Rorug02G0584100

No description available

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Forward (+)
70705533 .. 70705829
297 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0584100.1

Sequence Viewer

Length: 249 bp
ATGGGTCTTGTGGGGGATGCACGTAAGGTGTTTGATAGAATGCCTGAGAGGAATTCAGTTTCGTGGGCTACTGTGATTTCTGGGTATGCAATAGGTGAGGAGAGTGAGGGAGAGAATGAGTTTATTTTGAGTAGTGTTGTGAGTGCCTTGGTTGTTCCTGAGTTTGTTGATACGGGGAAGCAAGACTTGAGGCGAGGTAAGAGGAGAACGACCTTGGAGAGCTCCGGCAAGGCCAAGGTGTTGATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

82

Amino Acids

8.97

Weight (kDa)

6.25

Isoelectric Point (pI)

53.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 52
AluBI AGCT 1 cut(s) 222
AluI AGCT 1 cut(s) 222
Alw21I GWGCWC 1 cut(s) 224
AoxI GGCC 1 cut(s) 231
ApoI RAATTY 1 cut(s) 52
AsuHPI GGTGA 1 cut(s) 107
BanII GRGCYC 1 cut(s) 224
Bbv12I GWGCWC 1 cut(s) 224
BmsI GCATC 1 cut(s) 7
BpuEI CTTGAG 1 cut(s) 208
BsaAI YACGTR 1 cut(s) 23
BsaJI CCNNGG 3 cut(s) 147, 213, 234
BseDI CCNNGG 3 cut(s) 147, 213, 234
BseGI GGATG 1 cut(s) 22
BseMII CTCAG 2 cut(s) 36, 150
BseRI GAGGAG 2 cut(s) 113, 217
BshFI GGCC 1 cut(s) 233
BsiHKAI GWGCWC 1 cut(s) 224
BsiSI CCGG 1 cut(s) 225
BsmI GAATGC 1 cut(s) 45
BsnI GGCC 1 cut(s) 233
Bsp1286I GDGCHC 1 cut(s) 224
Bsp143I GATC 1 cut(s) 243
BspANI GGCC 1 cut(s) 233
BspCNI CTCAG 2 cut(s) 37, 151
BssECI CCNNGG 3 cut(s) 147, 213, 234
BssMI GATC 1 cut(s) 243
BssT1I CCWWGG 3 cut(s) 147, 213, 234
Bst4CI ACNGT 1 cut(s) 73
BstBAI YACGTR 1 cut(s) 23
BstDEI CTNAG 2 cut(s) 45, 159
BstF5I GGATG 1 cut(s) 22
BstKTI GATC 1 cut(s) 246
BstMBI GATC 1 cut(s) 243
BsuRI GGCC 1 cut(s) 233
BtsCI GGATG 1 cut(s) 22
CviJI RGCY 3 cut(s) 68, 222, 233
CviKI_1 RGCY 3 cut(s) 68, 222, 233
DdeI CTNAG 2 cut(s) 45, 159
DpnI GATC 1 cut(s) 245
DpnII GATC 1 cut(s) 243
Ecl136II GAGCTC 1 cut(s) 222
Eco130I CCWWGG 3 cut(s) 147, 213, 234
Eco24I GRGCYC 1 cut(s) 224
Eco53kI GAGCTC 1 cut(s) 222
EcoICRI GAGCTC 1 cut(s) 222
EcoRI GAATTC 1 cut(s) 52
EcoT14I CCWWGG 3 cut(s) 147, 213, 234
EcoT38I GRGCYC 1 cut(s) 224
ErhI CCWWGG 3 cut(s) 147, 213, 234
FaiI YATR 1 cut(s) 87
FalI AAGNNNNNCTT 2 cut(s) 170, 202
FokI GGATG 1 cut(s) 29
FriOI GRGCYC 1 cut(s) 224
HaeIII GGCC 1 cut(s) 233
HapII CCGG 1 cut(s) 225
HpaII CCGG 1 cut(s) 225
HphI GGTGA 1 cut(s) 107
Hpy188I TCNGA 1 cut(s) 248
Hpy188III TCNNGA 1 cut(s) 158
HpyCH4III ACNGT 1 cut(s) 73
HpyCH4IV ACGT 1 cut(s) 22
HpyCH4V TGCA 2 cut(s) 20, 89
HpyF3I CTNAG 2 cut(s) 45, 159
HpySE526I ACGT 1 cut(s) 22
Kzo9I GATC 1 cut(s) 243
LmnI GCTCC 1 cut(s) 227
LpnPI CCDG 4 cut(s) 57, 66, 171, 238
LweI GCATC 1 cut(s) 7
MaeII ACGT 1 cut(s) 22
MalI GATC 1 cut(s) 245
MboI GATC 1 cut(s) 243
MhlI GDGCHC 1 cut(s) 224
MluCI AATT 1 cut(s) 52
MnlI CCTC 6 cut(s) 42, 91, 100, 183, 188, 195
MspI CCGG 1 cut(s) 225
Mva1269I GAATGC 1 cut(s) 45
NdeII GATC 1 cut(s) 243
PctI GAATGC 1 cut(s) 45
Ppu21I YACGTR 1 cut(s) 23
Psp124BI GAGCTC 1 cut(s) 224
SacI GAGCTC 1 cut(s) 224
Sau3AI GATC 1 cut(s) 243
SduI GDGCHC 1 cut(s) 224
SetI ASST 7 cut(s) 25, 30, 97, 199, 215, 224, 240
SfaNI GCATC 1 cut(s) 7
SmlI CTYRAG 1 cut(s) 187
SmoI CTYRAG 1 cut(s) 187
Sse9I AATT 1 cut(s) 52
SstI GAGCTC 1 cut(s) 224
StyI CCWWGG 3 cut(s) 147, 213, 234
TaaI ACNGT 1 cut(s) 73
TaiI ACGT 1 cut(s) 25
TasI AATT 1 cut(s) 52
XapI RAATTY 1 cut(s) 52
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.