Rh7AG022700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0001391
Physical Location & Seq
Reverse (-)
1514838 .. 1515137
300 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG022700.1

Sequence Viewer

Length: 300 bp
ATGGTCATGATCATTGCTAGCCTTGTGGCTAATTGTCTCTTTCTTTCAGTTGCTTTCGCTTTGGCGCTTGGAGTGCCGCCTTGGACAGAGATCGCTATGGTTGCTATCGGGGATGGTAGGTGTGTTTGCTTGGCTGATATGAGGTCGAGATCCGATTGGATGAATCTGTGGGGGTCTGTGGCGGATCGGCGCGTTTGGATCTTGGATACAGGTCGCACGGCTGGTGACTATGTTGAGAGTTTTACAGTAGGCATGAATGGAGGTTGGCAACAACGAGTTTGGGTCTCCTCGGATTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

99

Amino Acids

10.94

Weight (kDa)

4.72

Isoelectric Point (pI)

40.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 192
AciI CCGC 2 cut(s) 77, 182
AclWI GGATC 3 cut(s) 144, 192, 206
Alw26I GTCTC 2 cut(s) 41, 289
AlwI GGATC 3 cut(s) 144, 192, 206
AspLEI GCGC 2 cut(s) 67, 192
AsuHPI GGTGA 1 cut(s) 236
AsuNHI GCTAGC 1 cut(s) 17
BccI CCATC 1 cut(s) 107
BceAI ACGGC 1 cut(s) 234
BciVI GTATCC 1 cut(s) 199
BclI TGATCA 1 cut(s) 9
BcoDI GTCTC 2 cut(s) 41, 289
BfaI CTAG 1 cut(s) 18
BfoI RGCGCY 1 cut(s) 68
BfuI GTATCC 1 cut(s) 199
BisI GCNGC 1 cut(s) 77
BlsI GCNGC 1 cut(s) 78
BmtI GCTAGC 1 cut(s) 21
BsaI GGTCTC 1 cut(s) 289
BsaJI CCNNGG 2 cut(s) 80, 288
Bse3DI GCAATG 1 cut(s) 12
BseDI CCNNGG 2 cut(s) 80, 288
BseGI GGATG 2 cut(s) 118, 165
BseMI GCAATG 1 cut(s) 12
BseRI GAGGAG 1 cut(s) 277
Bsh1236I CGCG 1 cut(s) 192
BsmAI GTCTC 2 cut(s) 41, 289
Bso31I GGTCTC 1 cut(s) 289
Bsp143I GATC 5 cut(s) 9, 90, 149, 184, 198
BspACI CCGC 2 cut(s) 77, 182
BspFNI CGCG 1 cut(s) 192
BspHI TCATGA 1 cut(s) 6
BspOI GCTAGC 1 cut(s) 21
BspPI GGATC 3 cut(s) 144, 192, 206
BspTNI GGTCTC 1 cut(s) 289
BsrDI GCAATG 1 cut(s) 12
BssECI CCNNGG 2 cut(s) 80, 288
BssMI GATC 5 cut(s) 9, 90, 149, 184, 198
BssT1I CCWWGG 1 cut(s) 80
Bst4CI ACNGT 1 cut(s) 247
BstC8I GCNNGC 1 cut(s) 19
BstF5I GGATG 2 cut(s) 118, 165
BstFNI CGCG 1 cut(s) 192
BstH2I RGCGCY 1 cut(s) 68
BstHHI GCGC 2 cut(s) 67, 192
BstKTI GATC 5 cut(s) 12, 93, 152, 187, 201
BstMAI GTCTC 2 cut(s) 41, 289
BstMBI GATC 5 cut(s) 9, 90, 149, 184, 198
BstMWI GCNNNNNNNGC 2 cut(s) 73, 101
BstUI CGCG 1 cut(s) 192
BstX2I RGATCY 2 cut(s) 149, 198
BstYI RGATCY 2 cut(s) 149, 198
BsuI GTATCC 1 cut(s) 199
BtsCI GGATG 2 cut(s) 118, 165
Cac8I GCNNGC 1 cut(s) 19
CciI TCATGA 1 cut(s) 6
CfoI GCGC 2 cut(s) 67, 192
CviAII CATG 2 cut(s) 7, 253
CviJI RGCY 4 cut(s) 21, 29, 134, 221
CviKI_1 RGCY 4 cut(s) 21, 29, 134, 221
DpnI GATC 5 cut(s) 11, 92, 151, 186, 200
DpnII GATC 5 cut(s) 9, 90, 149, 184, 198
EciI GGCGGA 1 cut(s) 197
Eco130I CCWWGG 1 cut(s) 80
Eco31I GGTCTC 1 cut(s) 289
EcoT14I CCWWGG 1 cut(s) 80
ErhI CCWWGG 1 cut(s) 80
FaeI CATG 2 cut(s) 10, 256
FaiI YATR 5 cut(s) 8, 98, 140, 231, 254
FatI CATG 2 cut(s) 6, 252
FbaI TGATCA 1 cut(s) 9
Fnu4HI GCNGC 1 cut(s) 77
FokI GGATG 2 cut(s) 125, 172
Fsp4HI GCNGC 1 cut(s) 77
FspBI CTAG 1 cut(s) 18
GlaI GCGC 2 cut(s) 66, 191
GluI GCNGC 1 cut(s) 77
HaeII RGCGCY 1 cut(s) 68
HhaI GCGC 2 cut(s) 67, 192
Hin1II CATG 2 cut(s) 10, 256
Hin6I GCGC 2 cut(s) 65, 190
HinP1I GCGC 2 cut(s) 65, 190
HinfI GANTC 1 cut(s) 163
HphI GGTGA 1 cut(s) 236
Hpy188I TCNGA 2 cut(s) 154, 292
Hpy188III TCNNGA 2 cut(s) 7, 147
HpyCH4III ACNGT 1 cut(s) 247
HpyF10VI GCNNNNNNNGC 2 cut(s) 73, 101
Hsp92II CATG 2 cut(s) 10, 256
HspAI GCGC 2 cut(s) 65, 190
Ksp22I TGATCA 1 cut(s) 9
Kzo9I GATC 5 cut(s) 9, 90, 149, 184, 198
LpnPI CCDG 2 cut(s) 195, 207
MaeI CTAG 1 cut(s) 18
MaeIII GTNAC 1 cut(s) 224
MalI GATC 5 cut(s) 11, 92, 151, 186, 200
MboI GATC 5 cut(s) 9, 90, 149, 184, 198
MflI RGATCY 2 cut(s) 149, 198
MluCI AATT 1 cut(s) 31
MnlI CCTC 3 cut(s) 135, 254, 298
MvnI CGCG 1 cut(s) 192
MwoI GCNNNNNNNGC 2 cut(s) 73, 101
NdeII GATC 5 cut(s) 9, 90, 149, 184, 198
NheI GCTAGC 1 cut(s) 17
NlaIII CATG 2 cut(s) 10, 256
NmuCI GTSAC 1 cut(s) 224
PagI TCATGA 1 cut(s) 6
PfeI GAWTC 1 cut(s) 163
PkrI GCNGC 1 cut(s) 78
PsuI RGATCY 2 cut(s) 149, 198
SatI GCNGC 1 cut(s) 77
Sau3AI GATC 5 cut(s) 9, 90, 149, 184, 198
SetI ASST 4 cut(s) 122, 146, 214, 265
Sse9I AATT 1 cut(s) 31
SsiI CCGC 2 cut(s) 77, 182
SspMI CTAG 1 cut(s) 18
StyI CCWWGG 1 cut(s) 80
TaaI ACNGT 1 cut(s) 247
TaqI TCGA 1 cut(s) 146
TasI AATT 1 cut(s) 31
TauI GCSGC 1 cut(s) 79
TfiI GAWTC 1 cut(s) 163
TseFI GTSAC 1 cut(s) 224
Tsp45I GTSAC 1 cut(s) 224
TspDTI ATGAA 2 cut(s) 176, 269
XspI CTAG 1 cut(s) 18
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.