FvH4_6g53282

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0001391
Physical Location & Seq
Reverse (-)
39098900 .. 39099732
833 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g53282.t1

Sequence Viewer

Length: 624 bp
ATGGCGGCCCAGGATGAGACAAAGCCAAAGATCCCCGGTCATGAGATAACTTGTCAATTGAAGTTGGATACTAATGCCAAGGGATGGCACAAGACCATCTCCAAAGTTTTGAAAACTATCGAGGGAGCATCTTACAGCATTGATATGCAAAATGGAAGCGTAACTGTTACTGGTATGATCGACCCGCAATCCCTCATGGCTCGATTAAGGAAATCTGGGAAGCATGCAGAGCTGATTAAGGTTGATTCAGGAGTCCTTCGTGAGGCGAGGATAAAAAAACAGAAGAAGCAGCAACAGAAGGAAGAAGAGGAAGAAGAATATTACAGGCAATTATGTTATGGGCGTGGTGGATATAACCCTTATGGCTATGCTAATGGTTATTATCCTCATCAGCAATATGGATATTATAACAGTGGAGCTGGATACCCTTATGGAACAACACCAGATTACTATCGCTCTCAGCATCAGCTCTACCCTAATTATTATCAGGAGCAGCCAGTTAGGGCAGCCGGAGCACCTTTGCCTGGTGTGACACATGCACCACGATTAGGGTTTCCACAGCCGCCACCGCCGATGGAGATTCACCCGTTTTACGATCCGGACACAAACTGCACAATAATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

208

Amino Acids

23.52

Weight (kDa)

8.56

Isoelectric Point (pI)

44.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 408
AccB7I CCANNNNNTGG 1 cut(s) 84
AccIII TCCGGA 1 cut(s) 598
AciI CCGC 4 cut(s) 5, 185, 563, 569
AclWI GGATC 2 cut(s) 25, 590
AfiI CCNNNNNNNGG 4 cut(s) 84, 262, 524, 548
AgsI TTSAA 2 cut(s) 61, 112
AjnI CCWGG 2 cut(s) 9, 523
AluBI AGCT 3 cut(s) 232, 419, 469
AluI AGCT 3 cut(s) 232, 419, 469
Alw21I GWGCWC 1 cut(s) 517
Alw26I GTCTC 1 cut(s) 11
AlwI GGATC 2 cut(s) 25, 590
Aor13HI TCCGGA 1 cut(s) 598
AoxI GGCC 1 cut(s) 6
ApeKI GCWGC 3 cut(s) 289, 493, 506
AspS9I GGNCC 1 cut(s) 7
AsuC2I CCSGG 1 cut(s) 36
AsuHPI GGTGA 1 cut(s) 575
Bbv12I GWGCWC 1 cut(s) 517
BbvI GCAGC 3 cut(s) 301, 505, 518
BccI CCATC 3 cut(s) 78, 104, 568
BciT130I CCWGG 2 cut(s) 11, 525
BciVI GTATCC 2 cut(s) 61, 416
BcnI CCSGG 1 cut(s) 36
BcoDI GTCTC 1 cut(s) 11
BfuI GTATCC 2 cut(s) 61, 416
BisI GCNGC 5 cut(s) 6, 290, 494, 507, 563
BlsI GCNGC 5 cut(s) 7, 291, 495, 508, 564
Bme1390I CCNGG 3 cut(s) 11, 36, 525
BmgT120I GGNCC 1 cut(s) 7
BmrFI CCNGG 3 cut(s) 11, 36, 525
BmsI GCATC 2 cut(s) 137, 472
BpuMI CCSGG 1 cut(s) 36
BsaBI GATNNNNATC 1 cut(s) 450
BsaJI CCNNGG 3 cut(s) 9, 34, 78
BsaWI WCCGGW 1 cut(s) 598
Bsc4I CCNNNNNNNGG 4 cut(s) 84, 262, 524, 548
Bse1I ACTGG 2 cut(s) 175, 497
Bse8I GATNNNNATC 1 cut(s) 450
BseAI TCCGGA 1 cut(s) 598
BseBI CCWGG 2 cut(s) 11, 525
BseDI CCNNGG 3 cut(s) 9, 34, 78
BseGI GGATG 2 cut(s) 19, 89
BseJI GATNNNNATC 1 cut(s) 450
BseLI CCNNNNNNNGG 4 cut(s) 84, 262, 524, 548
BseMII CTCAG 1 cut(s) 473
BseNI ACTGG 2 cut(s) 175, 497
BseXI GCAGC 3 cut(s) 301, 505, 518
BsgI GTGCAG 1 cut(s) 595
BshFI GGCC 1 cut(s) 8
BsiHKAI GWGCWC 1 cut(s) 517
BsiSI CCGG 3 cut(s) 36, 510, 599
BslI CCNNNNNNNGG 4 cut(s) 84, 262, 524, 548
BsmAI GTCTC 1 cut(s) 11
BsnI GGCC 1 cut(s) 8
Bsp1286I GDGCHC 1 cut(s) 517
Bsp13I TCCGGA 1 cut(s) 598
Bsp143I GATC 3 cut(s) 30, 177, 595
BspACI CCGC 4 cut(s) 5, 185, 563, 569
BspANI GGCC 1 cut(s) 8
BspCNI CTCAG 1 cut(s) 472
BspEI TCCGGA 1 cut(s) 598
BspHI TCATGA 1 cut(s) 40
BspPI GGATC 2 cut(s) 25, 590
BsrI ACTGG 2 cut(s) 175, 497
BssECI CCNNGG 3 cut(s) 9, 34, 78
BssMI GATC 3 cut(s) 30, 177, 595
BssT1I CCWWGG 1 cut(s) 78
Bst2UI CCWGG 2 cut(s) 11, 525
Bst4CI ACNGT 2 cut(s) 166, 413
Bst6I CTCTTC 1 cut(s) 300
BstC8I GCNNGC 1 cut(s) 225
BstDEI CTNAG 1 cut(s) 459
BstENI CCTNNNNNAGG 1 cut(s) 260
BstF5I GGATG 2 cut(s) 19, 89
BstKTI GATC 3 cut(s) 33, 180, 598
BstMAI GTCTC 1 cut(s) 11
BstMBI GATC 3 cut(s) 30, 177, 595
BstMWI GCNNNNNNNGC 3 cut(s) 229, 512, 568
BstNI CCWGG 2 cut(s) 11, 525
BstNSI RCATGY 2 cut(s) 227, 539
BstSCI CCNGG 3 cut(s) 9, 34, 523
BstV1I GCAGC 3 cut(s) 301, 505, 518
BstX2I RGATCY 1 cut(s) 30
BstYI RGATCY 1 cut(s) 30
BsuI GTATCC 2 cut(s) 61, 416
BsuRI GGCC 1 cut(s) 8
BtsCI GGATG 2 cut(s) 19, 89
BtsIMutI CAGTG 1 cut(s) 418
Cac8I GCNNGC 1 cut(s) 225
CciI TCATGA 1 cut(s) 40
Cfr13I GGNCC 1 cut(s) 7
CviAII CATG 4 cut(s) 41, 196, 224, 536
DdeI CTNAG 1 cut(s) 459
DpnI GATC 3 cut(s) 32, 179, 597
DpnII GATC 3 cut(s) 30, 177, 595
Eam1104I CTCTTC 1 cut(s) 300
EarI CTCTTC 1 cut(s) 300
Eco130I CCWWGG 1 cut(s) 78
EcoNI CCTNNNNNAGG 1 cut(s) 260
EcoRII CCWGG 2 cut(s) 9, 523
EcoT14I CCWWGG 1 cut(s) 78
ErhI CCWWGG 1 cut(s) 78
FaeI CATG 4 cut(s) 44, 199, 227, 539
FatI CATG 4 cut(s) 40, 195, 223, 535
FauI CCCGC 1 cut(s) 192
Fnu4HI GCNGC 5 cut(s) 6, 290, 494, 507, 563
FokI GGATG 2 cut(s) 26, 96
Fsp4HI GCNGC 5 cut(s) 6, 290, 494, 507, 563
GluI GCNGC 5 cut(s) 6, 290, 494, 507, 563
HaeIII GGCC 1 cut(s) 8
HapII CCGG 3 cut(s) 36, 510, 599
Hin1II CATG 4 cut(s) 44, 199, 227, 539
HinfI GANTC 3 cut(s) 245, 252, 580
HpaII CCGG 3 cut(s) 36, 510, 599
HphI GGTGA 1 cut(s) 575
Hpy188III TCNNGA 5 cut(s) 41, 249, 260, 488, 599
HpyAV CCTTC 2 cut(s) 266, 292
HpyCH4III ACNGT 2 cut(s) 166, 413
HpyCH4V TGCA 4 cut(s) 148, 227, 539, 612
HpyF10VI GCNNNNNNNGC 3 cut(s) 229, 512, 568
HpyF3I CTNAG 1 cut(s) 459
Hsp92II CATG 4 cut(s) 44, 199, 227, 539
Kpn2I TCCGGA 1 cut(s) 598
Kzo9I GATC 3 cut(s) 30, 177, 595
LmnI GCTCC 4 cut(s) 125, 416, 490, 512
Lsp1109I GCAGC 3 cut(s) 301, 505, 518
LweI GCATC 2 cut(s) 137, 472
MaeIII GTNAC 3 cut(s) 160, 166, 529
MalI GATC 3 cut(s) 32, 179, 597
MboI GATC 3 cut(s) 30, 177, 595
MboII GAAGA 5 cut(s) 295, 314, 317, 323, 326
MfeI CAATTG 1 cut(s) 56
MflI RGATCY 1 cut(s) 30
MhlI GDGCHC 1 cut(s) 517
MluCI AATT 3 cut(s) 56, 329, 478
MlyI GAGTC 1 cut(s) 261
MmeI TCCRAC 1 cut(s) 45
MnlI CCTC 6 cut(s) 115, 203, 256, 261, 301, 396
MroI TCCGGA 1 cut(s) 598
MseI TTAA 2 cut(s) 206, 237
MslI CAYNNNNRTG 2 cut(s) 143, 617
MspI CCGG 3 cut(s) 36, 510, 599
MspR9I CCNGG 3 cut(s) 11, 36, 525
MunI CAATTG 1 cut(s) 56
MvaI CCWGG 2 cut(s) 11, 525
MwoI GCNNNNNNNGC 3 cut(s) 229, 512, 568
NciI CCSGG 1 cut(s) 36
NdeII GATC 3 cut(s) 30, 177, 595
NlaIII CATG 4 cut(s) 44, 199, 227, 539
NmuCI GTSAC 1 cut(s) 529
NspI RCATGY 2 cut(s) 227, 539
PaeI GCATGC 1 cut(s) 227
PagI TCATGA 1 cut(s) 40
PfeI GAWTC 2 cut(s) 245, 580
PflMI CCANNNNNTGG 1 cut(s) 84
PkrI GCNGC 5 cut(s) 7, 291, 495, 508, 564
PleI GAGTC 1 cut(s) 260
PpsI GAGTC 1 cut(s) 260
PsiI TTATAA 1 cut(s) 408
Psp6I CCWGG 2 cut(s) 9, 523
PspGI CCWGG 2 cut(s) 9, 523
PspPI GGNCC 1 cut(s) 7
PsuI RGATCY 1 cut(s) 30
RseI CAYNNNNRTG 2 cut(s) 143, 617
SaqAI TTAA 2 cut(s) 206, 237
SatI GCNGC 5 cut(s) 6, 290, 494, 507, 563
Sau3AI GATC 3 cut(s) 30, 177, 595
Sau96I GGNCC 1 cut(s) 7
SchI GAGTC 1 cut(s) 261
ScrFI CCNGG 3 cut(s) 11, 36, 525
SduI GDGCHC 1 cut(s) 517
SetI ASST 5 cut(s) 234, 243, 421, 471, 520
SfaNI GCATC 2 cut(s) 137, 472
SmiMI CAYNNNNRTG 2 cut(s) 143, 617
SphI GCATGC 1 cut(s) 227
Sse9I AATT 3 cut(s) 56, 329, 478
SsiI CCGC 4 cut(s) 5, 185, 563, 569
SspI AATATT 1 cut(s) 320
StyD4I CCNGG 3 cut(s) 9, 34, 523
StyI CCWWGG 1 cut(s) 78
TaaI ACNGT 2 cut(s) 166, 413
TaqI TCGA 3 cut(s) 120, 180, 202
TasI AATT 3 cut(s) 56, 329, 478
TauI GCSGC 2 cut(s) 8, 565
TfiI GAWTC 2 cut(s) 245, 580
Tru1I TTAA 2 cut(s) 206, 237
Tru9I TTAA 2 cut(s) 206, 237
TscAI CASTG 1 cut(s) 418
TseFI GTSAC 1 cut(s) 529
TseI GCWGC 3 cut(s) 289, 493, 506
Tsp45I GTSAC 1 cut(s) 529
TspRI CASTG 1 cut(s) 418
Van91I CCANNNNNTGG 1 cut(s) 84
XagI CCTNNNNNAGG 1 cut(s) 260
XceI RCATGY 2 cut(s) 227, 539
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.