486, 495
GluI	GCNGC	4 cut(s)	6, 287, 464, 467
HaeII	RGCGCY	1 cut(s)	78
HaeIII	GGCC	2 cut(s)	8, 478
HhaI	GCGC	4 cut(s)	77, 268, 487, 496
Hin1II	CATG	2 cut(s)	326, 494
Hin6I	GCGC	4 cut(s)	75, 266, 485, 494
HinP1I	GCGC	4 cut(s)	75, 266, 485, 494
HinfI	GANTC	1 cut(s)	544
HphI	GGTGA	1 cut(s)	539
Hpy188I	TCNGA	1 cut(s)	384
Hpy188III	TCNNGA	2 cut(s)	260, 563
HpyCH4III	ACNGT	1 cut(s)	166
HpyCH4V	TGCA	2 cut(s)	503, 576
HpyF10VI	GCNNNNNNNGC	8 cut(s)	206, 292, 475, 484, 491, 493, 500, 532
HpyF3I	CTNAG	1 cut(s)	360
Hsp92II	CATG	2 cut(s)	326, 494
HspAI	GCGC	4 cut(s)	75, 266, 485, 494
Kzo9I	GATC	2 cut(s)	30, 559
LmnI	GCTCC	1 cut(s)	389
Lsp1109I	GCAGC	3 cut(s)	298, 475, 478
MaeIII	GTNAC	4 cut(s)	46, 160, 166, 297
MalI	GATC	2 cut(s)	32, 561
MboI	GATC	2 cut(s)	30, 559
MboII	GAAGA	2 cut(s)	232, 248
MflI	RGATCY	1 cut(s)	30
MluCI	AATT	2 cut(s)	56, 451
MmeI	TCCRAC	2 cut(s)	155, 519
MnlI	CCTC	3 cut(s)	115, 256, 369
MseI	TTAA	2 cut(s)	59, 345
MslI	CAYNNNNRTG	2 cut(s)	143, 581
MvnI	CGCG	1 cut(s)	268
MwoI	GCNNNNNNNGC	8 cut(s)	206, 292, 475, 484, 491, 493, 500, 532
NdeII	GATC	2 cut(s)	30, 559
NlaIII	CATG	2 cut(s)	326, 494
NmuCI	GTSAC	1 cut(s)	46
NspI	RCATGY	1 cut(s)	494
PaqCI	CACCTGC	1 cut(s)	508
PfeI	GAWTC	1 cut(s)	544
PflMI	CCANNNNNTGG	1 cut(s)	84
PkrI	GCNGC	4 cut(s)	7, 288, 465, 468
PspPI	GGNCC	1 cut(s)	477
PsuI	RGATCY	1 cut(s)	30
RseI	CAYNNNNRTG	2 cut(s)	143, 581
SaqAI	TTAA	2 cut(s)	59, 345
SatI	GCNGC	4 cut(s)	6, 287, 464, 467
Sau3AI	GATC	2 cut(s)	30, 559
Sau96I	GGNCC	1 cut(s)	477
SetI	ASST	6 cut(s)	66, 234, 394, 444, 502, 517
SmiMI	CAYNNNNRTG	2 cut(s)	143, 581
Sse9I	AATT	2 cut(s)	56, 451
SsiI	CCGC	3 cut(s)	5, 268, 533
SspI	AATATT	1 cut(s)	311
StyI	CCWWGG	2 cut(s)	9, 78
TaaI	ACNGT	1 cut(s)	166
TaqI	TCGA	2 cut(s)	120, 202
TasI	AATT	2 cut(s)	56, 451
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	1 cut(s)	544
Tru1I	TTAA	2 cut(s)	59, 345
Tru9I	TTAA	2 cut(s)	59, 345
TscAI	CASTG	1 cut(s)	487
TseFI	GTSAC	1 cut(s)	46
TseI	GCWGC	3 cut(s)	286, 463, 466
Tsp45I	GTSAC	1 cut(s)	46
TspDTI	ATGAA	1 cut(s)	57
TspRI	CASTG	1 cut(s)	487
Van91I	CCANNNNNTGG	1 cut(s)	84
XceI	RCATGY	1 cut(s)	494

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.